UBERON:0002299: Difference between revisions
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|part_of= | |part_of=UBERON:0002048;;UBERON:0002169;;UBERON:0006524 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
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Revision as of 13:31, 27 June 2012
| Name: | alveolus of lung | ||
|---|---|---|---|
| Definition: | "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus] | ||
| Xrefs: |
| ||
| Synonyms: |
"alveoli" RELATED PLURAL [BTO:0000060] "alveolus" BROAD [] "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus] "alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus] "lung alveolus" EXACT [] "pulmonary alveolus" EXACT [FMA:7318] | ||
| Alt_id: | UBERON:FMA_82493-MA_0000420 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003215(alveolus),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0002048(lung),UBERON:0002169(alveolar sac),UBERON:0006524(alveolar system) |
Children
| part of: | UBERON:0004821 (pulmonary alveolus epithelium),UBERON:0004894 (alveolar wall),CL:0010003 (epithelial cell of alveolus of lung) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
- 11671-122G6 (Alveolar Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002299 (alveolus of lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_0af26381b37140096143f25893fab3ad | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_0af26381b37140096143f25893fab3ad | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_0af26381b37140096143f25893fab3ad | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_0af26381b37140096143f25893fab3ad | p1@SSX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_0af26381b37140096143f25893fab3ad | p1@SSX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_0af26381b37140096143f25893fab3ad | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_0af26381b37140096143f25893fab3ad | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_0af26381b37140096143f25893fab3ad | p@chr17:13574618..13574636, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_0af26381b37140096143f25893fab3ad | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_0af26381b37140096143f25893fab3ad | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_0af26381b37140096143f25893fab3ad | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_0af26381b37140096143f25893fab3ad | p@chr17:13574618..13574636, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_0af26381b37140096143f25893fab3ad | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_0af26381b37140096143f25893fab3ad | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_0af26381b37140096143f25893fab3ad | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_0af26381b37140096143f25893fab3ad | p14@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_0af26381b37140096143f25893fab3ad | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_0af26381b37140096143f25893fab3ad | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_0af26381b37140096143f25893fab3ad | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_0af26381b37140096143f25893fab3ad | p14@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_0af26381b37140096143f25893fab3ad | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_0af26381b37140096143f25893fab3ad | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_0af26381b37140096143f25893fab3ad | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_0af26381b37140096143f25893fab3ad | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_0af26381b37140096143f25893fab3ad | p13@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_0af26381b37140096143f25893fab3ad | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_0af26381b37140096143f25893fab3ad | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_0af26381b37140096143f25893fab3ad | p13@DNMBP |
| 1.53e-44 | FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_4a9219081127c8303bd345abce4846f9 | p@chr2:191696381..191696384, - |
| 1.53e-44 | FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_4a9219081127c8303bd345abce4846f9 | p@chr2:191696381..191696384, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_96dedb9e158caaa4a1147dd6369ae0ea | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_96dedb9e158caaa4a1147dd6369ae0ea | p30@PDP1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_96dedb9e158caaa4a1147dd6369ae0ea | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_96dedb9e158caaa4a1147dd6369ae0ea | p30@PDP1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_96dedb9e158caaa4a1147dd6369ae0ea | p7@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_96dedb9e158caaa4a1147dd6369ae0ea | p7@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_96dedb9e158caaa4a1147dd6369ae0ea | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_96dedb9e158caaa4a1147dd6369ae0ea | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_96dedb9e158caaa4a1147dd6369ae0ea | p11@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_96dedb9e158caaa4a1147dd6369ae0ea | p11@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_96dedb9e158caaa4a1147dd6369ae0ea | p@chr4:169956294..169956301, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_09f63bce7f87641b220e2740a4de6baf | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_09f63bce7f87641b220e2740a4de6baf | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_09f63bce7f87641b220e2740a4de6baf | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_09f63bce7f87641b220e2740a4de6baf | p12@AADAT |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_09f63bce7f87641b220e2740a4de6baf | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_09f63bce7f87641b220e2740a4de6baf | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_09f63bce7f87641b220e2740a4de6baf | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_09f63bce7f87641b220e2740a4de6baf | p36@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_09f63bce7f87641b220e2740a4de6baf | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_09f63bce7f87641b220e2740a4de6baf | p12@AADAT |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_09f63bce7f87641b220e2740a4de6baf | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_09f63bce7f87641b220e2740a4de6baf | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_09f63bce7f87641b220e2740a4de6baf | p36@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_09f63bce7f87641b220e2740a4de6baf | p34@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_09f63bce7f87641b220e2740a4de6baf | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_09f63bce7f87641b220e2740a4de6baf | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_09f63bce7f87641b220e2740a4de6baf | p34@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_09f63bce7f87641b220e2740a4de6baf | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_09f63bce7f87641b220e2740a4de6baf | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_09f63bce7f87641b220e2740a4de6baf | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_09f63bce7f87641b220e2740a4de6baf | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_09f63bce7f87641b220e2740a4de6baf | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_09f63bce7f87641b220e2740a4de6baf | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_09f63bce7f87641b220e2740a4de6baf | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_09f63bce7f87641b220e2740a4de6baf | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_09f63bce7f87641b220e2740a4de6baf | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_09f63bce7f87641b220e2740a4de6baf | p5@C20orf141 |
| 1.71e-30 | FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_bbff610dcf63c338a19461424f79a43c | p1@BC018659 |
| 1.71e-30 | FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_bbff610dcf63c338a19461424f79a43c | p1@BC018659 |
| 1.59e-27 | FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_0a0145ae16858e372f6421984654cff1 | p@chr14:29047235..29047244, + |
| 1.59e-27 | FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_0a0145ae16858e372f6421984654cff1 | p@chr14:29047235..29047244, + |
| 3.56e-27 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_8049188f4ce3ec2c516b45d3f3f48219 | p@chr17:171082..171101, + |
| 3.56e-27 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_8049188f4ce3ec2c516b45d3f3f48219 | p@chr17:171082..171101, + |
| 7.93e-25 | FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_c2dfcc9cbc9bc2b6d56a06305308ef8c | p@chr7:27163592..27163605, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_c2dfcc9cbc9bc2b6d56a06305308ef8c | p@chr7:27163592..27163605, - |
