UBERON:0001441: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001441
|name=hindlimb skeleton
|namespace=
|def="The collection of all skeletal elements in an hindlimb region." [UBERON:cjm]
|xref=AAO:0000217;;EHDA...") |
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0002103 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string;;UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string;;UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:28, 27 June 2012
| Name: | hindlimb skeleton | ||
|---|---|---|---|
| Definition: | "The collection of all skeletal elements in an hindlimb region." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"bones of lower limb" EXACT [] "hind limb skeleton" EXACT [XAO:0003062] "hindlimb skeleton" EXACT [VHOG:0001255] "lower limb skeleton" EXACT [] "ossa membri inferioris" EXACT [FMA:24140, FMA:TA] "set of bones of lower limb" EXACT [] "skeleton of lower limb" EXACT [FMA:24140] | ||
| Comments: | TOOD - find a home for: FMA:24140 | ||
| Alt_id: | UBERON:FMA_24140-MA_0000670 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004381(skeleton of limb),UBERON:0007273(pelvic appendage skeleton) |
|---|---|
| part_of: | UBERON:0002103(hindlimb) |
Children
| part of: | UBERON:0000981 (femur),UBERON:0003464 (hindlimb bone),UBERON:0010885 (hindlimb cartilage element),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0015022 (hindlimb endochondral element),UBERON:0015052 (femur endochondral element) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001441 (hindlimb skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_2a22346320884e386d61364af66cbb55 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_2a22346320884e386d61364af66cbb55 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_56770795c72eae1f32f3bd9827d95810 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_56770795c72eae1f32f3bd9827d95810 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_56770795c72eae1f32f3bd9827d95810 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_56770795c72eae1f32f3bd9827d95810 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_56770795c72eae1f32f3bd9827d95810 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_56770795c72eae1f32f3bd9827d95810 | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_47a68d1f32a9159b124729fa4b70e416 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_47a68d1f32a9159b124729fa4b70e416 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6c8d777d1c9363b6edd1b600fe2e385e | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6c8d777d1c9363b6edd1b600fe2e385e | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_5d7ebb189cb574653963a4796def5dee | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_5d7ebb189cb574653963a4796def5dee | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_5d7ebb189cb574653963a4796def5dee | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_5d7ebb189cb574653963a4796def5dee | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_5d7ebb189cb574653963a4796def5dee | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_5d7ebb189cb574653963a4796def5dee | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_5d7ebb189cb574653963a4796def5dee | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_5d7ebb189cb574653963a4796def5dee | p@chr16:24096441..24096449, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_40db5edd8c28bbead90d6c9ce31a2b80 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_40db5edd8c28bbead90d6c9ce31a2b80 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_0290f1f3535f6f3a5dcfd00baf02b2f9 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_0290f1f3535f6f3a5dcfd00baf02b2f9 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_f9f226a14251eadebb08df0db53a9009 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_f9f226a14251eadebb08df0db53a9009 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_5adc266d23b4e87e46e4e5a58f60acc1 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_5adc266d23b4e87e46e4e5a58f60acc1 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_a9415a81a177d1bc802071b5c8fb3447 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_a9415a81a177d1bc802071b5c8fb3447 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_72ae81de20e05ddc4deb8559275f60ed | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_72ae81de20e05ddc4deb8559275f60ed | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_910853a2dc4d8ca6b71a44baefa81be9 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_910853a2dc4d8ca6b71a44baefa81be9 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_5aa1dff8314bb40e495a893d988fbd8f | p2@Oscar |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_5aa1dff8314bb40e495a893d988fbd8f | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_5aa1dff8314bb40e495a893d988fbd8f | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_5aa1dff8314bb40e495a893d988fbd8f | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_d67465a61a88a2ada28ba667c567adc1 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_d67465a61a88a2ada28ba667c567adc1 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_d67465a61a88a2ada28ba667c567adc1 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_d67465a61a88a2ada28ba667c567adc1 | p4@Lipc |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_e9d2cf08ef08b11a3833f3b3493d81f5 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_e9d2cf08ef08b11a3833f3b3493d81f5 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_57ec37625730cf4fc94e246aee06f594 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_57ec37625730cf4fc94e246aee06f594 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_57ec37625730cf4fc94e246aee06f594 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_57ec37625730cf4fc94e246aee06f594 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_8f7adaf7b4f548ad3fa95a7ae6a4500e | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_8f7adaf7b4f548ad3fa95a7ae6a4500e | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_ba3cc471641f29eb9d82e4ac9c618a00 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_ba3cc471641f29eb9d82e4ac9c618a00 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_ba3cc471641f29eb9d82e4ac9c618a00 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_ba3cc471641f29eb9d82e4ac9c618a00 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_0781977407e6ff0b26a4af86e0380879 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_0781977407e6ff0b26a4af86e0380879 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_1e26f87a2157f2749da867f12bb54f1e | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_1e26f87a2157f2749da867f12bb54f1e | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_16e25b8c925263edf1c37d56868adfb4 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_16e25b8c925263edf1c37d56868adfb4 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_5514e6fd44d59a6aa614779f67b8fed0 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_5514e6fd44d59a6aa614779f67b8fed0 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_0e95b5d8513d0ab1d04b03b7d2e41e00 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_0e95b5d8513d0ab1d04b03b7d2e41e00 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_0e95b5d8513d0ab1d04b03b7d2e41e00 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_0e95b5d8513d0ab1d04b03b7d2e41e00 | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_e874305aac5f0ace2e0eb8b11d9b4995 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_e874305aac5f0ace2e0eb8b11d9b4995 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_e874305aac5f0ace2e0eb8b11d9b4995 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_e874305aac5f0ace2e0eb8b11d9b4995 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_50aa259db35f19f74c62ed209c3508d4 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_50aa259db35f19f74c62ed209c3508d4 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_61d2f1f8b0f396d868e56de447642954 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_61d2f1f8b0f396d868e56de447642954 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_06ebca357591b31f99dcb17332d03fe9 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_06ebca357591b31f99dcb17332d03fe9 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_d5f2d4858b2146787b6436e9673ade20 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_d5f2d4858b2146787b6436e9673ade20 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_5f94bb8a4e983eb53f9f11886a6db318 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_5f94bb8a4e983eb53f9f11886a6db318 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_99fe624fa4d704f1b6dabe1bc189d78f | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_99fe624fa4d704f1b6dabe1bc189d78f | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_f793a6ce470bd3f734d771245c345878 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_f793a6ce470bd3f734d771245c345878 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_f793a6ce470bd3f734d771245c345878 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_f793a6ce470bd3f734d771245c345878 | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_22c1f26027e4eb01ee4d49a765b59c77 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_22c1f26027e4eb01ee4d49a765b59c77 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_e2e0c475d188f56bb4d06ac8dc933549 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_e2e0c475d188f56bb4d06ac8dc933549 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_467e029881145a40e56e5a315296c18a | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_467e029881145a40e56e5a315296c18a | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_467e029881145a40e56e5a315296c18a | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_467e029881145a40e56e5a315296c18a | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_51cbee31edf7ebeeda70136a7cdafbb0 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_51cbee31edf7ebeeda70136a7cdafbb0 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_51cbee31edf7ebeeda70136a7cdafbb0 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_51cbee31edf7ebeeda70136a7cdafbb0 | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_db9d18fd3f55d296af157af00091deb0 | p2@Siglec15 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_db9d18fd3f55d296af157af00091deb0 | p@chr2:180890942..180890956, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
