CL:0000223

Name:	endodermal cell
Namespace:	FANTOM
Definition:	"A cell of the inner of the three germ layers of the embryo." [MESH:A.16.254.425.407]
Xrefs:	Expandlinks: FMA:72555
Synonyms:	"endoderm cell" EXACT []

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0002321(embryonic cell)
part_of:	UBERON:0000925(endoderm)

Children

develops from:	CL:0000083 (epithelial cell of pancreas),CL:0002076 (endo-epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000223 (endodermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
3.0e-43	FFCP PHASE2:Mm9::chr17:71096407..71096414,+	p@chr17:71096407..71096414, +
3.0e-43	FFCP PHASE1:Mm9::chr17:71096407..71096414,+	p@chr17:71096407..71096414, +
6.2e-43	FFCP PHASE2:Mm9::chr2:167904248..167904260,+	p@chr2:167904248..167904260, +
6.2e-43	FFCP PHASE1:Mm9::chr2:167904248..167904260,+	p@chr2:167904248..167904260, +
2.8e-40	FFCP PHASE2:Hg19::chr3:111451297..111451320,+	p3@PLCXD2
2.8e-40	FFCP PHASE1:Hg19::chr3:111451297..111451320,+	p3@PLCXD2
2.34e-39	FFCP PHASE2:Mm9::chr17:57201412..57201418,-	p@chr17:57201412..57201418, -
2.34e-39	FFCP PHASE1:Mm9::chr17:57201412..57201418,-	p@chr17:57201412..57201418, -
4.97e-39	FFCP PHASE1:Mm9::chr4:155434167..155434177,+	p@chr4:155434167..155434177, +
4.97e-39	FFCP PHASE2:Mm9::chr17:71096223..71096230,-	p@chr17:71096223..71096230, -
4.97e-39	FFCP PHASE2:Mm9::chr2:173090551..173090558,+	p@chr2:173090551..173090558, +
4.97e-39	FFCP PHASE1:Mm9::chr17:71096223..71096230,-	p@chr17:71096223..71096230, -
4.97e-39	FFCP PHASE2:Mm9::chr4:155434167..155434177,+	p@chr4:155434167..155434177, +
4.97e-39	FFCP PHASE1:Mm9::chr2:173090551..173090558,+	p@chr2:173090551..173090558, +
8.64e-39	FFCP PHASE2:Mm9::chr3:58176362..58176392,-	p@chr3:58176362..58176392, -
8.64e-39	FFCP PHASE1:Mm9::chr3:58176362..58176392,-	p@chr3:58176362..58176392, -
1.34e-38	FFCP PHASE1:Mm9::chr15:77670701..77670706,+	p@chr15:77670701..77670706, +
1.34e-38	FFCP PHASE2:Mm9::chr15:77670701..77670706,+	p@chr15:77670701..77670706, +
3.34e-38	FFCP PHASE2:Mm9::chr7:123602470..123602475,-	p@chr7:123602470..123602475, -
3.34e-38	FFCP PHASE1:Mm9::chr7:123602470..123602475,-	p@chr7:123602470..123602475, -
2.63e-37	FFCP PHASE2:Mm9::chr7:29710433..29710437,-	p@chr7:29710433..29710437, -
2.63e-37	FFCP PHASE1:Mm9::chr7:29710433..29710437,-	p@chr7:29710433..29710437, -
2.86e-37	FFCP PHASE1:Mm9::chr18:36576247..36576252,-	p@chr18:36576247..36576252, -
2.86e-37	FFCP PHASE2:Mm9::chr18:36576247..36576252,-	p@chr18:36576247..36576252, -
2.22e-36	FFCP PHASE1:Mm9::chr10:19251573..19251584,+	p@chr10:19251573..19251584, +
2.22e-36	FFCP PHASE2:Mm9::chr10:19251573..19251584,+	p@chr10:19251573..19251584, +
1.03e-35	FFCP PHASE1:Mm9::chr19:5846964..5846989,+	p@chr19:5846964..5846989, +
1.03e-35	FFCP PHASE2:Mm9::chr19:5846964..5846989,+	p@chr19:5846964..5846989, +
3.74e-35	FFCP PHASE1:Mm9::chr1:90912298..90912303,+	p3@1700067G17Rik
3.74e-35	FFCP PHASE2:Mm9::chr1:90912298..90912303,+	p3@1700067G17Rik
4.93e-35	FFCP PHASE1:Mm9::chr5:135465906..135465912,+	p@chr5:135465906..135465912, +
4.93e-35	FFCP PHASE2:Mm9::chr5:135465906..135465912,+	p@chr5:135465906..135465912, +
5.46e-35	FFCP PHASE2:Mm9::chr3:95898220..95898255,-	p@chr3:95898220..95898255, -
5.46e-35	FFCP PHASE1:Mm9::chr3:95898220..95898255,-	p@chr3:95898220..95898255, -
7.88e-35	FFCP PHASE1:Mm9::chr8:122335239..122335244,+	p@chr8:122335239..122335244, +
7.88e-35	FFCP PHASE2:Mm9::chr8:122335239..122335244,+	p@chr8:122335239..122335244, +
9.26e-35	FFCP PHASE1:Mm9::chr5:135442713..135442733,+	p@chr5:135442713..135442733, +
9.26e-35	FFCP PHASE2:Mm9::chr5:135442713..135442733,+	p@chr5:135442713..135442733, +
2.85e-34	FFCP PHASE1:Hg19::chr3:189653493..189653498,-	p@chr3:189653493..189653498, -
2.85e-34	FFCP PHASE2:Hg19::chr3:189653493..189653498,-	p@chr3:189653493..189653498, -
4.1e-34	FFCP PHASE2:Hg19::chr15:83953694..83953708,-	p4@BNC1
4.1e-34	FFCP PHASE1:Hg19::chr15:83953694..83953708,-	p4@BNC1
4.53e-34	FFCP PHASE1:Hg19::chr19:45281245..45281260,+	p1@CU688574
4.53e-34	FFCP PHASE2:Hg19::chr19:45281245..45281260,+	p1@CU688574
8.1e-34	FFCP PHASE1:Hg19::chr1:200864071..200864088,+	p3@C1orf106
8.1e-34	FFCP PHASE2:Hg19::chr1:200864071..200864088,+	p3@C1orf106
1.71e-33	FFCP PHASE2:Hg19::chr3:189586378..189586390,+	p@chr3:189586378..189586390, +
1.71e-33	FFCP PHASE1:Hg19::chr3:189586378..189586390,+	p@chr3:189586378..189586390, +
2.16e-33	FFCP PHASE2:Hg19::chr3:111451321..111451372,+	p3@PHLDB2
2.16e-33	FFCP PHASE1:Hg19::chr3:111451321..111451372,+	p3@PHLDB2
3.72e-33	FFCP PHASE2:Mm9::chr17:85278509..85278533,-	p@chr17:85278509..85278533, -
3.72e-33	FFCP PHASE1:Mm9::chr17:85278509..85278533,-	p@chr17:85278509..85278533, -
5.83e-33	FFCP PHASE2:Hg19::chr3:189027876..189027892,+	p1@TPRG1
5.83e-33	FFCP PHASE1:Hg19::chr3:189027876..189027892,+	p1@TPRG1
6.25e-33	FFCP PHASE2:Mm9::chr7:117307829..117307835,+	p@chr7:117307829..117307835, +
6.25e-33	FFCP PHASE1:Mm9::chr7:117307829..117307835,+	p@chr7:117307829..117307835, +
7.77e-33	FFCP PHASE1:Hg19::chr3:69590414..69590433,-	p14@FRMD4B
7.77e-33	FFCP PHASE2:Hg19::chr3:69590414..69590433,-	p14@FRMD4B
1.81e-32	FFCP PHASE2:Hg19::chr2:131669765..131669776,+	p@chr2:131669765..131669776, +
1.81e-32	FFCP PHASE1:Hg19::chr2:131669765..131669776,+	p@chr2:131669765..131669776, +
1.94e-32	FFCP PHASE2:Hg19::chr8:144815895..144815912,-	p4@FAM83H
1.94e-32	FFCP PHASE1:Hg19::chr8:144815895..144815912,-	p4@FAM83H
2.17e-32	FFCP PHASE2:Hg19::chr17:39942208..39942219,-	p7@JUP
2.17e-32	FFCP PHASE1:Hg19::chr17:39942208..39942219,-	p7@JUP
2.71e-32	FFCP PHASE2:Hg19::chr14:65409484..65409495,-	p2@GPX2
2.71e-32	FFCP PHASE1:Hg19::chr14:65409484..65409495,-	p2@GPX2
5.12e-32	FFCP PHASE1:Mm9::chr19:23215457..23215463,-	p@chr19:23215457..23215463, -
5.12e-32	FFCP PHASE2:Mm9::chr19:23215457..23215463,-	p@chr19:23215457..23215463, -
6.59e-32	FFCP PHASE2:Mm9::chr13:49066571..49066574,-	p@chr13:49066571..49066574, -
6.59e-32	FFCP PHASE1:Mm9::chr13:49066571..49066574,-	p@chr13:49066571..49066574, -
9.16e-32	FFCP PHASE1:Hg19::chr11:72432903..72432945,-	p7@ARAP1
9.16e-32	FFCP PHASE2:Hg19::chr11:72432903..72432945,-	p7@ARAP1
9.52e-32	FFCP PHASE1:Hg19::chr1:153534037..153534052,-	p@chr1:153534037..153534052, -
9.52e-32	FFCP PHASE2:Hg19::chr1:153534037..153534052,-	p@chr1:153534037..153534052, -
1.01e-31	FFCP PHASE1:Hg19::chr20:52369856..52369863,-	p@chr20:52369856..52369863, -
1.01e-31	FFCP PHASE2:Hg19::chr20:52369856..52369863,-	p@chr20:52369856..52369863, -
1.17e-31	FFCP PHASE1:Mm9::chr1:37598054..37598057,+	p@chr1:37598054..37598057, +
1.17e-31	FFCP PHASE2:Mm9::chr1:37598054..37598057,+	p@chr1:37598054..37598057, +
1.41e-31	FFCP PHASE2:Hg19::chr6:56484092..56484104,-	p63@DST
1.41e-31	FFCP PHASE1:Hg19::chr6:56484092..56484104,-	p63@DST
1.65e-31	FFCP PHASE1:Mm9::chr17:46693370..46693378,+	p@chr17:46693370..46693378, +
1.65e-31	FFCP PHASE2:Mm9::chr17:46693370..46693378,+	p@chr17:46693370..46693378, +
3.79e-31	FFCP PHASE1:Hg19::chr20:6104062..6104096,-	p3@FERMT1
3.79e-31	FFCP PHASE2:Hg19::chr20:6104062..6104096,-	p3@FERMT1
3.94e-31	FFCP PHASE2:Hg19::chr14:65409502..65409511,-	p3@GPX2
3.94e-31	FFCP PHASE1:Hg19::chr14:65409502..65409511,-	p3@GPX2
3.97e-31	FFCP PHASE2:Hg19::chr9:139379185..139379201,-	p@chr9:139379185..139379201, -
3.97e-31	FFCP PHASE1:Hg19::chr9:139379185..139379201,-	p@chr9:139379185..139379201, -
7.78e-31	FFCP PHASE1:Hg19::chr20:6103574..6103587,-	p7@FERMT1
7.78e-31	FFCP PHASE2:Hg19::chr20:6103574..6103587,-	p7@FERMT1
8.79e-31	FFCP PHASE2:Mm9::chr7:135666964..135666972,-	p@chr7:135666964..135666972, -
8.79e-31	FFCP PHASE1:Mm9::chr7:135666964..135666972,-	p@chr7:135666964..135666972, -
9.9e-31	FFCP PHASE1:Hg19::chr6:56483497..56483514,-	p84@DST
9.9e-31	FFCP PHASE2:Hg19::chr6:56483497..56483514,-	p84@DST
1.0e-30	FFCP PHASE2:Mm9::chr4:128908952..128908957,+	p@chr4:128908952..128908957, +
1.0e-30	FFCP PHASE1:Mm9::chr4:128908952..128908957,+	p@chr4:128908952..128908957, +
1.2e-30	FFCP PHASE1:Mm9::chr8:64192378..64192389,+	p@chr8:64192378..64192389, +
1.2e-30	FFCP PHASE2:Mm9::chr8:64192378..64192389,+	p@chr8:64192378..64192389, +
1.91e-30	FFCP PHASE2:Hg19::chr14:51955524..51955550,+	p9@FRMD6
1.91e-30	FFCP PHASE1:Hg19::chr14:51955524..51955550,+	p9@FRMD6

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