NonredundantMotifs:34: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;73.016397;93.5101009999999;20.999693;64.699776!2;146.51906;17.547087;55.544849;32.614971!3;52.666958;51.997261;108.529854;39.031894!4;109.240729;9.205907;5.558978;128.220353!5;2.713685;0;249.512282;0!6;1.7142;0;250.511767;0!7;251.308668;0;0.917299;0!8;249.568094;0;2.657873;0!9;249.673431;0.84565;1.706886;0!10;157.183663;50.194764;10.824947;34.022593!11;72.111846;44.741669;23.799103;111.573349!12;34.464015;71.735108;29.634182;116.392662 | |PWM=P0;A;C;G;T!1;73.016397;93.5101009999999;20.999693;64.699776!2;146.51906;17.547087;55.544849;32.614971!3;52.666958;51.997261;108.529854;39.031894!4;109.240729;9.205907;5.558978;128.220353!5;2.713685;0;249.512282;0!6;1.7142;0;250.511767;0!7;251.308668;0;0.917299;0!8;249.568094;0;2.657873;0!9;249.673431;0.84565;1.706886;0!10;157.183663;50.194764;10.824947;34.022593!11;72.111846;44.741669;23.799103;111.573349!12;34.464015;71.735108;29.634182;116.392662 | ||
|entrez_gene_id= | |entrez_gene_id=NFATC1 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:IKZF2.p2~NFATC1..3.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0152.1;NFATC2 /SWISSREGULON:IKZF2.p2~NFATC1..3.p2 /HOMER:NFATC1_motifB;Jurkat-NFATC1-ChIP-Seq~NFATC1_motifA;Jurkat-NFATC1-ChIP-Seq /HOCOMOCO:NFAC2_f1~NFAC3_f1~NFAC4_f1~NFAC1_si~NFAT5_f1~NFAC1_do | ||
|name=known34 | |name=known34 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=NFATC1..3.p2 | |representative_motif_id=NFATC1..3.p2 | ||
|representative_motif_name= | |representative_motif_name=NFATC1 | ||
|score=0.1729565267707871 | |score=0.1729565267707871 | ||
|uniprot_entry_name= | |uniprot_entry_name=NFATC1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known34
- db :SWISSREGULON
- Id :NFATC1..3.p2
- name :NFATC1
- score :0.1729565267707871
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
