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MacroAPE 1083:TP53 Saos-p53-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1321;519;2012;951!2;2301;250;1604;648!3;91;3963;336;413!4;3150;567;269;817!5;1061;134;475;3133!6;10;14;4750;29!7;370;1950;101;2382!8;720;256...")
 
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9!10429-106D6;0.779273!10464-106H5;0.149233!10827-111C8;0.127048!10789-110H6;0.805634!10828-111C9;0.114934!10788-110H5;0.414463!10792-110H9;0.586369!10765-110E9;0.405923!10829-111D1;0.8626!10830-111D2;0.505013!10831-111D3;0.899464!10832-111D4;0.931695!10833-111D5;0.997021!10764-110E8;0.904519!10770-110F5;0.397807!10399-106A3;0.958162!10400-106A4;0.564137!10405-106A9;0.459931!10834-111D6;0.409993!10835-111D7;0.635838!10836-111D8;0.300065!10837-111D9;0.180463!10699-109G6;0.0557401!10802-111A1;0.439238!10796-110I4;0.064595!10010-101C1;0.353941!10810-111A9;0.856359!10421-106C7;0.0732771!10708-109H6;0.584669!12235-129G3;0.890822!12236-129G4;0.102867!12237-129G5;0.167366!10167-103B5;0.281275!10151-102I7;0.00233688!10428-106D5;0.00619361!10795-110I3;0.0870677!10805-111A4;0.930488!10052-101G7;0.522441!10189-103D9;0.370818!10589-108D4;0.431155!10425-106D2;0.194514!10427-106D4;0.115478!10702-109G9;0.889832!10432-106D9;0.114902!10496-107C1;0.494294!10718-109I7;0.848638!10011-101C2;0.533022!10053-101G8;0.158066!10686-109F2;0.925627!10084-102B3;0.976386!10012-101C3;0.00817577!10085-102B4;0.00863857!10482-107A5;0.000330791!10419-106C5;0.161721!10080-102A8;0.767323!10760-110E4;0.188401!10709-109H7;0.0283366!10710-109H8;0.670806!10703-109H1;0.779736!10719-109I8;0.543369!10642-109A3;0.0197106!10177-103C6;0.0334287!10164-103B2;0.0467123!10173-103C2;0.0149337!10166-103B4;0.00160077!10083-102B2;0.00465345!10188-103D8;0.00671652!10552-107I3;0.00699674!10553-107I4;0.880258!10013-101C4;0.110812!10536-107G5;0.104022!10618-108G6;0.968278!10423-106C9;0.865862!10785-110H2;0.0196271!12238-129G6;0.568771!12239-129G7;0.122106!12240-129G8;0.0609316!10416-106C2;0.223712!10801-110I9;0.844434!10766-110F1;0.653574!10824-111C5;0.0666244!10825-111C6;0.0551116!10826-111C7;0.0298022!10454-106G4;0.0124273!10409-106B4;0.0353693!10638-108I8;0.0774706!10636-108I6;0.046989!10513-107D9;0.335901!10420-106C6;0.246582!10082-102B1;0.0252838!10014-101C5;0.272232!10070-101I7;0.406743!10452-106G2;0.159082!10453-106G3;0.861771!10449-106F8;0.910705!10042-101F6;0.917277!10069-101I6;0.233419!10193-103E4;0.687972!10631-108I1;0.0228161!10438-106E6;0.559273!10488-107B2;0.132975!10196-103E7;0.379476!10071-101I8;0.469746!10071-101I8;0.498786!10041-101F5;0.000863235!10451-106G1;0.907134!10450-106F9;0.83804!10604-108F1;0.296748!10605-108F2;0.0384737!10606-108F3;0.222826!10603-108E9;0.0867605!10497-107C2;0.167314!10448-106F7;0.334725!10643-109A4;0.737904!10426-106D3;0.0256034!10431-106D8;0.335217!10197-103E8;0.244215!10443-106F2;0.0955623!10815-111B5;0.839071!10816-111B6;0.808425!10817-111B7;0.686952!10015-101C6;0.762089!10410-106B5;0.0176086!10054-101G9;0.0382974!10758-110E2;0.575774!10711-109H9;0.795157!10040-101F4;0.0215757!10470-106I2;0.00245469!10415-106C1;0.327118!10198-103E9;0.208215!10614-108G2;0.325033!10612-108F9;0.546074!10549-107H9;0.109166!10615-108G3;0.190676!10487-107B1;0.0105266!10433-106E1;0.73962!10688-109F4;0.0312254!10444-106F3;0.0755714!10444-106F3;0.233359!10485-107A8;0.190245!10413-106B8;0.234647!10175-103C4;0.00816099!10161-103A8;0.0696318!12131-128D7;0.0631694!10624-108H3;0.239103!10712-109I1;0.260015!10205-103F7;0.724943!10206-103F8;0.327867!10207-103F9;0.656315!10050-101G5;0.456446!10051-101G6;0.0594833!10016-101C7;0.978701!10046-101G1;0.763749!10778-110G4;0.903437!10633-108I3;0.218179!10818-111B8;0.854156!10819-111B9;0.0183311!10820-111C1;0.0300828!10484-107A7;0.0290628!10808-111A7;0.29257!10169-103B7;0.265416!10153-102I9;0.0103697!13425-144D5;0.0132488!13433-144E4;0.656658!13437-144E8;0.297128!11904-125F5;0.215822!11905-125F6;0.939385!10039-101F3;0.136111!10791-110H8;0.00291253!10017-101C8;0.0626317!10045-101F9;0.082945!10509-107D5;0.540658!10839-111E2;0.0960576!10692-109F8;0.971443!10079-102A7;0.423142!10078-102A6;0.65339!10721-110A1;0.889945!10569-108B2;0.33247!10570-108B3;0.420658!10571-108B4;0.288919!10647-109A8;0.580914!10752-110D5;0.245374!10782-110G8;0.113202!10726-110A6;0.597118!10018-101C9;0.00730253!10086-102B5;0.268974!10182-103D2;0.022318!10165-103B3;0.0650661!10499-107C4;0.217585!10408-106B3;0.676381!10019-101D1;0.422882!10068-101I5;0.114277!10075-102A3;0.385909!10077-102A5;0.168194!10727-110A7;0.512158!10775-110G1;0.111236!10412-106B7;0.990323!12231-129F8;0.274926!12232-129F9;0.483442!12233-129G1;0.455766!12234-129G2;0.443255!10414-106B9;0.409679!10170-103B8;0.718268!10183-103D3;0.00430062!10150-102I6;0.00263632!10174-103C3;0.00611523!10155-103A2;0.497987!10038-101F2;0.14338!10838-111E1;0.149753!10759-110E3;0.0968174!10514-107E1;0.202817!10465-106H6;0.535019!10691-109F7;0.456676!10843-111E6;0.348856!10844-111E7;0.326583!11747-123G1;0.331654!11748-123G2;0.722497!11749-123G3;0.646406!11750-123G4;0.896838!11751-123G5;0.534742!11840-124H4;0.981205!11752-123G6;0.672636!11753-123G7;0.0793016!11754-123G8;0.625056!11755-123G9;0.829736!11756-123H1;0.755276!11833-124G6;0.196958!11760-123H5;0.0638361!11836-124G9;0.200081!11758-123H3;0.437875!11835-124G8;0.107245!11762-123H7;0.071072!11838-124H2;0.0595466!11757-123H2;0.0624512!11759-123H4;0.051244!11761-123H6;0.606053!11842-124H6;0.0488696!11837-124H1;0.247158!10568-108B1;0.412579!13230-141I8;0.57224!13231-141I9;0.789783!10696-109G3;0.938536!10493-107B7;0.885816!10494-107B8;0.224355!10850-111F4;0.630855!10851-111F5;0.92658!10852-111F6;0.114984!10853-111F7;0.984153!10854-111F8;0.374307!10855-111F9;0.673717!10856-111G1;0.0247252!10847-111F1;0.059546!10846-111E9;0.279637!10848-111F2;0.0300643!10845-111E8;0.521328!10857-111G2;0.938945!10858-111G3;0.0179826!10156-103A3;0.559911!11901-125F2;0.00707743!11902-125F3;0.537282!11903-125F4;0.828204!10689-109F5;0.996283!10648-109A9;0.68324!10784-110H1;0.0909731!10744-110C6;0.926884!10772-110F7;0.0751655!10474-106I6;0.664117!10600-108E6;0.740267!10684-109E9;0.189076!12226-129F3;0.0374671!12227-129F4;0.000549338!10508-107D4;0.823994!10539-107G8;0.643586!10607-108F4;0.181693!10555-107I6;0.0791335!10774-110F9;0.481715!10637-108I7;0.692123!10663-109C6;0.00847447!10728-110A8;0.234241!10729-110A9;0.139757!10430-106D7;0.535942!10730-110B1;0.869262!10813-111B3;0.205037!10812-111B2;0.25726!10037-101F1;0.298739!10172-103C1;0.00996857!10163-103B1;0.000639558!10076-102A4;0.0102644!10073-102A1;0.00202163!10036-101E9;0.00010687!10195-103E6;0.00288771!10277-104E7;0.00622055!10434-106E2;0.216872!10550-107I1;0.0434631!10545-107H5;0.405564!10544-107H4;0.223485!10704-109H2;0.832835!10510-107D6;0.245381!10558-107I9;0.532869!10020-101D2;0.123778!10732-110B3;0.833831!10049-101G4;0.23419!10698-109G5;0.079365!10437-106E5;0.123556!10417-106C3;0.338976!10035-101E8;0.905259!10171-103B9;0.00285073!10157-103A4;0.0101373!10034-101E7;0.00551899!10072-101I9;0.00552601!10199-103F1;0.00122869!10200-103F2;0.30962!10697-109G4;0.655528!10723-110A3;0.0924036!10179-103C8;0.0438771!10160-103A7;0.0592242!10180-103C9;0.0937332!10162-103A9;0.557305!10021-101D3;0.202477!10840-111E3;0.221282!10706-109H4;0.464922!10033-101E6;0.416633!10032-101E5;0.0400173!10490-107B4;0.00375415!10439-106E7;0.386466!10022-101D4;0.734005!10176-103C5;0.154304!10469-106I1;0.00458484!10067-101I4;0.523868!10411-106B6;0.982614!10471-106I3;0.388669!10030-101E3;0.180665!10475-106I7;0.281538!10787-110H4;0.227061!10477-106I9;0.465428!10695-109G2;0.0567714!11771-123I7;0.226817!11772-123I8;0.0116274!11773-123I9;0.000650095!10093-102C3;0.0122545!10442-106F1;0.112383!10442-106F1;0.797544!10201-103F3;0.462529!10639-108I9;0.24695!11843-124H7;0.253153!11841-124H5;0.819806!10693-109F9;0.865787!10436-106E4;0.049728!10483-107A6;0.872407!10282-104F3;0.503119!10023-101D5;0.549971!10066-101I3;0.411722!10065-101I2;0.547731!10800-110I8;0.0116548!10610-108F7;0.880729!10841-111E4;0.0092536!10541-107H1;0.0291093!10842-111E5;0.261023!10562-108A4;0.0418277!10024-101D6;0.600057!10064-101I1;0.676578!10609-108F6;0.11997!10048-101G3;0.137214!10781-110G7;0.769679!10181-103D1;0.366961!10159-103A6;0.275216!10056-101H2;0.278487!10737-110B8;0.137222!10025-101D7;0.771094!10044-101F8;0.840996!10424-106D1;0.978645!10463-106H4;0.326701!10616-108G4;0.40927!10486-107A9;0.00218128!10062-101H8;0.296681!10202-103F4;0.997863!10158-103A5;0.310642!10441-106E9;0.361359!10031-101E4;0.0978832!10063-101H9;0.00470342!10063-101H9;3.66074e-05!11763-123H8;0.293372!11765-123I1;0.644921!11768-123I4;0.396698!10807-111A6;0.431601!10790-110H7;0.97414!10798-110I6;0.260187!10786-110H3;0.786748!10591-108D6;0.261968!10593-108D8;0.343027!10590-108D5;0.618503!10026-101D8;0.612109!10096-102C6;0.649412!10168-103B6;0.0810591!10154-103A1;0.0141284!10209-103G2;0.0739365!10061-101H7;0.22101!10027-101D9;0.207994!10043-101F7;0.797767!10783-110G9;0.143267!10028-101E1;0.670332!10060-101H6;0.769086!10203-103F5;0.628719!10059-101H5;0.142886!10047-101G2;0.256197!10029-101E2;0.0339258!10058-101H4;0.0211227!10418-106C4;0.0265942!10492-107B6;0.509782!10694-109G1;0.0488741!10797-110I5;0.094934!10057-101H3;0.282491!10100-102D1;0.318199!10055-101H1;0.933103!10204-103F6;0.10011!10191-103E2;0.375815!10563-108A5;0.568063
|name=TP53_Saos-p53-ChIP-Seq/Homer
|name=TP53_Saos-p53-ChIP-Seq/Homer
|tomtom_result=TP53#MA0106.1;-1;6.84487e-10;3.25816e-07;6.48715e-07;19;GACATGTCCAGACATGTCCC;ACATGCCCGGGCATGTCCGG;-!Tcfcp2l1#MA0145.1;-2;0.00050241;0.239147;0.133688;14;GACATGTCCAGACATGTCCC;CTGGTTTGAACTGG;-!ARO80#MA0273.1;0;0.00121261;0.577204;0.229848;20;GACATGTCCAGACATGTCCC;GATAATTCTCGGCAAGTATGT;+!sd#MA0243.1;-6;0.00221415;1.05394;0.318538;12;GACATGTCCAGACATGTCCC;CCGAGGAATGTC;-!Zfx#MA0146.1;-2;0.00430816;2.05068;0.500705;14;GACATGTCCAGACATGTCCC;GGGGCCGAGGCCTG;+!GSM1#MA0308.1;-1;0.0102975;4.90162;0.887215;19;GACATGTCCAGACATGTCCC;TATACTCCGGAGTTTTTTAAT;-!znf143#MA0088.1;-2;0.0151534;7.213;0.995524;18;GACATGTCCAGACATGTCCC;GATTTCCCATAATGCCTTGC;+!Pax4#MA0068.1;3;0.0180225;8.57869;0.995524;20;GACATGTCCAGACATGTCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+
}}
}}

Latest revision as of 12:54, 7 September 2012

Full Name: TP53_Saos-p53-ChIP-Seq/Homer

Motif matrix
POACGT
113215192012951
223012501604648
3913963336413
43150567269817
510611344753133
61014475029
737019501012382
872025653751143
980717246341638
1016666581638841
1111583752521749
1223871061945365
133447361914
1431274801391057
157922595193233
16399221409786
1760516472742277
18101319885241278
1991316666631561
201220127711581148

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TP53#MA0106.1-16.84487e-103.25816e-076.48715e-0719GACATGTCCAGACATGTCCCACATGCCCGGGCATGTCCGG-
Tcfcp2l1#MA0145.1-20.000502410.2391470.13368814GACATGTCCAGACATGTCCCCTGGTTTGAACTGG-
ARO80#MA0273.100.001212610.5772040.22984820GACATGTCCAGACATGTCCCGATAATTCTCGGCAAGTATGT+
sd#MA0243.1-60.002214151.053940.31853812GACATGTCCAGACATGTCCCCCGAGGAATGTC-
Zfx#MA0146.1-20.004308162.050680.50070514GACATGTCCAGACATGTCCCGGGGCCGAGGCCTG+
GSM1#MA0308.1-10.01029754.901620.88721519GACATGTCCAGACATGTCCCTATACTCCGGAGTTTTTTAAT-
znf143#MA0088.1-20.01515347.2130.99552418GACATGTCCAGACATGTCCCGATTTCCCATAATGCCTTGC+
Pax4#MA0068.130.01802258.578690.99552420GACATGTCCAGACATGTCCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
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