Coexpression cluster:C1115: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|tf_chipseq_enrich=CHD2#1106;5:7.3885877386549:0.000149868960082067:0.00193141218188685!E2F1#1869;5:3.50527801062809:0.00509055358791505:0.0236837280010807!E2F4#1874;3:5.42916870655047:0.0135067508217614:0.0477032075030923!EGR1#1958;5:3.56298506772153:0.00472235121105893:0.0222552068106937!ELF1#1997;5:3.04149854200538:0.00971956226937075:0.0365565169926106!EP300#2033;4:3.87082384355611:0.0114256758668448:0.041859408631473!FOS#2353;4:5.14168874793966:0.00404209586567825:0.0193479284163147!GTF2B#2959;4:18.2536171053281:3.11241110089347e-05:0.0006292239701243!GTF2F1#2962;3:5.45985466146756:0.013298821684157:0.0470213161985129!HEY1#23462;6:3.46295232266204:0.00126789009587212:0.00850354313657776!IRF1#3659;4:4.36409357346509:0.0073934558242782:0.0305493405931236!NANOG#79923;3:12.5334764918626:0.00126105218950347:0.00846747007969353!NFKB1#4790;5:3.9200453029956:0.00303658142448461:0.0161155306363!NFYA#4800;6:15.793354885569:1.7032585757508e-07:9.38220582240704e-06!NFYB#4801;6:14.3655370744598:2.99325254948281e-07:1.50947514734638e-05!PAX5#5079;4:3.81118030353019:0.0120826168155519:0.0438204124596112!POLR2A#5430;7:2.14745317655807:0.00474763644761028:0.0223219917594188!REST#5978;5:6.89287765437716:0.000209438858484651:0.00243825492601477!RFX5#5993;6:10.3267807090244:2.12421369818918e-06:7.73538195345816e-05!SP1#6667;6:4.88432689554934:0.000173636112229091:0.00211282557673238!SP2#6668;4:14.9448745679112:6.81071539656055e-05:0.00108762126192873!TAF1#6872;6:2.86546824492454:0.00372833020747146:0.0185818696510671!TBP#6908;6:3.17723201751119:0.00207411205185266:0.0120149863322114!TCF7L2#6934;4:6.15438660750705:0.00206467614813804:0.0119689560521419!TRIM28#10155;3:7.96736787654108:0.00462234126315646:0.0218311716719937!YY1#7528;5:3.50797910703847:0.00507257067280898:0.0236095284325281 | |tf_chipseq_enrich=CHD2#1106;5:7.3885877386549:0.000149868960082067:0.00193141218188685!E2F1#1869;5:3.50527801062809:0.00509055358791505:0.0236837280010807!E2F4#1874;3:5.42916870655047:0.0135067508217614:0.0477032075030923!EGR1#1958;5:3.56298506772153:0.00472235121105893:0.0222552068106937!ELF1#1997;5:3.04149854200538:0.00971956226937075:0.0365565169926106!EP300#2033;4:3.87082384355611:0.0114256758668448:0.041859408631473!FOS#2353;4:5.14168874793966:0.00404209586567825:0.0193479284163147!GTF2B#2959;4:18.2536171053281:3.11241110089347e-05:0.0006292239701243!GTF2F1#2962;3:5.45985466146756:0.013298821684157:0.0470213161985129!HEY1#23462;6:3.46295232266204:0.00126789009587212:0.00850354313657776!IRF1#3659;4:4.36409357346509:0.0073934558242782:0.0305493405931236!NANOG#79923;3:12.5334764918626:0.00126105218950347:0.00846747007969353!NFKB1#4790;5:3.9200453029956:0.00303658142448461:0.0161155306363!NFYA#4800;6:15.793354885569:1.7032585757508e-07:9.38220582240704e-06!NFYB#4801;6:14.3655370744598:2.99325254948281e-07:1.50947514734638e-05!PAX5#5079;4:3.81118030353019:0.0120826168155519:0.0438204124596112!POLR2A#5430;7:2.14745317655807:0.00474763644761028:0.0223219917594188!REST#5978;5:6.89287765437716:0.000209438858484651:0.00243825492601477!RFX5#5993;6:10.3267807090244:2.12421369818918e-06:7.73538195345816e-05!SP1#6667;6:4.88432689554934:0.000173636112229091:0.00211282557673238!SP2#6668;4:14.9448745679112:6.81071539656055e-05:0.00108762126192873!TAF1#6872;6:2.86546824492454:0.00372833020747146:0.0185818696510671!TBP#6908;6:3.17723201751119:0.00207411205185266:0.0120149863322114!TCF7L2#6934;4:6.15438660750705:0.00206467614813804:0.0119689560521419!TRIM28#10155;3:7.96736787654108:0.00462234126315646:0.0218311716719937!YY1#7528;5:3.50797910703847:0.00507257067280898:0.0236095284325281 | ||
|tfbs_overrepresentation=0.31043,0.131575,0.340408,0.107813,0.405466,0.547045,0.00491429,0.3551,0.0746874,0.0589549,0.0487584,0.448908,0.386236,0.269614,0.313114,0.138515,0.0498069,0.214302,0.119001,0.0298564,0.0865129,0.0442753,0.180923,0.20757,0.0943256,0.432377,0.0183096,0.199011,0.303793,0.204444,0.414424,0.246136,0.0415685,0.42006,0.148393,0.186108,0.754786,0.097401,0.258596,0.148774,0.210798,0.0564873,0.296737,0.377815,0.0370943,0.0825288,0.0864669,0.373342,0.240639,0.260266,0.323223,0.12188,0.156121,0.203677,0.403772,0.0873518,0.232986,0.427667,0.173296,0.229205,0.0673274,0.314503,0.0301481,0.168316,0.122724,0.113864,0.637,0.134457,0.189423,0.34721,0.670888,0.150845,0.195543,0.0361929,0.0173573,0.0394864,0.210826,0.0989984,0.0847661,0.0168408,0.209062,0.451469,0.0963703,0.247724,0.19247,0.0314,0.143736,0.421411,0.374735,0.140328,0.18877,0.111901,0.208559,0.107066,0.188008,0.248084,0.152286,0.322402,0.203166,0.00721151,0.0087069,0.529658,0.300234,0.0843602,0.0209057,0.0929061,0.149379,0.250565,0.0520139,0.00671571,0.375285,0.0775356,0.314757,0.0407805,0.220427,0.0769904,0.0468147,0.127234,0.294794,0.184794,0.346582,0.431052,0.00560677,0.188824,0.222747,0.365096,0.198942,0.034178,0.185876,0.286955,0.133529,0.165976,0.128445,0.0523619,0.269253,0.234279,0.144853,0.124383,0.0754012,0.00920461,0.052339,0.272785,0.412653,0.326814,0.879733,0.154324,0.215565,0.00123741,0.0885156,0.259543,0.0971196,0.30366,0.371915,0.0609284,0.0968299,0.253074,0.0145777,0.453904,0.116496,0.0769293,0.122873,0.0233936,0.251281,0.311437,0.0399061,0.246608,0.00426515,0.272323,0.0916381,0.582261,0.370083,0.292316,0.0601203,0.121785,0.17666,0.197691,0.297301,0.373889,0.077932,0.0811784,0.332099,0.262763,0.0627829,0.249166,0.16364,0.255634,0.376054,0.0912436,0.18278,0.0105468,0.232364,0.38363,0.263667,0.45461,0.243403,0.106408,0.173147,0.135052,0.150784,0.237426,0.196091,0.135293,0.0704675,0.135734,0.289872,0.0342294,0.0399491,5.07818e-05,0.102289,0.367697,0.103767,0.226759,0.260173,0.243859,0.58295,0.350868,0.341984,0.219863,0.140859,0.224003,0.300341,0.662833,0.0604577,0.336135,0.163924,0.270849,0.294471,0.189218,0.135411,0.134214,0.314603,0.0282869,0.0949171,0.169481,0.209657,0.204086,0.106746,0.509502,0.340697,0.431213,0.375058,0.264811,0.214704,0.183242,0.25057,0.290614,0.179951,0.241366,0.296754,0.252043,0.0626794,0.37985,0.380877,0.213951,0.214075,0.333636,0.232558,0.409093,0.154888,0.333486,0.138561,0.361831,0.340466,0.273737,0.0786852,0.179028,0.179229,0.201771,0.254117,0.16741,0.532883,0.141494,0.0324789,0.401674,0.190495,0.0865316,0.27777,0.337299,0.787698,0.69091,0.419083,0.575229,0.576263,0.340306,0.247108,0.408427,0.507115,0.74825,0.297951,0.5782,0.210893,0.608158,0.328631,0.606605,0.106354,0.892655,0.523169,0.553463,0.703138,0.330644,0.332445,0.880156,0.38355,0.283193,0.373708,0.723928,0.0308965,0.60842,0.437154,0.727324,0.668415,0.765804,0.100114,0.523159,0.511801,0.660738,0.356647,0.457495,0.00526804,0.530579,0.567514,0.453429,0.22357,0.445808,0.485483,0.634774,0.183544,0.586014,0.597024,0.192923,0.750148,0.595517,0.133385,0.554465,0.779369,0.741035,0.664607,0.596959,0.374773,0.374876,0.161592,0.0218745,0.400756,0.528337,0.131722,0.380732,0.62916,0.832986,0.16893,0.199533,0.804395,0.814166,0.821424,0.144423,0.537738,0.439461,0.340223,0.14951,0.162309,0.379192,0.62513,0.124197,0.332632,0.0375631,0.480726,0.281955,0.558038,0.163285,0.437649,0.218504,0.301843,0.102102,0.165804,0.454926,0.231956,0.61432,0.483874,0.557198,0.625165,0.0673817,0.549109,0.236455,0.0552985,0.176971,0.340787,0.144312,0.453428,0.248259,0.0154528,0.327395,0.134933,0.364981,0.20071,0.363777,0.505343,0.177621,0.614145,0.305806,0.307188,0.106996,0.667503,0.749333,0.762469,0.0315444,0.320625,0.10531,0.291113,0.503499,0.286678,0.215083,0.550031,0.555733,0.542255,0.257904,0.574375,0.57326,0.883094,0.224884,0.249835,0.00839056,0.508647,0.646316,0.0229709,0.70335,0.133613,0.090654,0.42833,0.412651,0.416603,0.253098,0.445827,0.738461,0.16695,0.619771,0.0420981,0.180871,0.300014,0.0557631,0.820036,0.33353,0.0268228,0.662621,0.460268,0.387548,0.195754,0.133496,0.823955,0.898787,0.630454,0.271742,0.633856,0.443447,0.122637,0.908283,0.901882,0.588029,0.15528,0.125135,0.392877,0.172615,0.129203,0.304883,0.445623,0.412193,0.39601,0.156956,0.39153,0.241931,0.54931,0.00503491,0.569749,0.270589,0.2868,0.231853,0.00712674,0.140425,0.103775,0.0412928,0.570618,0.535059,0.684902,0.105116,0.351863,0.247203,0.227166,0.197433,0.190714,0.333925,0.232295,0.0993709,0.00905448,0.264955,0.0421084,0.42369,0.394858,0.62923,0.112748,0.182834,0.148755,0.374546,0.00283178,0.438923,0.243744,0.398206,0.28169,0.0865639,0.108827,0.405826,0.342943,0.273081,0.363066,0.378645,0.35119,0.192669,0.208253,0.0260665,0.444023,0.232159,0.528175,0.0111948,0.359315,0.298797,0.425775,0.0687597,0.280435,0.10082,0.117938,0.421126,0.321571,0.176362,0.212715,0.334514,0.264825,0.19886,0.125399,0.539304,0.817594,0.291561,0.0337354,0.146629,0.426032,0.440859,0.177111,0.167984,0.337564,0.394053,0.123448,0.17256,0.126216,0.0947479,0.0787488,0.0883646,0.496336,0.353144,0.407665,0.11039,0.0750505,0.293511,0.0754745,0.0804304,0.439214,0.0896836,0.133679,0.361823,0.262768,0.235824,0.23812,0.506939,0.0654706,0.844302,0.305348,0.0883079,0.192275,0.123717,0.3044,0.494788,0.435034,0.388488,0.27954,0.326131,0.132368,0.00017154,0.168686,0.35711,0.180717,0.375467,0.246637,0.00655126,0.299453,0.347601,0.297851,0.195385,0.214528,0.546003,0.106912,0.207535,0.747423,0.283013,0.17144,0.236468,0.0417384,0.280244,0.288749,0.164035,0.1168,0.0253961,0.112879,0.138362,0.1674,0.205022,0.304414,0.0775871,0.1646,0.530976,0.208894,0.916686,0.435374,0.190081,0.25636,0.392755,0.366993,0.117225,0.12921,0.107541,0.688004,0.136306,0.362226,0.565792,0.158567,0.119065,0.551931,0.0810658,0.268889,0.0751905,0.0620796,0.619849,0.102432,0.436925,0.234633,0.150144,0.235575,0.111506,0.209512,0.415762,0.167545,0.1033,0.238509,0.156356,0.450242,0.322099,0.0857464,0.282499,0.101873,0.121306,0.246526,0.203595,0.356991,0.227948,0.116879,0.128341,0.463619,0.168391,0.0458338,0.320047,0.397073,0.437057,0.221207,0.236405,0.358,0.621995,0.318595,0.140173,0.390753,0.312917,0.0842616,0.326484,0.15977,0.201434,0.134947,0.304849,0.0565162,0.212636,0.325012,0.353123,0.0908811,0.291345,0.453507,0.491263,0.547467,0.255995,0.184894,0.609179,0.244347,0.243363,0.0848007,0.361244,0.207462,0.51104,0.487422,0.29768,0.217499,0.154075,0.225368,0.244195,0.0586175,0.348776,0.198885,0.871901,0.347052,0.0865271,0.1797,0.379465,0.327304,0.217315,0.498434,0.132491,0.48467,0.367752,0.436987,0.0244296,0.12497,0.392559,0.0821811,0.71056,0.0433289,0.0984834,0.284421,0.71736,0.658832,0.1643,0.704995,0.458949,0.279105,0.0124088,0.659829,0.726427,0.164056,0.401507,0.692805,0.648881,0.703424,0.673541,0.330529,0.0969255,0.147508,0.182777,0.684866,0.790371,0.221836,0.39645,0.0972319,0.218947,0.111726,0.451787,0.0940476,0.389205,0.315577,0.542303,0.226936,0.558605,0.192833,0.00893069,0.341975,0.425103,0.547149,0.592518,0.448065,0.615729,0.771117,0.154752,0.74852,0.478352,0.143053,0.32181,0.37458,0.502019,0.337191,0.407631,0.434172,0.797881,0.515378,0.0978461,0.154175,0.779967,0.692633,0.220533,0.45244,0.411785,0.40673,0.415502,0.565657,0.499305,0.371455,0.000601199,0.676266,0.327011,0.050034,0.710278,0.210121,0.585578,0.272487,0.341296,0.12574,0.258349,0.541728,0.854621,0.0597394,0.373172,0.181869,0.470463,0.0764048,0.125952,0.816529,0.596462,0.917146,0.619962,0.072382,0.316667,0.514569,0.32842,0.536712,0.443364,0.358039,0.715255,0.765316,0.0937735,0.32901,0.41419,0.409987,0.294507,0.266548,0.346938,0.40211,0.183851,0.223035,0.783193,0.362009,0.611179,0.297782,0.250792,0.126341,0.0919405,0.265466,0.685486,0.651111,0.466416,0.099702,0.525367,0.667,0.748565,0.0819628,0.528332,0.0337416,0.573415,0.474724,0.0962487,0.574524,0.570287,0.0785671,0.107801,0.231021,0.146908,0.676249,0.760368,0.805909,0.440345,0.232264,0.400622,0.391073,0.766374,0.883398,0.575489,0.175413,0.540565,0.855535,0.775603,0.695855,0.525188,0.657348,0.52794,0.67786,0.780554,0.646027,0.0746134,0.402066,0.642069,0.680876,0.610982,0.256934,0.564763,0.0894143,0.415214,0.0762449,0.172412,0.0413582,0.415017,0.0769041,0.0873978,0.502902,0.385339,0.159832,0.162096,0.065336,0.390233,0.339879,0.438999,0.41967,0.197678,0.208523,0.34551,0.148216,0.101455,8.22946e-05,2.23441e-05,0.749185,0.369586,0.394729,0.441472,0.444932,0.622992,0.215866,0.436618,0.0952884,0.382758,0.264429,0.404954,0.0744027,0.204325,0.265849,0.370442,0.451398,0.533438,0.188364,0.279598,0.10421,0.143312,0.443868,0.150111,0.104304,0.514853,0.00297106,0.307495,0.124582,0.3382,0.124108,0.350305,0.0875262,0.147486,0.117583,0.103076,0.518238,0.40865,0.634608,0.324846,0.25829,0.215261,0.0300732,0.133496,0.433115,0.331422,0.440492,0.0149057,0.0390652,0.504119,0.0562494,0.371725,0.334024,0.500457,0.0565897,0.435107,0.26559,0.378345,0.380153,0.160696,0.502341,0.000826469,0.412407,0.42955,0.418893,0.300222,0.393729,0.487504,0.249956,0.447581,0.0293635,0.35808,0.406625,0.296254,0.400859,0.473667,0.327684,0.279523,0.499937,0.444635,0.356463,0.0765707,0.211724,0.0984714,0.215534,0.536787,0.113497,0.181464,0.40945,0.0291553,0.120636,0.121001,0.317719,0.172653,0.0924531,0.120918,0.593272,0.507382,0.425328,0.384398,0.462521,0.0873107,0.179489,0.214126,0.143317,0.0376847,0.14273,0.227254,0.147968,0.168955,0.274981,0.236422,0.0999117,0.0117456,0.196723,0.0836477,0.287028,0.413461,0.558766,0.545381,0.630108,0.299959,0.00611743,0.498355,0.406059,0.452427,0.56256,0.494497,0.366448,0.540845,0.511559,0.280842,0.335456,0.416632,0.0958507,0.00866241,0.0261321,0.600528,0.249647,0.43669,0.446356,0.248584,0.0148527,0.390152,0.537963,0.540199,0.488863,0.342785,0.447064,0.20487,0.23711,0.0228215,0.103672,0.209566,0.189123,0.588995,0.355645,0.332105,0.522124,0.158122,0.168501,0.220023,0.444217,0.0758735,0.329186,0.111136,0.148874,0.416144,0.648861 | |tfbs_overrepresentation=0.31043,0.131575,0.340408,0.107813,0.405466,0.547045,0.00491429,0.3551,0.0746874,0.0589549,0.0487584,0.448908,0.386236,0.269614,0.313114,0.138515,0.0498069,0.214302,0.119001,0.0298564,0.0865129,0.0442753,0.180923,0.20757,0.0943256,0.432377,0.0183096,0.199011,0.303793,0.204444,0.414424,0.246136,0.0415685,0.42006,0.148393,0.186108,0.754786,0.097401,0.258596,0.148774,0.210798,0.0564873,0.296737,0.377815,0.0370943,0.0825288,0.0864669,0.373342,0.240639,0.260266,0.323223,0.12188,0.156121,0.203677,0.403772,0.0873518,0.232986,0.427667,0.173296,0.229205,0.0673274,0.314503,0.0301481,0.168316,0.122724,0.113864,0.637,0.134457,0.189423,0.34721,0.670888,0.150845,0.195543,0.0361929,0.0173573,0.0394864,0.210826,0.0989984,0.0847661,0.0168408,0.209062,0.451469,0.0963703,0.247724,0.19247,0.0314,0.143736,0.421411,0.374735,0.140328,0.18877,0.111901,0.208559,0.107066,0.188008,0.248084,0.152286,0.322402,0.203166,0.00721151,0.0087069,0.529658,0.300234,0.0843602,0.0209057,0.0929061,0.149379,0.250565,0.0520139,0.00671571,0.375285,0.0775356,0.314757,0.0407805,0.220427,0.0769904,0.0468147,0.127234,0.294794,0.184794,0.346582,0.431052,0.00560677,0.188824,0.222747,0.365096,0.198942,0.034178,0.185876,0.286955,0.133529,0.165976,0.128445,0.0523619,0.269253,0.234279,0.144853,0.124383,0.0754012,0.00920461,0.052339,0.272785,0.412653,0.326814,0.879733,0.154324,0.215565,0.00123741,0.0885156,0.259543,0.0971196,0.30366,0.371915,0.0609284,0.0968299,0.253074,0.0145777,0.453904,0.116496,0.0769293,0.122873,0.0233936,0.251281,0.311437,0.0399061,0.246608,0.00426515,0.272323,0.0916381,0.582261,0.370083,0.292316,0.0601203,0.121785,0.17666,0.197691,0.297301,0.373889,0.077932,0.0811784,0.332099,0.262763,0.0627829,0.249166,0.16364,0.255634,0.376054,0.0912436,0.18278,0.0105468,0.232364,0.38363,0.263667,0.45461,0.243403,0.106408,0.173147,0.135052,0.150784,0.237426,0.196091,0.135293,0.0704675,0.135734,0.289872,0.0342294,0.0399491,5.07818e-05,0.102289,0.367697,0.103767,0.226759,0.260173,0.243859,0.58295,0.350868,0.341984,0.219863,0.140859,0.224003,0.300341,0.662833,0.0604577,0.336135,0.163924,0.270849,0.294471,0.189218,0.135411,0.134214,0.314603,0.0282869,0.0949171,0.169481,0.209657,0.204086,0.106746,0.509502,0.340697,0.431213,0.375058,0.264811,0.214704,0.183242,0.25057,0.290614,0.179951,0.241366,0.296754,0.252043,0.0626794,0.37985,0.380877,0.213951,0.214075,0.333636,0.232558,0.409093,0.154888,0.333486,0.138561,0.361831,0.340466,0.273737,0.0786852,0.179028,0.179229,0.201771,0.254117,0.16741,0.532883,0.141494,0.0324789,0.401674,0.190495,0.0865316,0.27777,0.337299,0.787698,0.69091,0.419083,0.575229,0.576263,0.340306,0.247108,0.408427,0.507115,0.74825,0.297951,0.5782,0.210893,0.608158,0.328631,0.606605,0.106354,0.892655,0.523169,0.553463,0.703138,0.330644,0.332445,0.880156,0.38355,0.283193,0.373708,0.723928,0.0308965,0.60842,0.437154,0.727324,0.668415,0.765804,0.100114,0.523159,0.511801,0.660738,0.356647,0.457495,0.00526804,0.530579,0.567514,0.453429,0.22357,0.445808,0.485483,0.634774,0.183544,0.586014,0.597024,0.192923,0.750148,0.595517,0.133385,0.554465,0.779369,0.741035,0.664607,0.596959,0.374773,0.374876,0.161592,0.0218745,0.400756,0.528337,0.131722,0.380732,0.62916,0.832986,0.16893,0.199533,0.804395,0.814166,0.821424,0.144423,0.537738,0.439461,0.340223,0.14951,0.162309,0.379192,0.62513,0.124197,0.332632,0.0375631,0.480726,0.281955,0.558038,0.163285,0.437649,0.218504,0.301843,0.102102,0.165804,0.454926,0.231956,0.61432,0.483874,0.557198,0.625165,0.0673817,0.549109,0.236455,0.0552985,0.176971,0.340787,0.144312,0.453428,0.248259,0.0154528,0.327395,0.134933,0.364981,0.20071,0.363777,0.505343,0.177621,0.614145,0.305806,0.307188,0.106996,0.667503,0.749333,0.762469,0.0315444,0.320625,0.10531,0.291113,0.503499,0.286678,0.215083,0.550031,0.555733,0.542255,0.257904,0.574375,0.57326,0.883094,0.224884,0.249835,0.00839056,0.508647,0.646316,0.0229709,0.70335,0.133613,0.090654,0.42833,0.412651,0.416603,0.253098,0.445827,0.738461,0.16695,0.619771,0.0420981,0.180871,0.300014,0.0557631,0.820036,0.33353,0.0268228,0.662621,0.460268,0.387548,0.195754,0.133496,0.823955,0.898787,0.630454,0.271742,0.633856,0.443447,0.122637,0.908283,0.901882,0.588029,0.15528,0.125135,0.392877,0.172615,0.129203,0.304883,0.445623,0.412193,0.39601,0.156956,0.39153,0.241931,0.54931,0.00503491,0.569749,0.270589,0.2868,0.231853,0.00712674,0.140425,0.103775,0.0412928,0.570618,0.535059,0.684902,0.105116,0.351863,0.247203,0.227166,0.197433,0.190714,0.333925,0.232295,0.0993709,0.00905448,0.264955,0.0421084,0.42369,0.394858,0.62923,0.112748,0.182834,0.148755,0.374546,0.00283178,0.438923,0.243744,0.398206,0.28169,0.0865639,0.108827,0.405826,0.342943,0.273081,0.363066,0.378645,0.35119,0.192669,0.208253,0.0260665,0.444023,0.232159,0.528175,0.0111948,0.359315,0.298797,0.425775,0.0687597,0.280435,0.10082,0.117938,0.421126,0.321571,0.176362,0.212715,0.334514,0.264825,0.19886,0.125399,0.539304,0.817594,0.291561,0.0337354,0.146629,0.426032,0.440859,0.177111,0.167984,0.337564,0.394053,0.123448,0.17256,0.126216,0.0947479,0.0787488,0.0883646,0.496336,0.353144,0.407665,0.11039,0.0750505,0.293511,0.0754745,0.0804304,0.439214,0.0896836,0.133679,0.361823,0.262768,0.235824,0.23812,0.506939,0.0654706,0.844302,0.305348,0.0883079,0.192275,0.123717,0.3044,0.494788,0.435034,0.388488,0.27954,0.326131,0.132368,0.00017154,0.168686,0.35711,0.180717,0.375467,0.246637,0.00655126,0.299453,0.347601,0.297851,0.195385,0.214528,0.546003,0.106912,0.207535,0.747423,0.283013,0.17144,0.236468,0.0417384,0.280244,0.288749,0.164035,0.1168,0.0253961,0.112879,0.138362,0.1674,0.205022,0.304414,0.0775871,0.1646,0.530976,0.208894,0.916686,0.435374,0.190081,0.25636,0.392755,0.366993,0.117225,0.12921,0.107541,0.688004,0.136306,0.362226,0.565792,0.158567,0.119065,0.551931,0.0810658,0.268889,0.0751905,0.0620796,0.619849,0.102432,0.436925,0.234633,0.150144,0.235575,0.111506,0.209512,0.415762,0.167545,0.1033,0.238509,0.156356,0.450242,0.322099,0.0857464,0.282499,0.101873,0.121306,0.246526,0.203595,0.356991,0.227948,0.116879,0.128341,0.463619,0.168391,0.0458338,0.320047,0.397073,0.437057,0.221207,0.236405,0.358,0.621995,0.318595,0.140173,0.390753,0.312917,0.0842616,0.326484,0.15977,0.201434,0.134947,0.304849,0.0565162,0.212636,0.325012,0.353123,0.0908811,0.291345,0.453507,0.491263,0.547467,0.255995,0.184894,0.609179,0.244347,0.243363,0.0848007,0.361244,0.207462,0.51104,0.487422,0.29768,0.217499,0.154075,0.225368,0.244195,0.0586175,0.348776,0.198885,0.871901,0.347052,0.0865271,0.1797,0.379465,0.327304,0.217315,0.498434,0.132491,0.48467,0.367752,0.436987,0.0244296,0.12497,0.392559,0.0821811,0.71056,0.0433289,0.0984834,0.284421,0.71736,0.658832,0.1643,0.704995,0.458949,0.279105,0.0124088,0.659829,0.726427,0.164056,0.401507,0.692805,0.648881,0.703424,0.673541,0.330529,0.0969255,0.147508,0.182777,0.684866,0.790371,0.221836,0.39645,0.0972319,0.218947,0.111726,0.451787,0.0940476,0.389205,0.315577,0.542303,0.226936,0.558605,0.192833,0.00893069,0.341975,0.425103,0.547149,0.592518,0.448065,0.615729,0.771117,0.154752,0.74852,0.478352,0.143053,0.32181,0.37458,0.502019,0.337191,0.407631,0.434172,0.797881,0.515378,0.0978461,0.154175,0.779967,0.692633,0.220533,0.45244,0.411785,0.40673,0.415502,0.565657,0.499305,0.371455,0.000601199,0.676266,0.327011,0.050034,0.710278,0.210121,0.585578,0.272487,0.341296,0.12574,0.258349,0.541728,0.854621,0.0597394,0.373172,0.181869,0.470463,0.0764048,0.125952,0.816529,0.596462,0.917146,0.619962,0.072382,0.316667,0.514569,0.32842,0.536712,0.443364,0.358039,0.715255,0.765316,0.0937735,0.32901,0.41419,0.409987,0.294507,0.266548,0.346938,0.40211,0.183851,0.223035,0.783193,0.362009,0.611179,0.297782,0.250792,0.126341,0.0919405,0.265466,0.685486,0.651111,0.466416,0.099702,0.525367,0.667,0.748565,0.0819628,0.528332,0.0337416,0.573415,0.474724,0.0962487,0.574524,0.570287,0.0785671,0.107801,0.231021,0.146908,0.676249,0.760368,0.805909,0.440345,0.232264,0.400622,0.391073,0.766374,0.883398,0.575489,0.175413,0.540565,0.855535,0.775603,0.695855,0.525188,0.657348,0.52794,0.67786,0.780554,0.646027,0.0746134,0.402066,0.642069,0.680876,0.610982,0.256934,0.564763,0.0894143,0.415214,0.0762449,0.172412,0.0413582,0.415017,0.0769041,0.0873978,0.502902,0.385339,0.159832,0.162096,0.065336,0.390233,0.339879,0.438999,0.41967,0.197678,0.208523,0.34551,0.148216,0.101455,8.22946e-05,2.23441e-05,0.749185,0.369586,0.394729,0.441472,0.444932,0.622992,0.215866,0.436618,0.0952884,0.382758,0.264429,0.404954,0.0744027,0.204325,0.265849,0.370442,0.451398,0.533438,0.188364,0.279598,0.10421,0.143312,0.443868,0.150111,0.104304,0.514853,0.00297106,0.307495,0.124582,0.3382,0.124108,0.350305,0.0875262,0.147486,0.117583,0.103076,0.518238,0.40865,0.634608,0.324846,0.25829,0.215261,0.0300732,0.133496,0.433115,0.331422,0.440492,0.0149057,0.0390652,0.504119,0.0562494,0.371725,0.334024,0.500457,0.0565897,0.435107,0.26559,0.378345,0.380153,0.160696,0.502341,0.000826469,0.412407,0.42955,0.418893,0.300222,0.393729,0.487504,0.249956,0.447581,0.0293635,0.35808,0.406625,0.296254,0.400859,0.473667,0.327684,0.279523,0.499937,0.444635,0.356463,0.0765707,0.211724,0.0984714,0.215534,0.536787,0.113497,0.181464,0.40945,0.0291553,0.120636,0.121001,0.317719,0.172653,0.0924531,0.120918,0.593272,0.507382,0.425328,0.384398,0.462521,0.0873107,0.179489,0.214126,0.143317,0.0376847,0.14273,0.227254,0.147968,0.168955,0.274981,0.236422,0.0999117,0.0117456,0.196723,0.0836477,0.287028,0.413461,0.558766,0.545381,0.630108,0.299959,0.00611743,0.498355,0.406059,0.452427,0.56256,0.494497,0.366448,0.540845,0.511559,0.280842,0.335456,0.416632,0.0958507,0.00866241,0.0261321,0.600528,0.249647,0.43669,0.446356,0.248584,0.0148527,0.390152,0.537963,0.540199,0.488863,0.342785,0.447064,0.20487,0.23711,0.0228215,0.103672,0.209566,0.189123,0.588995,0.355645,0.332105,0.522124,0.158122,0.168501,0.220023,0.444217,0.0758735,0.329186,0.111136,0.148874,0.416144,0.648861 | ||
|tfbs_overrepresentation_for_novel_motifs=1.01633,0.75236,0.384703,0.529489,2.46184,0.52784,0.604235,0.643217,0.637583,0.200685,0.497563,0.647852,0.541517,0.592674,0.341795,0.956905,0.827563,0.28906,0.569568,0.32524,0.384762,0.23059,0.520063,0.338096,0.430372,0.670692,0.957451,0.517892,0.346214,0.459534,1.1974,0.864517,0.714156,0.186138,0.8321,0.232776,0.825031,0.529001,0.282922,1.7673,0.307642,0.459366,0.254304,0.340293,0.494995,0.415364,0.60533,0.486696,0.237549,0.346342,0.684981,0.617179,0.117127,0.941629,1.09491,0.595623,0.350547,0.562713,0.459282,0.561701,0.905643,0.60771,0.638689,0.799729,0.625758,0.76514,1.18348,1.55228,0.854088,1.38987,1.13397,0.232216,0.369103,1.0929,1.6127,0.168304,0.473656,0.782748,0.850825,0.424224,0.200147,0.798651,0.625403,0.649554,1.04131,0.567403,0.662518,0.448771,0.711163,1.65172,1.27705,1.01423,0.881388,0.73028,1.62992,0.759662,0.194299,0.924148,0.715799,2.59259,0.28424,0.875714,0.918549,0.831244,0.753567,0.493026,0.815341,0.589207,1.09919,1.57162,0.395884,0.915771,0.379203,1.2644,1.22894,0.304323,1.00084,0.474472,0.762789,0.26701,1.0846,0.708722,0.525076,0.636741,1.33983,0.783512,0.597853,0.886402,1.12733,0.27799,1.01492,0.47854,1.14174,1.53117,1.28996,0.140417,0.469685,0.518459,1.24743,2.10682,1.70417,1.21002,0.59959,0.920609,0.755332,0.554217,0.738579,1.94751,0.456039,0.722945,0.703388,0.887646,1.0153,1.16378,1.47633,1.42052,0.694887,0.329354,1.09986,1.03728,1.2088,0.996724,0.850033,0.404861,0.7715,0.624608,0.695791,0.602897,0.377843 | |||
}} | }} |
Revision as of 14:41, 26 November 2012
Full id: C1115_CD4_CD34_CD8_CD19_Basophils_Peripheral_Dendritic
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
CHD2#1106 | 5 | 7.3885877386549 | 0.000149868960082067 | 0.00193141218188685 |
E2F1#1869 | 5 | 3.50527801062809 | 0.00509055358791505 | 0.0236837280010807 |
E2F4#1874 | 3 | 5.42916870655047 | 0.0135067508217614 | 0.0477032075030923 |
EGR1#1958 | 5 | 3.56298506772153 | 0.00472235121105893 | 0.0222552068106937 |
ELF1#1997 | 5 | 3.04149854200538 | 0.00971956226937075 | 0.0365565169926106 |
EP300#2033 | 4 | 3.87082384355611 | 0.0114256758668448 | 0.041859408631473 |
FOS#2353 | 4 | 5.14168874793966 | 0.00404209586567825 | 0.0193479284163147 |
GTF2B#2959 | 4 | 18.2536171053281 | 3.11241110089347e-05 | 0.0006292239701243 |
GTF2F1#2962 | 3 | 5.45985466146756 | 0.013298821684157 | 0.0470213161985129 |
HEY1#23462 | 6 | 3.46295232266204 | 0.00126789009587212 | 0.00850354313657776 |
IRF1#3659 | 4 | 4.36409357346509 | 0.0073934558242782 | 0.0305493405931236 |
NANOG#79923 | 3 | 12.5334764918626 | 0.00126105218950347 | 0.00846747007969353 |
NFKB1#4790 | 5 | 3.9200453029956 | 0.00303658142448461 | 0.0161155306363 |
NFYA#4800 | 6 | 15.793354885569 | 1.7032585757508e-07 | 9.38220582240704e-06 |
NFYB#4801 | 6 | 14.3655370744598 | 2.99325254948281e-07 | 1.50947514734638e-05 |
PAX5#5079 | 4 | 3.81118030353019 | 0.0120826168155519 | 0.0438204124596112 |
POLR2A#5430 | 7 | 2.14745317655807 | 0.00474763644761028 | 0.0223219917594188 |
REST#5978 | 5 | 6.89287765437716 | 0.000209438858484651 | 0.00243825492601477 |
RFX5#5993 | 6 | 10.3267807090244 | 2.12421369818918e-06 | 7.73538195345816e-05 |
SP1#6667 | 6 | 4.88432689554934 | 0.000173636112229091 | 0.00211282557673238 |
SP2#6668 | 4 | 14.9448745679112 | 6.81071539656055e-05 | 0.00108762126192873 |
TAF1#6872 | 6 | 2.86546824492454 | 0.00372833020747146 | 0.0185818696510671 |
TBP#6908 | 6 | 3.17723201751119 | 0.00207411205185266 | 0.0120149863322114 |
TCF7L2#6934 | 4 | 6.15438660750705 | 0.00206467614813804 | 0.0119689560521419 |
TRIM28#10155 | 3 | 7.96736787654108 | 0.00462234126315646 | 0.0218311716719937 |
YY1#7528 | 5 | 3.50797910703847 | 0.00507257067280898 | 0.0236095284325281 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.