Coexpression cluster:C85: Difference between revisions

Revision as of 20:54, 8 August 2012

Full id: C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma

Phase1 CAGE Peaks

Hg19::chr10:117803540..117803547,+	p@chr10:117803540..117803547 +
Hg19::chr11:123567559..123567573,+	p@chr11:123567559..123567573 +
Hg19::chr11:18477369..18477415,+	p1@LDHAL6A
Hg19::chr11:39796850..39796855,+	p@chr11:39796850..39796855 +
Hg19::chr11:8680006..8680010,-	p@chr11:8680006..8680010 -
Hg19::chr11:8680046..8680060,-	p@chr11:8680046..8680060 -
Hg19::chr11:8680082..8680102,-	p@chr11:8680082..8680102 -
Hg19::chr12:120805876..120805897,-	p6@MSI1
Hg19::chr12:133306843..133306848,-	p27@ANKLE2
Hg19::chr12:14570875..14570907,+	p@chr12:14570875..14570907 +
Hg19::chr12:14570928..14570945,+	p@chr12:14570928..14570945 +
Hg19::chr12:66786385..66786419,-	p13@GRIP1
Hg19::chr12:7527226..7527237,-	p@chr12:7527226..7527237 -
Hg19::chr12:86777849..86777855,+	p@chr12:86777849..86777855 +
Hg19::chr13:35778543..35778559,-	p@chr13:35778543..35778559 -
Hg19::chr13:35778741..35778756,+	p@chr13:35778741..35778756 +
Hg19::chr13:35782869..35782904,+	p@chr13:35782869..35782904 +
Hg19::chr13:35804956..35804976,-	p@chr13:35804956..35804976 -
Hg19::chr13:36045103..36045110,+	p@chr13:36045103..36045110 +
Hg19::chr13:37494904..37494911,-	p24@SMAD9
Hg19::chr13:37494987..37494992,-	p23@SMAD9
Hg19::chr13:43873058..43873095,-	p@chr13:43873058..43873095 -
Hg19::chr14:23466494..23466503,-	p@chr14:23466494..23466503 -
Hg19::chr14:51057166..51057175,+	p@chr14:51057166..51057175 +
Hg19::chr14:77387137..77387151,+	p@chr14:77387137..77387151 +
Hg19::chr14:79880545..79880553,-	p@chr14:79880545..79880553 -
Hg19::chr15:78914288..78914292,-	p@chr15:78914288..78914292 -
Hg19::chr16:29825306..29825330,+	p@chr16:29825306..29825330 +
Hg19::chr16:49733031..49733072,-	p@chr16:49733031..49733072 -
Hg19::chr17:11389592..11389599,-	p@chr17:11389592..11389599 -
Hg19::chr17:26891009..26891011,-	p14@PIGS
Hg19::chr17:28903475..28903494,+	p1@LRRC37BP1
Hg19::chr17:48911942..48911984,+	p10@WFIKKN2
Hg19::chr17:50375199..50375224,+	p@chr17:50375199..50375224 +
Hg19::chr17:66694330..66694333,-	p@chr17:66694330..66694333 -
Hg19::chr17:7095595..7095641,-	p5@DLG4
Hg19::chr17:7095642..7095662,-	p17@DLG4
Hg19::chr17:7095665..7095701,-	p4@DLG4
Hg19::chr17:7095704..7095716,-	p25@DLG4
Hg19::chr17:71161140..71161174,+	p1@SSTR2
Hg19::chr17:72104508..72104526,-	p@chr17:72104508..72104526 -
Hg19::chr17:76713100..76713122,-	p11@CYTH1
Hg19::chr17:77681118..77681143,+	p1@HP09025
Hg19::chr18:18943559..18943587,+	p@chr18:18943559..18943587 +
Hg19::chr18:22253333..22253348,+	p@chr18:22253333..22253348 +
Hg19::chr18:435383..435391,-	p@chr18:435383..435391 -
Hg19::chr19:34175642..34175654,+	p3@CHST8
Hg19::chr19:41197501..41197540,+	p1@CU680509
Hg19::chr19:4683283..4683314,-	p@chr19:4683283..4683314 -
Hg19::chr1:11514263..11514273,-	p@chr1:11514263..11514273 -
Hg19::chr1:116383701..116383706,-	p9@NHLH2
Hg19::chr1:116383716..116383723,-	p5@NHLH2
Hg19::chr1:116383738..116383752,-	p1@NHLH2
Hg19::chr1:116908311..116908336,+	p@chr1:116908311..116908336 +
Hg19::chr1:116908533..116908577,+	p@chr1:116908533..116908577 +
Hg19::chr1:188791330..188791337,-	p@chr1:188791330..188791337 -
Hg19::chr1:210789950..210789954,+	p@chr1:210789950..210789954 +
Hg19::chr1:224847944..224847978,-	p@chr1:224847944..224847978 -
Hg19::chr1:243557736..243557747,+	p@chr1:243557736..243557747 +
Hg19::chr1:244419820..244419822,-	p@chr1:244419820..244419822 -
Hg19::chr1:33351572..33351602,+	p4@HPCA
Hg19::chr20:42667673..42667680,+	p15@TOX2
Hg19::chr20:42863502..42863507,+	p@chr20:42863502..42863507 +
Hg19::chr20:45523140..45523148,+	p8@EYA2
Hg19::chr20:49838362..49838368,+	p@chr20:49838362..49838368 +
Hg19::chr20:51453401..51453404,-	p@chr20:51453401..51453404 -
Hg19::chr20:51511829..51511853,-	p@chr20:51511829..51511853 -
Hg19::chr20:51511930..51511970,-	p@chr20:51511930..51511970 -
Hg19::chr21:39288033..39288044,+	p@chr21:39288033..39288044 +
Hg19::chr2:137523086..137523120,+	p1@THSD7B
Hg19::chr2:137523123..137523134,+	p3@THSD7B
Hg19::chr2:137523143..137523154,+	p2@THSD7B
Hg19::chr2:137653110..137653113,+	p@chr2:137653110..137653113 +
Hg19::chr2:15040249..15040252,+	p@chr2:15040249..15040252 +
Hg19::chr2:15047375..15047384,+	p@chr2:15047375..15047384 +
Hg19::chr2:15047385..15047399,+	p@chr2:15047385..15047399 +
Hg19::chr2:15047410..15047415,+	p@chr2:15047410..15047415 +
Hg19::chr2:15049487..15049491,-	p@chr2:15049487..15049491 -
Hg19::chr2:15049978..15049987,-	p@chr2:15049978..15049987 -
Hg19::chr2:15050016..15050024,-	p@chr2:15050016..15050024 -
Hg19::chr2:15052822..15052826,-	p@chr2:15052822..15052826 -
Hg19::chr2:15130380..15130381,-	p@chr2:15130380..15130381 -
Hg19::chr2:15200068..15200072,-	p@chr2:15200068..15200072 -
Hg19::chr2:156162072..156162084,+	p@chr2:156162072..156162084 +
Hg19::chr2:156162148..156162154,+	p@chr2:156162148..156162154 +
Hg19::chr2:156287980..156287983,+	p@chr2:156287980..156287983 +
Hg19::chr2:15691754..15691803,-	p@chr2:15691754..15691803 -
Hg19::chr2:15694908..15694923,-	p@chr2:15694908..15694923 -
Hg19::chr2:15694924..15694928,-	p@chr2:15694924..15694928 -
Hg19::chr2:15694929..15694950,-	p@chr2:15694929..15694950 -
Hg19::chr2:15694960..15694970,-	p@chr2:15694960..15694970 -
Hg19::chr2:15703776..15703783,+	p@chr2:15703776..15703783 +
Hg19::chr2:15731289..15731298,+	p6@DDX1
Hg19::chr2:15731692..15731705,-	p@chr2:15731692..15731705 -
Hg19::chr2:15731732..15731744,-	p@chr2:15731732..15731744 -
Hg19::chr2:15731782..15731899,-	p@chr2:15731782..15731899 -
Hg19::chr2:15731901..15731913,-	p@chr2:15731901..15731913 -
Hg19::chr2:15731978..15732050,+	p1@DDX1
Hg19::chr2:15732427..15732439,-	p@chr2:15732427..15732439 -
Hg19::chr2:15732443..15732474,-	p@chr2:15732443..15732474 -
Hg19::chr2:15740801..15740812,+	p@chr2:15740801..15740812 +
Hg19::chr2:15748757..15748764,+	p@chr2:15748757..15748764 +
Hg19::chr2:15748808..15748813,+	p@chr2:15748808..15748813 +
Hg19::chr2:15750164..15750182,+	p@chr2:15750164..15750182 +
Hg19::chr2:15750783..15750790,+	p@chr2:15750783..15750790 +
Hg19::chr2:15750933..15750939,+	p@chr2:15750933..15750939 +
Hg19::chr2:15750941..15750967,+	p@chr2:15750941..15750967 +
Hg19::chr2:15771117..15771141,+	p@chr2:15771117..15771141 +
Hg19::chr2:15775085..15775089,+	p@chr2:15775085..15775089 +
Hg19::chr2:15784374..15784378,+	p@chr2:15784374..15784378 +
Hg19::chr2:16082812..16082820,+	p@chr2:16082812..16082820 +
Hg19::chr2:177021851..177021861,+	p@chr2:177021851..177021861 +
Hg19::chr2:182543783..182543813,-	p6@NEUROD1
Hg19::chr2:189159028..189159031,+	p36@GULP1
Hg19::chr2:74741642..74741658,+	p2@TLX2
Hg19::chr2:74968903..74968927,-	p@chr2:74968903..74968927 -
Hg19::chr2:84790187..84790195,+	p@chr2:84790187..84790195 +
Hg19::chr3:13084508..13084517,-	p@chr3:13084508..13084517 -
Hg19::chr3:29684296..29684311,-	p1@RBMS3-AS2
Hg19::chr4:119234424..119234465,-	p7@PRSS12
Hg19::chr4:121579996..121580040,+	p@chr4:121579996..121580040 +
Hg19::chr4:174440289..174440300,-	p@chr4:174440289..174440300 -
Hg19::chr4:174440376..174440389,-	p@chr4:174440376..174440389 -
Hg19::chr4:174446653..174446657,-	p@chr4:174446653..174446657 -
Hg19::chr4:174446687..174446692,-	p@chr4:174446687..174446692 -
Hg19::chr4:174954376..174954399,-	p@chr4:174954376..174954399 -
Hg19::chr4:174955165..174955170,-	p@chr4:174955165..174955170 -
Hg19::chr4:174968748..174968753,+	p@chr4:174968748..174968753 +
Hg19::chr4:175041125..175041137,-	p@chr4:175041125..175041137 -
Hg19::chr4:175041762..175041777,-	p2@ENST00000503140
Hg19::chr4:175041780..175041792,-	p3@ENST00000503140
Hg19::chr4:175131715..175131722,+	p@chr4:175131715..175131722 +
Hg19::chr4:175131785..175131801,+	p@chr4:175131785..175131801 +
Hg19::chr4:175195325..175195356,-	p@chr4:175195325..175195356 -
Hg19::chr4:175204466..175204499,+	p5@CEP44
Hg19::chr4:175204510..175204534,+	p4@CEP44
Hg19::chr4:175204540..175204549,+	p11@CEP44
Hg19::chr4:175204865..175204915,+	p2@CEP44
Hg19::chr4:175257438..175257442,+	p@chr4:175257438..175257442 +
Hg19::chr4:175259387..175259388,+	p1@AK125844
Hg19::chr4:175259702..175259704,+	p2@AK125844
Hg19::chr4:3747792..3747806,+	p@chr4:3747792..3747806 +
Hg19::chr4:41750047..41750056,-	p7@PHOX2B
Hg19::chr4:41750057..41750078,-	p3@PHOX2B
Hg19::chr4:41750310..41750322,+	p2@ENST00000508038
Hg19::chr4:41750356..41750371,+	p1@ENST00000508038
Hg19::chr4:41813448..41813455,-	p@chr4:41813448..41813455 -
Hg19::chr4:41875745..41875750,-	p@chr4:41875745..41875750 -
Hg19::chr4:80976472..80976514,-	p33@ANTXR2
Hg19::chr4:80976547..80976566,-	p30@ANTXR2
Hg19::chr4:85046693..85046696,-	p@chr4:85046693..85046696 -
Hg19::chr4:85047369..85047375,-	p@chr4:85047369..85047375 -
Hg19::chr5:112136808..112136818,+	p@chr5:112136808..112136818 +
Hg19::chr5:120720126..120720131,-	p@chr5:120720126..120720131 -
Hg19::chr5:134808885..134808888,-	p@chr5:134808885..134808888 -
Hg19::chr5:178228030..178228032,-	p@chr5:178228030..178228032 -
Hg19::chr5:178259802..178259818,-	p@chr5:178259802..178259818 -
Hg19::chr5:178259821..178259898,-	p@chr5:178259821..178259898 -
Hg19::chr5:38211560..38211569,-	p@chr5:38211560..38211569 -
Hg19::chr5:68176275..68176277,-	p@chr5:68176275..68176277 -
Hg19::chr6:117086007..117086014,-	p@chr6:117086007..117086014 -
Hg19::chr6:123225630..123225667,+	p@chr6:123225630..123225667 +
Hg19::chr6:16905685..16905689,+	p@chr6:16905685..16905689 +
Hg19::chr6:16905879..16905882,+	p@chr6:16905879..16905882 +
Hg19::chr6:23177224..23177279,-	p1@ENST00000420572
Hg19::chr6:23177297..23177304,-	p2@ENST00000420572
Hg19::chr6:23523310..23523315,+	p@chr6:23523310..23523315 +
Hg19::chr6:3195997..3196015,-	p1@LOC100507194
Hg19::chr6:33811774..33811788,+	p@chr6:33811774..33811788 +
Hg19::chr6:65970038..65970044,-	p@chr6:65970038..65970044 -
Hg19::chr6:79577709..79577716,+	p@chr6:79577709..79577716 +
Hg19::chr6:79577721..79577739,+	p@chr6:79577721..79577739 +
Hg19::chr6:79577742..79577749,+	p@chr6:79577742..79577749 +
Hg19::chr7:1022943..1022954,+	p3@CYP2W1
Hg19::chr7:1022973..1022988,+	p2@CYP2W1
Hg19::chr7:131641304..131641315,+	p@chr7:131641304..131641315 +
Hg19::chr7:18834859..18834879,-	p@chr7:18834859..18834879 -
Hg19::chr7:18860636..18860637,-	p@chr7:18860636..18860637 -
Hg19::chr7:18860660..18860668,-	p@chr7:18860660..18860668 -
Hg19::chr7:18860675..18860696,-	p@chr7:18860675..18860696 -
Hg19::chr7:18860722..18860728,-	p@chr7:18860722..18860728 -
Hg19::chr7:18860743..18860764,-	p@chr7:18860743..18860764 -
Hg19::chr7:18861111..18861118,-	p@chr7:18861111..18861118 -
Hg19::chr7:18861136..18861151,-	p@chr7:18861136..18861151 -
Hg19::chr7:19146256..19146270,-	p@chr7:19146256..19146270 -
Hg19::chr7:19146281..19146282,-	p@chr7:19146281..19146282 -
Hg19::chr7:19146371..19146419,-	p@chr7:19146371..19146419 -
Hg19::chr7:19184929..19184938,-	p4@FERD3L
Hg19::chr7:19185044..19185056,+	p@chr7:19185044..19185056 +
Hg19::chr7:19185475..19185487,-	p1@FERD3L
Hg19::chr7:19185559..19185569,-	p@chr7:19185559..19185569 -
Hg19::chr7:19185585..19185590,-	p@chr7:19185585..19185590 -
Hg19::chr7:19185639..19185643,+	p@chr7:19185639..19185643 +
Hg19::chr7:19186529..19186536,+	p@chr7:19186529..19186536 +
Hg19::chr7:31330919..31330935,+	p@chr7:31330919..31330935 +
Hg19::chr7:31342195..31342197,+	p@chr7:31342195..31342197 +
Hg19::chr7:31342221..31342227,+	p@chr7:31342221..31342227 +
Hg19::chr7:31342233..31342240,+	p@chr7:31342233..31342240 +
Hg19::chr7:31726791..31726798,+	p2@PPP1R17
Hg19::chr7:43000472..43000514,-	p@chr7:43000472..43000514 -
Hg19::chr7:54612889..54612921,+	p@chr7:54612889..54612921 +
Hg19::chr7:79220418..79220423,+	p@chr7:79220418..79220423 +
Hg19::chr7:79220442..79220449,+	p@chr7:79220442..79220449 +
Hg19::chr7:79220491..79220512,+	p@chr7:79220491..79220512 +
Hg19::chr7:79224173..79224178,+	p@chr7:79224173..79224178 +
Hg19::chr7:79351016..79351020,+	p@chr7:79351016..79351020 +
Hg19::chr7:79510641..79510652,+	p@chr7:79510641..79510652 +
Hg19::chr7:79512462..79512500,+	p@chr7:79512462..79512500 +
Hg19::chr8:104664732..104664739,+	p@chr8:104664732..104664739 +
Hg19::chr8:21669826..21669866,-	p6@GFRA2
Hg19::chr8:21743352..21743370,-	p@chr8:21743352..21743370 -
Hg19::chr8:84824920..84824939,+	p1@ENST00000523678
Hg19::chr8:85087398..85087406,-	p@chr8:85087398..85087406 -
Hg19::chr8:85087424..85087449,-	p@chr8:85087424..85087449 -
Hg19::chr9:120324983..120325003,-	p@chr9:120324983..120325003 -
Hg19::chr9:26936427..26936432,-	p@chr9:26936427..26936432 -
Hg19::chrX:12989627..12989651,+	p@chrX:12989627..12989651 +
Hg19::chrX:12989653..12989663,+	p@chrX:12989653..12989663 +

Enriched pathways on this co-expression clusterSummary: Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons. Analyst: Emmanuel Dimont link to source dataset data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. Analyst: Erik Arner link to source dataset data

GO ID	GO name	FDR corrected p-value
GO:0007399	nervous system development	0.000171765853094219
GO:0048731	system development	0.0017186126688088
GO:0007275	multicellular organismal development	0.00189814892299092
GO:0032502	developmental process	0.00343797603353163
GO:0048856	anatomical structure development	0.00343797603353163
GO:0032501	multicellular organismal process	0.00780958209236935
GO:0010468	regulation of gene expression	0.00780958209236935
GO:0031323	regulation of cellular metabolic process	0.00848662852663684
GO:0019222	regulation of metabolic process	0.0118067418075942
GO:0005737	cytoplasm	0.0143010395208181
GO:0045449	regulation of transcription	0.0164689418232576
GO:0007417	central nervous system development	0.0164689418232576
GO:0019219	regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	0.0164689418232576
GO:0007501	mesodermal cell fate specification	0.0164689418232576
GO:0043231	intracellular membrane-bound organelle	0.0164689418232576
GO:0043227	membrane-bound organelle	0.0164689418232576
GO:0006350	transcription	0.0164689418232576
GO:0050794	regulation of cellular process	0.018115554288896
GO:0045165	cell fate commitment	0.0222460872433
GO:0048869	cellular developmental process	0.0222460872433
GO:0030154	cell differentiation	0.0222460872433
GO:0016070	RNA metabolic process	0.0222460872433
GO:0016167	glial cell line-derived neurotrophic factor receptor activity	0.0222460872433
GO:0050774	negative regulation of dendrite morphogenesis	0.0222460872433
GO:0006355	regulation of transcription, DNA-dependent	0.0235101997012121
GO:0050789	regulation of biological process	0.0236139168726967
GO:0006351	transcription, DNA-dependent	0.0247288604075228
GO:0032774	RNA biosynthetic process	0.0247288604075228
GO:0044424	intracellular part	0.0262669635116243
GO:0048814	regulation of dendrite morphogenesis	0.0266862685324948
GO:0043229	intracellular organelle	0.0286528967531669
GO:0043226	organelle	0.0286528967531669
GO:0010467	gene expression	0.0286528967531669
GO:0008266	poly(U) binding	0.0296413736381096
GO:0050773	regulation of dendrite development	0.0296413736381096
GO:0048813	dendrite morphogenesis	0.0296413736381096
GO:0005783	endoplasmic reticulum	0.0310095440878635
GO:0065007	biological regulation	0.0310095440878635
GO:0001537	N-acetylgalactosamine 4-O-sulfotransferase activity	0.0310095440878635
GO:0006911	phagocytosis, engulfment	0.0310095440878635
GO:0004994	somatostatin receptor activity	0.0310095440878635
GO:0003923	GPI-anchor transamidase activity	0.0310095440878635
GO:0016255	attachment of GPI anchor to protein	0.0310095440878635
GO:0007617	mating behavior	0.0348760096553614
GO:0019098	reproductive behavior	0.0348760096553614
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	0.0348760096553614
GO:0005515	protein binding	0.0363028831603493
GO:0001710	mesodermal cell fate commitment	0.0374235450638049
GO:0048333	mesodermal cell differentiation	0.0374235450638049
GO:0045211	postsynaptic membrane	0.0374235450638049
GO:0042765	GPI-anchor transamidase complex	0.0417900332832
GO:0044456	synapse part	0.0418186566332716
GO:0004459	L-lactate dehydrogenase activity	0.0435798547184848
GO:0019642	anaerobic glycolysis	0.0435798547184848
GO:0005844	polysome	0.0435798547184848
GO:0004457	lactate dehydrogenase activity	0.0475412938402424

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji links to source dataset uberon_data

Uber Anatomy
Ontology term	p-value	n
regional part of nervous system	1.67e-29	94
nervous system	1.67e-29	94
central nervous system	4.03e-29	82
neural tube	1.39e-23	57
neural rod	1.39e-23	57
future spinal cord	1.39e-23	57
neural keel	1.39e-23	57
brain	9.67e-23	69
future brain	9.67e-23	69
adult organism	4.38e-22	115
regional part of brain	1.89e-20	59
regional part of forebrain	4.67e-20	41
forebrain	4.67e-20	41
future forebrain	4.67e-20	41
anterior neural tube	9.53e-20	42
gray matter	3.15e-17	34
brain grey matter	3.15e-17	34
telencephalon	5.71e-17	34
neurectoderm	9.23e-17	90
regional part of telencephalon	2.12e-16	33
cerebral hemisphere	2.20e-16	32
neural plate	1.31e-15	86
presumptive neural plate	1.31e-15	86
regional part of cerebral cortex	1.40e-13	22
cerebral cortex	3.20e-13	25
pallium	3.20e-13	25
neocortex	1.88e-12	20
pre-chordal neural plate	3.47e-12	61
ectoderm	1.67e-11	173
presumptive ectoderm	1.67e-11	173
ectoderm-derived structure	1.31e-10	169
anterior region of body	1.42e-09	129
craniocervical region	1.42e-09	129
head	2.00e-08	123

Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon link to source data Novel motifs data Jaspar motifs data

Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}

ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. Analyst: Erik Arner link to source dataset data

No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. Analyst:NA link to data source data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

@@ Line 6: / Line 6: @@
 |ontology_enrichment_disease=
 |ontology_enrichment_uberon=UBERON:0000073!1.67e-29!94;UBERON:0001016!1.67e-29!94;UBERON:0001017!4.03e-29!82;UBERON:0005743!2.49e-28!86;UBERON:0001049!1.39e-23!57;UBERON:0005068!1.39e-23!57;UBERON:0006241!1.39e-23!57;UBERON:0007135!1.39e-23!57;UBERON:0000955!9.67e-23!69;UBERON:0006238!9.67e-23!69;UBERON:0007023!4.38e-22!115;UBERON:0002616!1.89e-20!59;UBERON:0002780!4.67e-20!41;UBERON:0001890!4.67e-20!41;UBERON:0006240!4.67e-20!41;UBERON:0003080!9.53e-20!42;UBERON:0002020!3.15e-17!34;UBERON:0003528!3.15e-17!34;UBERON:0001893!5.71e-17!34;UBERON:0002346!9.23e-17!90;UBERON:0002791!2.12e-16!33;UBERON:0001869!2.20e-16!32;UBERON:0003075!1.31e-15!86;UBERON:0007284!1.31e-15!86;UBERON:0002619!1.40e-13!22;UBERON:0000956!3.20e-13!25;UBERON:0000203!3.20e-13!25;UBERON:0001950!1.88e-12!20;UBERON:0003056!3.47e-12!61;UBERON:0000924!1.67e-11!173;UBERON:0006601!1.67e-11!173;UBERON:0004121!1.31e-10!169;UBERON:0000153!1.42e-09!129;UBERON:0007811!1.42e-09!129;UBERON:0000033!2.00e-08!123
+|tfbs_overrepresentation=0.815138,0.278982,0.664765,0.0694332,0.142918,0.851898,0.000490122,0.451531,0.000213328,0.0129852,0.410113,0.314955,0.00726206,0.278998,0.201266,0.00829879,0.425843,0.476993,0.0479688,0.215995,0.0589989,0.703644,0.0521665,0.195239,0.199301,0.0365961,0.443033,0.160581,7.40817e-06,5.60725e-05,0.847339,0.270487,0.733462,0.342098,0.993279,0.198215,1,0.217862,0.22891,0.0324271,0.00393231,0.00265497,0.017157,0.511432,0.0937397,0.134493,0.00840143,0.386401,0.751511,0.463636,0.556416,0.22237,3.08964e-06,0.564024,0.19516,0.0692495,0.316198,0.221567,0.381936,0.00924801,0.0693643,0.510685,0.139159,0.127084,9.30615e-05,0.17926,0.236725,0.00239134,0.780797,0.0508508,0.304143,0.000829214,0.0215631,0.0497031,0.104239,0.00926071,0.456779,0.110788,0.145919,0.0991029,0.446502,0.503134,0.211575,0.278116,0.684118,0.930732,0.010906,0.536129,0.993748,0.000392691,0.123923,0.311968,0.734123,0.866907,0.00697558,0.528408,0.65792,0.331281,0.176966,0.839411,0.0711907,0.260408,0.0990502,0.00726702,0.0100909,0.806269,0.0706398,0.38029,0.692876,0.997777,0.863586,0.91901,0.628361,0.371987,0.0950439,0.0416899,0.0182565,0.136933,0.137168,0.111167,0.123953,0.235346,0.0548393,0.000156166,0.667667,0.752216,0.000110026,0.661427,0.313301,0.993025,0.460976,0.338028,0.425966,0.812681,0.758258,0.00537077,0.361819,0.000107813,0.0382242,0.250227,0.0280026,0.000264944,0.769542,0.9618,0.999994,0.270661,0.00496503,0.061081,0.327323,0.233043,0.00277037,0.0014182,0.0134991,0.135334,0.0160572,0.205527,0.208926,0.515898,5.23046e-05,0.454382,0.043313,0.00143661,0.545992,0.015808,0.924213,0.0358861,0.179527,0.00309843,0.351248,0.00306239,0.0371038,0.0270219,0.989666,0.0538164,0.26345,0.155553,0.0919666,0.00810501,0.358936,0.271996,0.281775,0.247347,0.328551,0.000156008,0.652534,0.00654356,0.159319,0.181336,0.872557,0.00227165,0.129662,0.342643,0.612106,0.428503,0.371364,0.00993746,0.00323699,0.660796,0.00234823,0.46883,0.149579,0.0177279,0.663508,0.304425,0.0756058,0.680762,0.463596,0.00589036,0.854045,0.268377,0.130957,0.034443,0.00377531,0.103843,0.866102,0.477114,0.974625,0.0935765,0.000408541,0.894378,0.672691,0.0975135,0.353691,0.817638,0.0121093,0.859256,0.84773,5.26111e-06,0.0417255,6.44489e-08,0.999667,0.609201,9.83404e-05,0.518928,0.0366801,0.180705,0.0664919,0.177933,0.945214,0.055195,0.156052,0.5375,0.00203167,0.0564642,0.0729945,0.0254977,0.582543,0.857972,0.58433,0.299262,0.879839,0.625206,0.726671,0.0425641,0.0102847,0.387605,0.441369,0.106581,0.00299801,0.973664,0.322018,0.243033,0.944903,0.41206,0.00131221,0.00175211,2.45173e-05,0.171369,0.429804,0.12392,0.936967,1.05092e-05,0.390307,0.984568,0.00785767,0.155237,0.878099,0.0761706,0.834413,0.512897,0.877878,0.981936,0.48105,0.999992,0.646636,0.113189,0.29073,0.637811,0.0286198,0.593496,0.741398,0.611156,0.996311,0.117972,0.0347356,0.232927,0.0298965,0.104089,0.0330492,0.699588,0.254262,0.982691,0.0203594,0.952728,0.490057,0.981242,2.6457e-08,0.855405,0.261293,0.55037,0.680449,0.99756,0.989299,0.793736,0.0533255,0.157068,0.941604,0.470394,0.129068,0.852233,0.192241,0.953168,0.289051,0.0543277,0.297829,0.998288,0.387538,0.771349,0.00412512,0.909924,0.134046,0.639228,0.76943,0.384301,0.789053,0.127523,0.456067,0.84825,0.855234,0.00842447,0.997708,0.999999,0.999816,0.0232225,0.822112,0.629497,0.311251,0.257377,0.289938,0.995301,0.768907,0.48586,0.293943,0.681063,0.133514,0.807682,0.0679015,0.0334276,0.0112121,0.000738138,0.704315,0.310662,0.0667143,0.909893,0.33743,0.0768072,0.284931,0.990771,0.787085,0.937355,0.934796,0.847859,0.208861,0.344065,0.987253,0.990816,0.961058,0.919047,0.28996,0.987277,0.934982,0.978288,0.963731,0.211867,0.67926,0.949807,0.693317,0.36661,0.0582441,0.0774241,0.979535,0.631657,0.0035763,0.874283,0.979555,1,0.293137,0.352081,0.00168699,0.989071,0.912564,0.998881,0.156971,0.00598792,0.158442,0.268059,0.280555,0.754917,0.0059106,0.00485124,0.818505,0.00409208,0.473272,0.867045,0.170036,0.488628,0.938127,0.0231234,0.019094,0.777964,0.539331,0.986329,0.76091,0.63973,0.0206284,0.00319042,0.00365734,0.968134,0.12667,0.776231,0.182465,0.117579,0.214437,0.162624,0.815769,0.0470244,0.323232,0.976268,0.745159,0.288345,0.688137,0.951433,0.0537935,0.140304,0.517705,0.0385413,0.0213325,0.437447,0.787735,0.138914,0.403373,0.201535,0.0154686,0.936053,0.99845,0.94495,0.0860453,0.0614605,0.905551,0.00119406,0.264749,0.578391,0.741622,0.681604,0.942415,0.917219,0.970781,1.25903e-05,0.804998,0.405207,0.201229,0.0747182,0.000251131,0.205978,0.998245,0.507694,0.999382,0.00234472,0.978466,0.865457,0.985756,0.136986,0.992299,1.86422e-05,0.186626,9.4702e-07,0.0176942,9.38819e-06,0.0105544,3.6755e-07,0.033291,0.257298,0.000129054,0.547888,0.998218,0.156612,0.00507819,0.000828344,0.562259,0.154392,0.157586,0.945048,0.902663,0.12176,0.700324,0.999967,0.873144,0.742432,0.999948,0.000108806,0.24827,0.23603,0.0569621,0.228422,0.0348941,0.560692,0.374245,0.0104938,0.0230932,0.000476407,0.317387,0.149942,0.107697,0.64993,0.801407,0.84257,0.101331,0.0963523,0.764755,0.939899,0.2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 }}

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Coexpression cluster:C85: Difference between revisions

From FANTOM5_SSTAR

Revision as of 20:54, 8 August 2012

Phase1 CAGE Peaks

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