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MCL coexpression mm9:2020: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.01e-07!23;CL:0000337!1.01e-07!23
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!3.26e-13!54;UBERON:0001049!4.20e-12!52;UBERON:0005068!4.20e-12!52;UBERON:0006241!4.20e-12!52;UBERON:0007135!4.20e-12!52;UBERON:0002020!2.39e-11!34;UBERON:0002346!1.34e-10!64;UBERON:0003075!1.34e-10!64;UBERON:0007284!1.34e-10!64;UBERON:0010371!2.13e-10!73;UBERON:0000955!3.16e-10!47;UBERON:0006238!3.16e-10!47;UBERON:0002616!8.90e-10!46;UBERON:0003528!1.77e-09!29;UBERON:0002791!1.77e-09!29;UBERON:0001893!1.77e-09!29;UBERON:0003056!2.61e-09!49;UBERON:0003080!3.38e-09!40;UBERON:0002780!1.14e-08!39;UBERON:0001890!1.14e-08!39;UBERON:0006240!1.14e-08!39;UBERON:0004121!4.05e-08!95;UBERON:0000924!4.05e-08!95;UBERON:0006601!4.05e-08!95;UBERON:0001017!5.02e-08!73;UBERON:0002021!8.22e-08!10;UBERON:0000411!8.22e-08!10;UBERON:0001950!8.22e-08!10;UBERON:0001016!2.75e-07!75
}}
}}

Revision as of 17:48, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:104664013..104664065,-p1@Ddx24
Mm9::chr14:103745982..103746058,-p1@Mycbp2
Mm9::chr7:63305505..63305587,+p1@Herc2
Mm9::chr9:86360780..86360826,+p1@Dopey1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.01e-0723
neuroblast (sensu Vertebrata)1.01e-0723

Uber Anatomy
Ontology termp-valuen
regional part of nervous system3.26e-1354
neural tube4.20e-1252
neural rod4.20e-1252
future spinal cord4.20e-1252
neural keel4.20e-1252
gray matter2.39e-1134
neurectoderm1.34e-1064
neural plate1.34e-1064
presumptive neural plate1.34e-1064
ecto-epithelium2.13e-1073
brain3.16e-1047
future brain3.16e-1047
regional part of brain8.90e-1046
brain grey matter1.77e-0929
regional part of telencephalon1.77e-0929
telencephalon1.77e-0929
pre-chordal neural plate2.61e-0949
anterior neural tube3.38e-0940
regional part of forebrain1.14e-0839
forebrain1.14e-0839
future forebrain1.14e-0839
ectoderm-derived structure4.05e-0895
ectoderm4.05e-0895
presumptive ectoderm4.05e-0895
central nervous system5.02e-0873
occipital lobe8.22e-0810
visual cortex8.22e-0810
neocortex8.22e-0810
nervous system2.75e-0775


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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