Personal tools

UBERON:0002321: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 5: Line 5:
|def=
|def=
|xref=EMAPA:28278;;FMA:84141;;MA:0002602
|xref=EMAPA:28278;;FMA:84141;;MA:0002602
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120;;UBERON:0006554
|synonym=
|synonym=
|comment=editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus?
|comment=editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus?
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
Line 20: Line 19:
|located_in=
|located_in=
|part_of=UBERON:0001229;;UBERON:0002303;;UBERON:0002319
|part_of=UBERON:0001229;;UBERON:0002303;;UBERON:0002319
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Latest revision as of 13:31, 27 June 2012

Name:extraglomerular mesangium
Xrefs:
links:

EMAPA:28278
FMA:84141

MA:0002602
Comments:editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus?
Alt_id: UBERON:FMA_84141-MA_0002602

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003567(abdomen connective tissue),UBERON:0003891(stroma),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
part_of:UBERON:0001229(renal corpuscle),UBERON:0002303(juxtaglomerular apparatus),UBERON:0002319(mesangium)



Children

part of:CL:0002173 (extraglomerular mesangial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002321 (extraglomerular mesangium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data