FFCP PHASE1:Hg19::chr18:5540484..5540494,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23136|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3380|TSSclassifier=S|UniProt=Q9Y2J2,F5GX05|association_with_transcript=60bp_to_ENST00000342933,ENST00000400111,ENST00000544123,uc010wzh.1_5end|description=CAGE_peak_20_at_EPB41L3_5end|id=chr18:5540484..5540494,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;1.91e-15;2!CL:0000333;5.86e-07;5|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!9.30e-52!57;UBERON:0005068!9.30e-52!57;UBERON:0006241!9.30e-52!57;UBERON:0007135!9.30e-52!57;UBERON:0001017!4.93e-46!82;UBERON:0005743!1.68e-43!86;UBERON:0002619!2.47e-43!22;UBERON:0002616!3.46e-43!59;UBERON:0001950!1.20e-42!20;UBERON:0000073!3.90e-41!94;UBERON:0001016!3.90e-41!94;UBERON:0003075!5.12e-41!86;UBERON:0007284!5.12e-41!86;UBERON:0002346!8.42e-39!90;UBERON:0000955!6.25e-38!69;UBERON:0006238!6.25e-38!69;UBERON:0000956!8.89e-38!25;UBERON:0000203!8.89e-38!25;UBERON:0002020!1.89e-37!34;UBERON:0003528!1.89e-37!34;UBERON:0001893!3.87e-37!34;UBERON:0001869!6.04e-36!32;UBERON:0002791!1.76e-34!33;UBERON:0002780!2.54e-33!41;UBERON:0001890!2.54e-33!41;UBERON:0006240!2.54e-33!41;UBERON:0003080!2.08e-32!42;UBERON:0001871!1.46e-26!7;UBERON:0007023!1.51e-26!115;UBERON:0004121!6.85e-23!169;UBERON:0003056!9.87e-23!61;UBERON:0000924!3.87e-22!173;UBERON:0006601!3.87e-22!173;UBERON:0000033!5.81e-21!123;UBERON:0003076!7.95e-21!15;UBERON:0003057!7.95e-21!15;UBERON:0000153!1.29e-19!129;UBERON:0007811!1.29e-19!129;UBERON:0004733!4.71e-17!12;UBERON:0002028!4.71e-17!12;UBERON:0007277!4.71e-17!12;UBERON:0004732!1.25e-15!13;UBERON:0002298!2.33e-15!8;UBERON:0000200!4.37e-14!6;UBERON:0000025!2.33e-13!194;UBERON:0000988!1.01e-11!3;UBERON:0002021!1.90e-11!5;UBERON:0002771!7.57e-11!3;UBERON:0000349!9.19e-11!5;UBERON:0001896!9.56e-11!3;UBERON:0005290!9.56e-11!3;UBERON:0010096!9.56e-11!3;UBERON:0004111!7.89e-10!241;UBERON:0000477!1.18e-09!286;UBERON:0002680!1.92e-09!9;UBERON:0001895!1.92e-09!9;UBERON:0010092!1.92e-09!9;UBERON:0000119!2.13e-09!312;UBERON:0000064!4.35e-09!219;UBERON:0000483!6.53e-09!309;UBERON:0002148!2.74e-08!2;UBERON:0009662!2.74e-08!2;UBERON:0001876!1.01e-07!2;UBERON:0000481!2.22e-07!347;UBERON:0002360!2.54e-07!2;UBERON:0000094!2.54e-07!2;UBERON:0007645!2.54e-07!2;UBERON:0000475!3.95e-07!365|ontology_enrichment_uberon_v019=UBERON:0000988;1.12e-38;3!UBERON:0002298;6.17e-20;6!UBERON:0002148;1.91e-15;2!UBERON:0006331;1.91e-15;2!UBERON:0009662;1.91e-15;2!UBERON:0002680;1.19e-13;9!UBERON:0001895;1.19e-13;9!UBERON:0004733;1.72e-10;12!UBERON:0002028;1.72e-10;12!UBERON:0004732;9.30e-10;13!UBERON:0002021;5.86e-07;5!UBERON:0000013;5.86e-07;5!UBERON:0002410;5.86e-07;5!UBERON:0003528;6.10e-07;34!UBERON:0002020;6.10e-07;34!UBERON:0001016;7.40e-07;83|ontology_enrichment_uberon_v019_2=UBERON:0000988,1.23e-38,3;UBERON:0002298,6.48e-20,6;UBERON:0002148,2.05e-15,2;UBERON:0006331,2.05e-15,2;UBERON:0009662,2.05e-15,2;UBERON:0002680,1.23e-13,9;UBERON:0001895,1.23e-13,9;UBERON:0010092,1.23e-13,9;UBERON:0001016,2.42e-11,89;UBERON:0004733,1.77e-10,12;UBERON:0002028,1.77e-10,12;UBERON:0007277,1.77e-10,12;UBERON:0004732,9.51e-10,13;UBERON:0000073,6.41e-09,53;UBERON:0002616,6.41e-09,53;UBERON:0001017,6.78e-09,81;UBERON:0003076,1.42e-08,15;UBERON:0003057,1.42e-08,15;UBERON:0001049,1.79e-08,56;UBERON:0005068,1.79e-08,56;UBERON:0006241,1.79e-08,56;UBERON:0007135,1.79e-08,56;UBERON:0003528,5.33e-08,34;UBERON:0002020,5.33e-08,34;UBERON:0002021,5.08e-07,5;UBERON:0000955,5.66e-07,68;UBERON:0006238,5.66e-07,68;UBERON:0000013,6.39e-07,5;UBERON:0002410,6.39e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.502548796003046,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3380 | |||
|TSSclassifier=S | |||
|UniProt=Q9Y2J2,F5GX05 | |||
|association_with_transcript=60bp_to_ENST00000342933,ENST00000400111,ENST00000544123,uc010wzh.1_5end | |||
|description=CAGE_peak_20_at_EPB41L3_5end | |||
|id=chr18:5540484..5540494,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.91e-15;2!CL:0000333;5.86e-07;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.30e-52!57;UBERON:0005068!9.30e-52!57;UBERON:0006241!9.30e-52!57;UBERON:0007135!9.30e-52!57;UBERON:0001017!4.93e-46!82;UBERON:0005743!1.68e-43!86;UBERON:0002619!2.47e-43!22;UBERON:0002616!3.46e-43!59;UBERON:0001950!1.20e-42!20;UBERON:0000073!3.90e-41!94;UBERON:0001016!3.90e-41!94;UBERON:0003075!5.12e-41!86;UBERON:0007284!5.12e-41!86;UBERON:0002346!8.42e-39!90;UBERON:0000955!6.25e-38!69;UBERON:0006238!6.25e-38!69;UBERON:0000956!8.89e-38!25;UBERON:0000203!8.89e-38!25;UBERON:0002020!1.89e-37!34;UBERON:0003528!1.89e-37!34;UBERON:0001893!3.87e-37!34;UBERON:0001869!6.04e-36!32;UBERON:0002791!1.76e-34!33;UBERON:0002780!2.54e-33!41;UBERON:0001890!2.54e-33!41;UBERON:0006240!2.54e-33!41;UBERON:0003080!2.08e-32!42;UBERON:0001871!1.46e-26!7;UBERON:0007023!1.51e-26!115;UBERON:0004121!6.85e-23!169;UBERON:0003056!9.87e-23!61;UBERON:0000924!3.87e-22!173;UBERON:0006601!3.87e-22!173;UBERON:0000033!5.81e-21!123;UBERON:0003076!7.95e-21!15;UBERON:0003057!7.95e-21!15;UBERON:0000153!1.29e-19!129;UBERON:0007811!1.29e-19!129;UBERON:0004733!4.71e-17!12;UBERON:0002028!4.71e-17!12;UBERON:0007277!4.71e-17!12;UBERON:0004732!1.25e-15!13;UBERON:0002298!2.33e-15!8;UBERON:0000200!4.37e-14!6;UBERON:0000025!2.33e-13!194;UBERON:0000988!1.01e-11!3;UBERON:0002021!1.90e-11!5;UBERON:0002771!7.57e-11!3;UBERON:0000349!9.19e-11!5;UBERON:0001896!9.56e-11!3;UBERON:0005290!9.56e-11!3;UBERON:0010096!9.56e-11!3;UBERON:0004111!7.89e-10!241;UBERON:0000477!1.18e-09!286;UBERON:0002680!1.92e-09!9;UBERON:0001895!1.92e-09!9;UBERON:0010092!1.92e-09!9;UBERON:0000119!2.13e-09!312;UBERON:0000064!4.35e-09!219;UBERON:0000483!6.53e-09!309;UBERON:0002148!2.74e-08!2;UBERON:0009662!2.74e-08!2;UBERON:0001876!1.01e-07!2;UBERON:0000481!2.22e-07!347;UBERON:0002360!2.54e-07!2;UBERON:0000094!2.54e-07!2;UBERON:0007645!2.54e-07!2;UBERON:0000475!3.95e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000988;1.12e-38;3!UBERON:0002298;6.17e-20;6!UBERON:0002148;1.91e-15;2!UBERON:0006331;1.91e-15;2!UBERON:0009662;1.91e-15;2!UBERON:0002680;1.19e-13;9!UBERON:0001895;1.19e-13;9!UBERON:0004733;1.72e-10;12!UBERON:0002028;1.72e-10;12!UBERON:0004732;9.30e-10;13!UBERON:0002021;5.86e-07;5!UBERON:0000013;5.86e-07;5!UBERON:0002410;5.86e-07;5!UBERON:0003528;6.10e-07;34!UBERON:0002020;6.10e-07;34!UBERON:0001016;7.40e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000988,1.23e-38,3;UBERON:0002298,6.48e-20,6;UBERON:0002148,2.05e-15,2;UBERON:0006331,2.05e-15,2;UBERON:0009662,2.05e-15,2;UBERON:0002680,1.23e-13,9;UBERON:0001895,1.23e-13,9;UBERON:0010092,1.23e-13,9;UBERON:0001016,2.42e-11,89;UBERON:0004733,1.77e-10,12;UBERON:0002028,1.77e-10,12;UBERON:0007277,1.77e-10,12;UBERON:0004732,9.51e-10,13;UBERON:0000073,6.41e-09,53;UBERON:0002616,6.41e-09,53;UBERON:0001017,6.78e-09,81;UBERON:0003076,1.42e-08,15;UBERON:0003057,1.42e-08,15;UBERON:0001049,1.79e-08,56;UBERON:0005068,1.79e-08,56;UBERON:0006241,1.79e-08,56;UBERON:0007135,1.79e-08,56;UBERON:0003528,5.33e-08,34;UBERON:0002020,5.33e-08,34;UBERON:0002021,5.08e-07,5;UBERON:0000955,5.66e-07,68;UBERON:0006238,5.66e-07,68;UBERON:0000013,6.39e-07,5;UBERON:0002410,6.39e-07,5 | |||
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|short_description=p20@EPB41L3 | |||
}} |
Revision as of 17:49, 11 September 2013
Short description: | p20@EPB41L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_EPB41L3_5end |
Coexpression cluster: | NA |
Association with transcript: | 60bp_to_ENST00000342933, ENST00000400111, ENST00000544123, uc010wzh.1_5end |
EntrezGene: | EPB41L3 |
HGNC: | 3380 |
UniProt: | Q9Y2J2F5GX05 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pons | 1.23e-38 | 3 |
brainstem | 6.48e-20 | 6 |
locus ceruleus | 2.05e-15 | 2 |
brainstem nucleus | 2.05e-15 | 2 |
hindbrain nucleus | 2.05e-15 | 2 |
regional part of metencephalon | 1.23e-13 | 9 |
metencephalon | 1.23e-13 | 9 |
future metencephalon | 1.23e-13 | 9 |
nervous system | 2.42e-11 | 89 |
segmental subdivision of hindbrain | 1.77e-10 | 12 |
hindbrain | 1.77e-10 | 12 |
presumptive hindbrain | 1.77e-10 | 12 |
segmental subdivision of nervous system | 9.51e-10 | 13 |
regional part of nervous system | 6.41e-09 | 53 |
regional part of brain | 6.41e-09 | 53 |
central nervous system | 6.78e-09 | 81 |
posterior neural tube | 1.42e-08 | 15 |
chordal neural plate | 1.42e-08 | 15 |
neural tube | 1.79e-08 | 56 |
neural rod | 1.79e-08 | 56 |
future spinal cord | 1.79e-08 | 56 |
neural keel | 1.79e-08 | 56 |
brain grey matter | 5.33e-08 | 34 |
gray matter | 5.33e-08 | 34 |
occipital lobe | 5.08e-07 | 5 |
brain | 5.66e-07 | 68 |
future brain | 5.66e-07 | 68 |
sympathetic nervous system | 6.39e-07 | 5 |
autonomic nervous system | 6.39e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.