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MCL coexpression mm9:2786: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001007!5.00e-21!116;UBERON:0001555!5.00e-21!116;UBERON:0007026!5.00e-21!116;UBERON:0005409!8.37e-21!47;UBERON:0004119!3.53e-20!118;UBERON:0000925!3.53e-20!118;UBERON:0006595!3.53e-20!118;UBERON:0004921!6.51e-20!114;UBERON:0000160!2.27e-18!31;UBERON:0005178!2.21e-10!17;UBERON:0005181!2.21e-10!17;UBERON:0002224!2.21e-10!17;UBERON:0000915!2.21e-10!17;UBERON:0008947!2.21e-10!17;UBERON:0003258!2.21e-10!17;UBERON:0000344!1.08e-08!15;UBERON:0005153!1.28e-08!17;UBERON:0002048!1.55e-08!14;UBERON:0000117!1.55e-08!14;UBERON:0000171!1.55e-08!14;UBERON:0000170!1.55e-08!14;UBERON:0005597!1.55e-08!14;UBERON:0000118!1.55e-08!14;UBERON:0001242!1.11e-07!13;UBERON:0000060!1.11e-07!13;UBERON:0001262!1.11e-07!13;UBERON:0004786!1.11e-07!13
}}
}}

Revision as of 19:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:58646974..58647003,-p1@Foxa1
Mm9::chr12:58647768..58647780,-p@chr12:58647768..58647780
-
Mm9::chr8:85724755..85724773,+p@chr8:85724755..85724773
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
digestive system5.00e-21116
digestive tract5.00e-21116
primitive gut5.00e-21116
gastrointestinal system8.37e-2147
endoderm-derived structure3.53e-20118
endoderm3.53e-20118
presumptive endoderm3.53e-20118
subdivision of digestive tract6.51e-20114
intestine2.27e-1831
thoracic cavity element2.21e-1017
thoracic segment organ2.21e-1017
thoracic cavity2.21e-1017
thoracic segment of trunk2.21e-1017
respiratory primordium2.21e-1017
endoderm of foregut2.21e-1017
mucosa1.08e-0815
epithelial bud1.28e-0817
lung1.55e-0814
respiratory tube1.55e-0814
respiration organ1.55e-0814
pair of lungs1.55e-0814
lung primordium1.55e-0814
lung bud1.55e-0814
intestinal mucosa1.11e-0713
anatomical wall1.11e-0713
wall of intestine1.11e-0713
gastrointestinal system mucosa1.11e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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