FFCP PHASE1:Hg19::chr19:571340..571366,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=682|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1116|TSSclassifier=S|UniProt=A6NJW1,P35613,Q54A51|association_with_transcript=15bp_to_NM_198591,uc002loy.2_5end|coexpression_cluster_id=C69|description=CAGE_peak_6_at_BSG_5end|id=chr19:571340..571366,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000764;1.28e-07;2!CL:0000558;1.28e-07;2|ontology_enrichment_celltype_v019_2=CL:0000764,3.39e-07,2;CL:0000765,3.39e-07,2;CL:0000050,3.39e-07,2;CL:0000038,3.39e-07,2;CL:0000558,3.39e-07,2;CL:0000547,3.39e-07,2;CL:0000549,3.39e-07,2;CL:0000550,3.39e-07,2;CL:0000552,3.39e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.61e-14!235;DOID:305!6.47e-14!106;DOID:14566!9.07e-14!239;DOID:0050687!2.96e-13!143;DOID:0050686!2.92e-07!137|ontology_enrichment_disease_v019=DOID:5093;2.53e-08;4!DOID:1612;2.53e-08;4!DOID:3910;1.28e-07;2|ontology_enrichment_disease_v019_2=DOID:162,1.64e-10,235;DOID:14566,4.05e-10,239;DOID:305,3.49e-09,106;DOID:0050686,9.81e-09,137;DOID:5093,1.32e-08,4;DOID:1612,1.32e-08,4;DOID:0050687,4.26e-08,143;DOID:3910,5.79e-08,2|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004903;1.28e-07;2!UBERON:0002173;1.28e-07;2!UBERON:0002186;1.28e-07;2!UBERON:0000945;8.11e-07;5!UBERON:0010039;8.11e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0004903,5.79e-08,2;UBERON:0002173,5.79e-08,2;UBERON:0002186,5.79e-08,2|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0.821246550437305,0.502170558379211,0.152826811495903,0.0821005894499457,0.236132343941038,0.393364276848904,0.383829398097213,0.619264493264304,0,0,0,0.0774672005803016,0,0.293600439334847,0,0,0,0.447830948479849,0,0.257575567634187,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.212604299965044,0.209658645508376,0.336985893439485,0.300353785683013,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0.196709770113833,0,0.411202997999018,0.167186495390678,0,0,0,0.111410456885174,0.294605907474837,0.221533894583621,0,0.128091319725675,0,0,0,0.289803085735052,0,0,0,0.226618685395132,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0.201606743224732,0,0.144824403882799,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.283604451492204,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0.324547393654683,0,0,0.238490624305342,0,0,0.596287222100115,0,0,0,0.838998872419812,0,0,0,0,0,0.402829317109147,0,0,0.367663080345869,0,0.17859945656816,0.44905874525234,0.337834441449967,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0.302714855289863,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0.206651562351531,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0.257640540045629,0,0,0.194874010322397,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0.473227200159376,0.842923450390509,1.20505514941741,1.10293972732394,1.08939722046203,0.237270619111097,0.808987848960987,0.784885860501384,0.769494313892781,0,0,0,0,0,3.9313088667105,1.18157981336281,2.20731549707325,0.983907508344908,0,0,1.1240175325762,0,0,0,0,0,0.463721619900307,0,0.288732895522148,0.462985512576611,0.380508304469197,1.58040879591855,1.71697232418975,0,0.702012795417713,0.594524649154913,0.93733833986777,0,0,0,0,0,0,0,0,0.432359860250884,0,0,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,1.50677127429638,0,0,0,0,0,0.205476322550383,0,0.336255431980582,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0.773288812777695,0,0,2.24702107184155,2.99161459204025,0.828831026872071,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32945394550784,0,0.0920809889358963,0.459257792658427,0,0,0,0.0770153371044148,0,1.46139224653261,0.211103257785751,0,0.170093705276516,0,0,0.541892875087706,0,0,0.831076008928724,0.671624264166535,1.09629938322967,1.0457418040996,0.256450125116389,0,0.650756789328606,0.103041011647722,1.00726411300178,2.14524699793529,0,0,0,0,0,0,0,0.107420244868274,0.145016693914229,0,0.0890320356467374,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.409499734223957,0.565621727814851,0,0,0,0,0,0,0.202910376962704,0,0,0,0.196498082026242,0,0,0,0.329294892959902,0,0.349934720244983,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0.507447609232169,1.52927441428475,2.84823593587081,0,0.411362273086194,0.648473311192717,0,0.79312517629427,0.534120355637366,0,0,0,0,0.2134255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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=682 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1116 | |||
|TSSclassifier=S | |||
|UniProt=A6NJW1,P35613,Q54A51 | |||
|association_with_transcript=15bp_to_NM_198591,uc002loy.2_5end | |||
|coexpression_cluster_id=C69 | |||
|description=CAGE_peak_6_at_BSG_5end | |||
|id=chr19:571340..571366,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;1.28e-07;2!CL:0000558;1.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,3.39e-07,2;CL:0000765,3.39e-07,2;CL:0000050,3.39e-07,2;CL:0000038,3.39e-07,2;CL:0000558,3.39e-07,2;CL:0000547,3.39e-07,2;CL:0000549,3.39e-07,2;CL:0000550,3.39e-07,2;CL:0000552,3.39e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.61e-14!235;DOID:305!6.47e-14!106;DOID:14566!9.07e-14!239;DOID:0050687!2.96e-13!143;DOID:0050686!2.92e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.53e-08;4!DOID:1612;2.53e-08;4!DOID:3910;1.28e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.64e-10,235;DOID:14566,4.05e-10,239;DOID:305,3.49e-09,106;DOID:0050686,9.81e-09,137;DOID:5093,1.32e-08,4;DOID:1612,1.32e-08,4;DOID:0050687,4.26e-08,143;DOID:3910,5.79e-08,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.28e-07;2!UBERON:0002173;1.28e-07;2!UBERON:0002186;1.28e-07;2!UBERON:0000945;8.11e-07;5!UBERON:0010039;8.11e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,5.79e-08,2;UBERON:0002173,5.79e-08,2;UBERON:0002186,5.79e-08,2 | |||
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| |||
|short_description=p6@BSG | |||
}} |
Revision as of 22:34, 11 September 2013
Short description: | p6@BSG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_BSG_5end |
Coexpression cluster: | C69_anaplastic_CD14_cord_hairy_mycosis_adult_NK |
Association with transcript: | 15bp_to_NM_198591, uc002loy.2_5end |
EntrezGene: | BSG |
HGNC: | 1116 |
UniProt: | A6NJW1P35613Q54A51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 3.39e-07 | 2 |
erythroblast | 3.39e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 3.39e-07 | 2 |
erythroid progenitor cell | 3.39e-07 | 2 |
reticulocyte | 3.39e-07 | 2 |
proerythroblast | 3.39e-07 | 2 |
basophilic erythroblast | 3.39e-07 | 2 |
polychromatophilic erythroblast | 3.39e-07 | 2 |
orthochromatic erythroblast | 3.39e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 5.79e-08 | 2 |
alveolar duct | 5.79e-08 | 2 |
bronchiole | 5.79e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.64e-10 | 235 |
disease of cellular proliferation | 4.05e-10 | 239 |
carcinoma | 3.49e-09 | 106 |
organ system cancer | 9.81e-09 | 137 |
thoracic cancer | 1.32e-08 | 4 |
breast cancer | 1.32e-08 | 4 |
cell type cancer | 4.26e-08 | 143 |
lung adenocarcinoma | 5.79e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.