UBERON:0006514: Difference between revisions
From FANTOM5_SSTAR
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0002420 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002435 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002435 | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 13:41, 27 June 2012
Name: | pallidum | |
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Definition: | "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [1] | |
Xrefs: |
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Synonyms: |
"neuraxis pallidum" EXACT [FMA:83684] "pallidum of neuraxis" EXACT [FMA:83684] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0003528(brain grey matter) |
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part_of: | UBERON:0002420(basal ganglion) |
Children
part of: | UBERON:0001875 (globus pallidus) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10364-105F4 (globus pallidus, newborn, donor10223)
- 10367-105F7 (globus pallidus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006514 (pallidum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data