FFCP PHASE1:Hg19::chr2:131594446..131594472,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=50649 | |EntrezGene=50649 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=684 | |HGNC=684 | ||
|TSSclassifier=S | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_ENST00000526381_5end | |association_with_transcript=-16bp_to_ENST00000526381_5end |
Revision as of 00:45, 9 July 2013
Short description: | p3@ARHGEF4 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ARHGEF4_5end |
Coexpression cluster: | C4126_salivary_astrocytoma_spinal_hippocampus_medulla_thalamus_amygdala |
Association with transcript: | -16bp_to_ENST00000526381_5end |
EntrezGene: | ARHGEF4 |
HGNC: | 684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@ARHGEF4 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.42e-15 | 42 |
epithelial cell | 3.41e-14 | 253 |
endodermal cell | 6.62e-12 | 58 |
epithelial cell of alimentary canal | 3.77e-10 | 20 |
respiratory epithelial cell | 1.21e-08 | 13 |
Showing 1 to 5 of 5 entries
Ontology term | p-value | n |
---|---|---|
neural tube | 2.61e-36 | 56 |
neural rod | 2.61e-36 | 56 |
future spinal cord | 2.61e-36 | 56 |
neural keel | 2.61e-36 | 56 |
regional part of nervous system | 8.85e-33 | 53 |
regional part of brain | 8.85e-33 | 53 |
central nervous system | 3.04e-32 | 81 |
brain | 7.22e-31 | 68 |
future brain | 7.22e-31 | 68 |
nervous system | 3.47e-30 | 89 |
Showing 1 to 10 of 54 entries
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.00e-11 | 106 |
squamous cell carcinoma | 2.11e-08 | 14 |
cell type cancer | 3.29e-07 | 143 |
Showing 1 to 3 of 3 entries
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.