UBERON:0000925
From FANTOM5_SSTAR
| Name: | endoderm | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm] | |
| Xrefs: |
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| Synonyms: | "entoderm" RELATED [] | |
| Comments: | This class was created automatically from a combination of ontologies | |
| Alt_id: | UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017 | |
| Subset: |
uberon_slim vertebrate_core |
Endoderm2.png]
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000923(germ layer) |
|---|---|
| develops_from: | UBERON:0006595(presumptive endoderm) |
Children
| is a: | UBERON:0009550 (endoderm of foregut-midgut junction) |
|---|---|
| develops from: | UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001040 (yolk sac),UBERON:0003258 (endoderm of foregut),UBERON:0003921 (pancreas primordium),UBERON:0004119 (endoderm-derived structure),UBERON:0004185 (endodermal part of digestive tract),UBERON:0004340 (allantois),UBERON:0005911 (endo-epithelium),UBERON:0007026 (primitive gut),UBERON:0007690 (early pharyngeal endoderm),UBERON:0009722 (entire pharyngeal arch endoderm) |
| part of: | CL:0000223 (endodermal cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000925 (endoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
