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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0527413783866199,0.107744855247029,0.0370367922473154,0.127893569522672,0.0333321253665857,0.148135569080281,0.0363974770700186,0.367810303315271,0,0.385611106405619,0.0952569271366783,0.105247439647798,0.23699873326013,0,0.0411126530948397,0,0,0,0,0,0,0.0755555083173967,0,0,0.827063870968093,1.35270851736924,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409050573698022,0.558264676740928,0.404457954206829,0.671558636169446,0.563450471405484,0.386949193329338,0,0,0,0.180274689346406,0.477950555464688,0.663673100064972,0.583474282359613,0.561692158611993,0.826365270042997,0.480640076107375,0.443824404641448,0.447126921491343,0.695084452562842,0.658240469498824,0.490969359070988,0.609993994222674,0.389459279914977,0.67203614682108,0.461337122353058,0.452216998893405,0.587855821538975,0.567590650819664,0.518552275128282,0.921881489357994,0.322458878535173,0.518299646329405,0.557664898603858,0.646309943879064,0.55165172980273,0.48906556937507,0.545634506877518,0.387387244804406,0.574073937668061,0.562972440582173,0.568795472202898,0.463235718656125,0,0.0316393102377815,0.198582584603541,0,0.288889141948448,0.679239086613643,0.750378086273648,0.804570284465672,0,0,0.100296779313498,0,0,0,0,0,0.217345243425905,0.178032475525152,0.177687811491981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0983461768813133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0754257438189354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927359537809747,0,0,0,0,0,0,0,0.603774852447547,0.420239194365589,0,0,0,0,0,0,0.289259909658879,0.250634044192069,0.527585744288204,0.386287168639666,0.276736241266501,0.431115853574368,0.257587724242375,0.391160897340021,0.252992651410535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0562185712770556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0527554171614426,0,0.00654625729802399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00393417641123286,0,0,0.221664011867973,0.0716713282549662,0.17714787034375,0,0,0,0,0,0.582490536396736,0.453517235932598,0.434359137099159,0.83524706039321,0.617647092229927,0.604396236116953,0.568212287967179,0.447357266760456,0.449103283876296,0.487285649470539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000548!8.05e-39!115;CL:0000255!8.05e-39!115;CL:0002371!3.07e-37!118;CL:0000034!4.24e-36!97;CL:0000723!8.60e-35!91;CL:0000048!8.60e-35!91;CL:0002319!1.87e-33!43;CL:0000055!5.54e-33!49;CL:0000221!2.32e-32!44;CL:0000133!2.32e-32!44;CL:0002321!3.32e-29!70;CL:0000540!8.82e-27!33;CL:0000047!8.82e-27!33;CL:0000031!8.82e-27!33;CL:0000404!8.82e-27!33;CL:0000393!3.96e-26!39;CL:0000211!3.96e-26!39;CL:0000117!4.91e-22!23;CL:0000337!4.91e-22!23;CL:0000219!3.28e-16!54;CL:0002320!4.75e-12!46;CL:0000134!4.75e-12!46;CL:0002031!2.09e-08!25;CL:0002453!3.89e-08!8;CL:0000839!8.94e-08!13;CL:0000333!2.62e-07!10;CL:0000095!2.62e-07!10;CL:0000243!2.62e-07!10;CL:0000123!2.62e-07!10;CL:0000125!2.62e-07!10;CL:0000030!2.62e-07!10;CL:0000339!2.62e-07!10;CL:0000107!4.87e-07!9;CL:0002609!6.41e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!6.74e-26!73;UBERON:0001016!9.01e-26!75;UBERON:0002020!5.39e-22!34;UBERON:0003528!1.78e-17!29;UBERON:0002791!1.78e-17!29;UBERON:0001893!1.78e-17!29;UBERON:0004121!8.17e-17!95;UBERON:0000924!8.17e-17!95;UBERON:0006601!8.17e-17!95;UBERON:0000073!1.40e-15!54;UBERON:0000956!4.05e-14!21;UBERON:0001869!4.05e-14!21;UBERON:0000203!4.05e-14!21;UBERON:0001049!4.74e-13!52;UBERON:0005068!4.74e-13!52;UBERON:0006241!4.74e-13!52;UBERON:0007135!4.74e-13!52;UBERON:0002619!1.25e-12!17;UBERON:0002384!4.75e-12!46;UBERON:0002346!3.13e-11!64;UBERON:0003075!3.13e-11!64;UBERON:0007284!3.13e-11!64;UBERON:0002780!6.94e-11!39;UBERON:0001890!6.94e-11!39;UBERON:0006240!6.94e-11!39;UBERON:0003080!2.03e-10!40;UBERON:0002021!2.70e-10!10;UBERON:0000411!2.70e-10!10;UBERON:0001950!2.70e-10!10;UBERON:0002616!5.44e-10!46;UBERON:0000955!1.33e-09!47;UBERON:0006238!1.33e-09!47;UBERON:0010371!1.44e-08!73;UBERON:0011216!3.13e-07!194;UBERON:0003056!3.78e-07!49;UBERON:0002410!4.87e-07!9;UBERON:0002371!6.75e-07!16
}}
}}

Revision as of 16:11, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:30698559..30698561,-p@chr10:30698559..30698561
-
Mm9::chr11:110813223..110813228,-p@chr11:110813223..110813228
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Mm9::chr11:11954302..11954310,-p1@ENSMUST00000082868
Mm9::chr12:55340225..55340232,+p1@ENSMUST00000082671
Mm9::chr13:96667070..96667075,-p1@ENSMUST00000083932
Mm9::chr3:65892179..65892181,-p1@ENSMUST00000082588
Mm9::chr5:34873297..34873300,+p1@ENSMUST00000157707


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
animal cell8.05e-39115
eukaryotic cell8.05e-39115
somatic cell3.07e-37118
stem cell4.24e-3697
somatic stem cell8.60e-3591
multi fate stem cell8.60e-3591
neural cell1.87e-3343
non-terminally differentiated cell5.54e-3349
ectodermal cell2.32e-3244
neurectodermal cell2.32e-3244
embryonic cell3.32e-2970
neuron8.82e-2733
neuronal stem cell8.82e-2733
neuroblast8.82e-2733
electrically signaling cell8.82e-2733
electrically responsive cell3.96e-2639
electrically active cell3.96e-2639
CNS neuron (sensu Vertebrata)4.91e-2223
neuroblast (sensu Vertebrata)4.91e-2223
motile cell3.28e-1654
connective tissue cell4.75e-1246
mesenchymal cell4.75e-1246
hematopoietic lineage restricted progenitor cell2.09e-0825
oligodendrocyte precursor cell3.89e-088
myeloid lineage restricted progenitor cell8.94e-0813
migratory neural crest cell2.62e-0710
neuron associated cell2.62e-0710
glial cell (sensu Vertebrata)2.62e-0710
neuron associated cell (sensu Vertebrata)2.62e-0710
glial cell2.62e-0710
glioblast2.62e-0710
glioblast (sensu Vertebrata)2.62e-0710
autonomic neuron4.87e-079
neuron of cerebral cortex6.41e-076

Uber Anatomy
Ontology termp-valuen
central nervous system6.74e-2673
nervous system9.01e-2675
gray matter5.39e-2234
brain grey matter1.78e-1729
regional part of telencephalon1.78e-1729
telencephalon1.78e-1729
ectoderm-derived structure8.17e-1795
ectoderm8.17e-1795
presumptive ectoderm8.17e-1795
regional part of nervous system1.40e-1554
cerebral cortex4.05e-1421
cerebral hemisphere4.05e-1421
pallium4.05e-1421
neural tube4.74e-1352
neural rod4.74e-1352
future spinal cord4.74e-1352
neural keel4.74e-1352
regional part of cerebral cortex1.25e-1217
connective tissue4.75e-1246
neurectoderm3.13e-1164
neural plate3.13e-1164
presumptive neural plate3.13e-1164
regional part of forebrain6.94e-1139
forebrain6.94e-1139
future forebrain6.94e-1139
anterior neural tube2.03e-1040
occipital lobe2.70e-1010
visual cortex2.70e-1010
neocortex2.70e-1010
regional part of brain5.44e-1046
brain1.33e-0947
future brain1.33e-0947
ecto-epithelium1.44e-0873
organ system subdivision3.13e-07194
pre-chordal neural plate3.78e-0749
autonomic nervous system4.87e-079
bone marrow6.75e-0716


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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