FFCP PHASE1:Hg19::chr12:24102862..24102867,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6660|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11201|TSSclassifier=W|UniProt=P35711|association_with_transcript=-225bp_to_ENST00000309359,ENST00000381381,ENST00000451604,NM_006940,uc001rfw.2_5end|coexpression_cluster_id=C10|description=CAGE_peak_15_at_SOX5_5end|id=chr12:24102862..24102867,-|ontology_enrichment_celltype=CL:0000047!2.06e-14!8;CL:0000540!5.93e-09!6;CL:0000031!5.93e-09!6;CL:0000404!5.93e-09!6|ontology_enrichment_celltype_v019=CL:0000047;2.60e-11;2|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!5.73e-41!22;UBERON:0001893!4.80e-38!34;UBERON:0002780!2.66e-37!41;UBERON:0001890!2.66e-37!41;UBERON:0006240!2.66e-37!41;UBERON:0001017!5.87e-37!82;UBERON:0003080!2.80e-36!42;UBERON:0002791!6.95e-36!33;UBERON:0000956!1.13e-35!25;UBERON:0000203!1.13e-35!25;UBERON:0001950!1.57e-35!20;UBERON:0005743!7.50e-35!86;UBERON:0001869!1.85e-33!32;UBERON:0001049!2.65e-32!57;UBERON:0005068!2.65e-32!57;UBERON:0006241!2.65e-32!57;UBERON:0007135!2.65e-32!57;UBERON:0002020!2.20e-31!34;UBERON:0003528!2.20e-31!34;UBERON:0002616!5.56e-31!59;UBERON:0000073!9.43e-31!94;UBERON:0001016!9.43e-31!94;UBERON:0000955!4.25e-27!69;UBERON:0006238!4.25e-27!69;UBERON:0003056!3.76e-23!61;UBERON:0002346!2.08e-21!90;UBERON:0003075!7.73e-21!86;UBERON:0007284!7.73e-21!86;UBERON:0001871!9.31e-19!7;UBERON:0007023!5.73e-16!115;UBERON:0000924!5.26e-14!173;UBERON:0006601!5.26e-14!173;UBERON:0000033!1.96e-13!123;UBERON:0004121!2.06e-13!169;UBERON:0000200!6.80e-13!6;UBERON:0000153!1.73e-12!129;UBERON:0007811!1.73e-12!129;UBERON:0001872!5.89e-11!5;UBERON:0002771!2.71e-10!3;UBERON:0000025!5.74e-09!194;UBERON:0001954!2.36e-07!2;UBERON:0003022!2.36e-07!2;UBERON:0002421!2.36e-07!2;UBERON:0002600!2.36e-07!2;UBERON:0000064!4.77e-07!219;UBERON:0003127!5.15e-07!2;UBERON:0000483!8.91e-07!309|ontology_enrichment_uberon_v019=UBERON:0001950;8.15e-24;20!UBERON:0002619;9.09e-22;22!UBERON:0000956;2.76e-19;25!UBERON:0000203;2.76e-19;25!UBERON:0000922;3.16e-18;49!UBERON:0002791;1.04e-14;32!UBERON:0001869;1.91e-14;32!UBERON:0003528;1.46e-12;34!UBERON:0002020;1.46e-12;34!UBERON:0001871;2.44e-12;6!UBERON:0001893;5.58e-12;34!UBERON:0002702;3.70e-11;2!UBERON:0002780;2.38e-10;41!UBERON:0001890;2.38e-10;41!UBERON:0002114;5.73e-08;2!UBERON:0001870;7.26e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.40e-24,20;UBERON:0002619,1.04e-21,22;UBERON:0000956,3.10e-19,25;UBERON:0000203,3.10e-19,25;UBERON:0002791,3.37e-15,32;UBERON:0001869,3.37e-15,32;UBERON:0003528,2.43e-14,34;UBERON:0002020,2.43e-14,34;UBERON:0001893,2.43e-14,34;UBERON:0001871,2.66e-12,6;UBERON:0002780,5.63e-12,41;UBERON:0001890,5.63e-12,41;UBERON:0003080,5.63e-12,41;UBERON:0006240,5.63e-12,41;UBERON:0002702,4.52e-11,2;UBERON:0000073,2.44e-09,53;UBERON:0002616,2.44e-09,53;UBERON:0001049,7.51e-09,56;UBERON:0005068,7.51e-09,56;UBERON:0006241,7.51e-09,56;UBERON:0007135,7.51e-09,56;UBERON:0001017,1.48e-08,81;UBERON:0002346,3.83e-08,86;UBERON:0003056,3.84e-08,61;UBERON:0002114,5.93e-08,2;UBERON:0001870,8.29e-08,3;UBERON:0001016,1.06e-07,89;UBERON:0000955,3.24e-07,68;UBERON:0006238,3.24e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,3.90419561572865,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,1.20990716048664,4.28501866282686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.202210631562555,0,0,0.795229689809303,0.136203406111576,0.160753148465019,0,0,0,0,0.485996453264197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,1.001527445652,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48722917110803,0,0,0.157723490002507,0,0,0,0,0,0,0.41023272848151,4.28521883576921,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.253663240775627,6.56369770821863,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.263091094251396,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0,0.218559560503957,1.41095188908457,0,0.235676547101626,0,0,0,0,0,0.0644578879735772,0,0,0,0,1.46067277649303,0,0.143339583151451,0.157771562193185,0.0679914901909147,3.49080552272302,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p15@SOX5}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6660 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11201 | |||
|TSSclassifier=W | |||
|UniProt=P35711 | |||
|association_with_transcript=-225bp_to_ENST00000309359,ENST00000381381,ENST00000451604,NM_006940,uc001rfw.2_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_15_at_SOX5_5end | |||
|id=chr12:24102862..24102867,- | |||
|ontology_enrichment_celltype=CL:0000047!2.06e-14!8;CL:0000540!5.93e-09!6;CL:0000031!5.93e-09!6;CL:0000404!5.93e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.60e-11;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!5.73e-41!22;UBERON:0001893!4.80e-38!34;UBERON:0002780!2.66e-37!41;UBERON:0001890!2.66e-37!41;UBERON:0006240!2.66e-37!41;UBERON:0001017!5.87e-37!82;UBERON:0003080!2.80e-36!42;UBERON:0002791!6.95e-36!33;UBERON:0000956!1.13e-35!25;UBERON:0000203!1.13e-35!25;UBERON:0001950!1.57e-35!20;UBERON:0005743!7.50e-35!86;UBERON:0001869!1.85e-33!32;UBERON:0001049!2.65e-32!57;UBERON:0005068!2.65e-32!57;UBERON:0006241!2.65e-32!57;UBERON:0007135!2.65e-32!57;UBERON:0002020!2.20e-31!34;UBERON:0003528!2.20e-31!34;UBERON:0002616!5.56e-31!59;UBERON:0000073!9.43e-31!94;UBERON:0001016!9.43e-31!94;UBERON:0000955!4.25e-27!69;UBERON:0006238!4.25e-27!69;UBERON:0003056!3.76e-23!61;UBERON:0002346!2.08e-21!90;UBERON:0003075!7.73e-21!86;UBERON:0007284!7.73e-21!86;UBERON:0001871!9.31e-19!7;UBERON:0007023!5.73e-16!115;UBERON:0000924!5.26e-14!173;UBERON:0006601!5.26e-14!173;UBERON:0000033!1.96e-13!123;UBERON:0004121!2.06e-13!169;UBERON:0000200!6.80e-13!6;UBERON:0000153!1.73e-12!129;UBERON:0007811!1.73e-12!129;UBERON:0001872!5.89e-11!5;UBERON:0002771!2.71e-10!3;UBERON:0000025!5.74e-09!194;UBERON:0001954!2.36e-07!2;UBERON:0003022!2.36e-07!2;UBERON:0002421!2.36e-07!2;UBERON:0002600!2.36e-07!2;UBERON:0000064!4.77e-07!219;UBERON:0003127!5.15e-07!2;UBERON:0000483!8.91e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;8.15e-24;20!UBERON:0002619;9.09e-22;22!UBERON:0000956;2.76e-19;25!UBERON:0000203;2.76e-19;25!UBERON:0000922;3.16e-18;49!UBERON:0002791;1.04e-14;32!UBERON:0001869;1.91e-14;32!UBERON:0003528;1.46e-12;34!UBERON:0002020;1.46e-12;34!UBERON:0001871;2.44e-12;6!UBERON:0001893;5.58e-12;34!UBERON:0002702;3.70e-11;2!UBERON:0002780;2.38e-10;41!UBERON:0001890;2.38e-10;41!UBERON:0002114;5.73e-08;2!UBERON:0001870;7.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.40e-24,20;UBERON:0002619,1.04e-21,22;UBERON:0000956,3.10e-19,25;UBERON:0000203,3.10e-19,25;UBERON:0002791,3.37e-15,32;UBERON:0001869,3.37e-15,32;UBERON:0003528,2.43e-14,34;UBERON:0002020,2.43e-14,34;UBERON:0001893,2.43e-14,34;UBERON:0001871,2.66e-12,6;UBERON:0002780,5.63e-12,41;UBERON:0001890,5.63e-12,41;UBERON:0003080,5.63e-12,41;UBERON:0006240,5.63e-12,41;UBERON:0002702,4.52e-11,2;UBERON:0000073,2.44e-09,53;UBERON:0002616,2.44e-09,53;UBERON:0001049,7.51e-09,56;UBERON:0005068,7.51e-09,56;UBERON:0006241,7.51e-09,56;UBERON:0007135,7.51e-09,56;UBERON:0001017,1.48e-08,81;UBERON:0002346,3.83e-08,86;UBERON:0003056,3.84e-08,61;UBERON:0002114,5.93e-08,2;UBERON:0001870,8.29e-08,3;UBERON:0001016,1.06e-07,89;UBERON:0000955,3.24e-07,68;UBERON:0006238,3.24e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,3.90419561572865,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,1.20990716048664,4.28501866282686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.202210631562555,0,0,0.795229689809303,0.136203406111576,0.160753148465019,0,0,0,0,0.485996453264197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,1.001527445652,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48722917110803,0,0,0.157723490002507,0,0,0,0,0,0,0.41023272848151,4.28521883576921,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.620060389503552,0.253663240775627,6.56369770821863,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.263091094251396,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0,0.218559560503957,1.41095188908457,0,0.235676547101626,0,0,0,0,0,0.0644578879735772,0,0,0,0,1.46067277649303,0,0.143339583151451,0.157771562193185,0.0679914901909147,3.49080552272302,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p15@SOX5 | |||
}} |
Revision as of 22:11, 10 September 2013
Short description: | p15@SOX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_SOX5_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -225bp_to_ENST00000309359, ENST00000381381, ENST00000451604, NM_006940, uc001rfw.2_5end |
EntrezGene: | SOX5 |
HGNC: | 11201 |
UniProt: | P35711 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 9.40e-24 | 20 |
regional part of cerebral cortex | 1.04e-21 | 22 |
cerebral cortex | 3.10e-19 | 25 |
pallium | 3.10e-19 | 25 |
regional part of telencephalon | 3.37e-15 | 32 |
cerebral hemisphere | 3.37e-15 | 32 |
brain grey matter | 2.43e-14 | 34 |
gray matter | 2.43e-14 | 34 |
telencephalon | 2.43e-14 | 34 |
temporal lobe | 2.66e-12 | 6 |
regional part of forebrain | 5.63e-12 | 41 |
forebrain | 5.63e-12 | 41 |
anterior neural tube | 5.63e-12 | 41 |
future forebrain | 5.63e-12 | 41 |
middle frontal gyrus | 4.52e-11 | 2 |
regional part of nervous system | 2.44e-09 | 53 |
regional part of brain | 2.44e-09 | 53 |
neural tube | 7.51e-09 | 56 |
neural rod | 7.51e-09 | 56 |
future spinal cord | 7.51e-09 | 56 |
neural keel | 7.51e-09 | 56 |
central nervous system | 1.48e-08 | 81 |
neurectoderm | 3.83e-08 | 86 |
pre-chordal neural plate | 3.84e-08 | 61 |
duodenum | 5.93e-08 | 2 |
frontal cortex | 8.29e-08 | 3 |
nervous system | 1.06e-07 | 89 |
brain | 3.24e-07 | 68 |
future brain | 3.24e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.