FFCP PHASE1:Hg19::chr1:13840483..13840521,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=126755|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27005|TSSclassifier=S|UniProt=Q5VT99|association_with_transcript=21bp_to_ENST00000376085_5end|coexpression_cluster_id=C24|description=CAGE_peak_1_at_LRRC38_5end|id=chr1:13840483..13840521,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000123;1.78e-07;2!CL:0000242;1.78e-07;2|ontology_enrichment_celltype_v019_2=CL:0000242,2.09e-07,2|ontology_enrichment_development_v019=UBERON:0006601;3.03e-08;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.70e-36!115;UBERON:0001049!1.08e-15!57;UBERON:0005068!1.08e-15!57;UBERON:0006241!1.08e-15!57;UBERON:0007135!1.08e-15!57;UBERON:0002346!4.12e-15!90;UBERON:0003075!4.66e-14!86;UBERON:0007284!4.66e-14!86;UBERON:0001017!5.90e-14!82;UBERON:0005743!1.15e-13!86;UBERON:0000477!3.70e-13!286;UBERON:0000955!7.04e-13!69;UBERON:0006238!7.04e-13!69;UBERON:0004111!1.53e-12!241;UBERON:0002616!2.15e-12!59;UBERON:0000073!3.48e-12!94;UBERON:0001016!3.48e-12!94;UBERON:0001950!5.99e-12!20;UBERON:0000025!8.87e-12!194;UBERON:0001893!1.58e-10!34;UBERON:0002619!1.60e-10!22;UBERON:0002020!1.95e-10!34;UBERON:0003528!1.95e-10!34;UBERON:0002780!2.64e-10!41;UBERON:0001890!2.64e-10!41;UBERON:0006240!2.64e-10!41;UBERON:0003080!6.46e-10!42;UBERON:0000119!1.00e-09!312;UBERON:0002791!1.14e-09!33;UBERON:0000483!1.31e-09!309;UBERON:0007100!1.64e-09!27;UBERON:0001869!4.23e-09!32;UBERON:0000956!8.18e-09!25;UBERON:0000203!8.18e-09!25;UBERON:0000153!8.79e-09!129;UBERON:0007811!8.79e-09!129;UBERON:0000924!6.74e-08!173;UBERON:0006601!6.74e-08!173;UBERON:0003103!1.21e-07!69;UBERON:0000481!1.32e-07!347;UBERON:0003076!1.71e-07!15;UBERON:0003057!1.71e-07!15;UBERON:0000948!2.80e-07!24;UBERON:0005498!2.80e-07!24;UBERON:0004140!2.80e-07!24;UBERON:0009881!2.80e-07!24;UBERON:0004141!2.80e-07!24;UBERON:0003084!2.80e-07!24;UBERON:0007005!2.80e-07!24;UBERON:0004139!2.80e-07!24;UBERON:0004291!2.80e-07!24;UBERON:0004121!3.44e-07!169;UBERON:0000062!4.17e-07!511;UBERON:0000033!5.41e-07!123;UBERON:0000468!6.59e-07!659|ontology_enrichment_uberon_v019=UBERON:0001950;2.99e-10;20!UBERON:0004151;1.43e-09;3!UBERON:0002619;3.21e-09;22!UBERON:0001905;2.46e-08;2!UBERON:0002757;2.46e-08;2!UBERON:0010134;2.46e-08;2!UBERON:0005408;2.46e-08;2!UBERON:0001899;2.46e-08;2!UBERON:0005090;3.02e-08;2!UBERON:0001630;3.02e-08;2!UBERON:0000956;5.68e-08;25!UBERON:0000203;5.68e-08;25!UBERON:0000341;6.49e-08;2!UBERON:0002370;7.55e-08;2!UBERON:0005058;7.55e-08;2!UBERON:0009113;7.55e-08;2!UBERON:0001869;2.44e-07;32!UBERON:0002133;3.60e-07;2!UBERON:0002081;6.32e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.67e-13,114;UBERON:0002346,2.66e-13,86;UBERON:0001049,3.41e-13,56;UBERON:0005068,3.41e-13,56;UBERON:0006241,3.41e-13,56;UBERON:0007135,3.41e-13,56;UBERON:0001017,2.00e-11,81;UBERON:0010314,2.36e-11,132;UBERON:0003075,2.81e-11,82;UBERON:0007284,2.81e-11,82;UBERON:0001016,6.41e-11,89;UBERON:0000073,7.17e-11,53;UBERON:0002616,7.17e-11,53;UBERON:0001950,3.64e-10,20;UBERON:0000955,3.99e-10,68;UBERON:0006238,3.99e-10,68;UBERON:0010371,6.27e-10,104;UBERON:0004151,1.44e-09,3;UBERON:0002619,3.84e-09,22;UBERON:0004121,6.88e-09,171;UBERON:0000924,6.88e-09,171;UBERON:0006601,6.88e-09,171;UBERON:0000483,8.25e-09,306;UBERON:0000119,1.25e-08,309;UBERON:0001905,2.46e-08,2;UBERON:0002757,2.46e-08,2;UBERON:0010134,2.46e-08,2;UBERON:0005408,2.46e-08,2;UBERON:0001899,2.46e-08,2;UBERON:0005090,3.03e-08,2;UBERON:0001630,3.03e-08,2;UBERON:0002780,3.68e-08,41;UBERON:0001890,3.68e-08,41;UBERON:0003080,3.68e-08,41;UBERON:0006240,3.68e-08,41;UBERON:0000341,6.19e-08,2;UBERON:0000956,6.62e-08,25;UBERON:0000203,6.62e-08,25;UBERON:0001869,2.61e-07,32;UBERON:0004111,2.63e-07,240;UBERON:0002133,3.38e-07,2;UBERON:0000025,4.35e-07,192;UBERON:0002081,5.77e-07,2;UBERON:0010227,5.77e-07,2;UBERON:0003076,8.15e-07,15;UBERON:0003057,8.15e-07,15;UBERON:0001893,8.68e-07,34;UBERON:0003528,9.70e-07,34;UBERON:0002020,9.70e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.361439152384566,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,1.67360306382335,4.43112248820062,0.760272105718513,9.76248230192678,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0.560677600142307,4.2699598291882,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16549671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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=126755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27005 | |||
|TSSclassifier=S | |||
|UniProt=Q5VT99 | |||
|association_with_transcript=21bp_to_ENST00000376085_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_1_at_LRRC38_5end | |||
|id=chr1:13840483..13840521,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.78e-07;2!CL:0000242;1.78e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.09e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.03e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.70e-36!115;UBERON:0001049!1.08e-15!57;UBERON:0005068!1.08e-15!57;UBERON:0006241!1.08e-15!57;UBERON:0007135!1.08e-15!57;UBERON:0002346!4.12e-15!90;UBERON:0003075!4.66e-14!86;UBERON:0007284!4.66e-14!86;UBERON:0001017!5.90e-14!82;UBERON:0005743!1.15e-13!86;UBERON:0000477!3.70e-13!286;UBERON:0000955!7.04e-13!69;UBERON:0006238!7.04e-13!69;UBERON:0004111!1.53e-12!241;UBERON:0002616!2.15e-12!59;UBERON:0000073!3.48e-12!94;UBERON:0001016!3.48e-12!94;UBERON:0001950!5.99e-12!20;UBERON:0000025!8.87e-12!194;UBERON:0001893!1.58e-10!34;UBERON:0002619!1.60e-10!22;UBERON:0002020!1.95e-10!34;UBERON:0003528!1.95e-10!34;UBERON:0002780!2.64e-10!41;UBERON:0001890!2.64e-10!41;UBERON:0006240!2.64e-10!41;UBERON:0003080!6.46e-10!42;UBERON:0000119!1.00e-09!312;UBERON:0002791!1.14e-09!33;UBERON:0000483!1.31e-09!309;UBERON:0007100!1.64e-09!27;UBERON:0001869!4.23e-09!32;UBERON:0000956!8.18e-09!25;UBERON:0000203!8.18e-09!25;UBERON:0000153!8.79e-09!129;UBERON:0007811!8.79e-09!129;UBERON:0000924!6.74e-08!173;UBERON:0006601!6.74e-08!173;UBERON:0003103!1.21e-07!69;UBERON:0000481!1.32e-07!347;UBERON:0003076!1.71e-07!15;UBERON:0003057!1.71e-07!15;UBERON:0000948!2.80e-07!24;UBERON:0005498!2.80e-07!24;UBERON:0004140!2.80e-07!24;UBERON:0009881!2.80e-07!24;UBERON:0004141!2.80e-07!24;UBERON:0003084!2.80e-07!24;UBERON:0007005!2.80e-07!24;UBERON:0004139!2.80e-07!24;UBERON:0004291!2.80e-07!24;UBERON:0004121!3.44e-07!169;UBERON:0000062!4.17e-07!511;UBERON:0000033!5.41e-07!123;UBERON:0000468!6.59e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.99e-10;20!UBERON:0004151;1.43e-09;3!UBERON:0002619;3.21e-09;22!UBERON:0001905;2.46e-08;2!UBERON:0002757;2.46e-08;2!UBERON:0010134;2.46e-08;2!UBERON:0005408;2.46e-08;2!UBERON:0001899;2.46e-08;2!UBERON:0005090;3.02e-08;2!UBERON:0001630;3.02e-08;2!UBERON:0000956;5.68e-08;25!UBERON:0000203;5.68e-08;25!UBERON:0000341;6.49e-08;2!UBERON:0002370;7.55e-08;2!UBERON:0005058;7.55e-08;2!UBERON:0009113;7.55e-08;2!UBERON:0001869;2.44e-07;32!UBERON:0002133;3.60e-07;2!UBERON:0002081;6.32e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.67e-13,114;UBERON:0002346,2.66e-13,86;UBERON:0001049,3.41e-13,56;UBERON:0005068,3.41e-13,56;UBERON:0006241,3.41e-13,56;UBERON:0007135,3.41e-13,56;UBERON:0001017,2.00e-11,81;UBERON:0010314,2.36e-11,132;UBERON:0003075,2.81e-11,82;UBERON:0007284,2.81e-11,82;UBERON:0001016,6.41e-11,89;UBERON:0000073,7.17e-11,53;UBERON:0002616,7.17e-11,53;UBERON:0001950,3.64e-10,20;UBERON:0000955,3.99e-10,68;UBERON:0006238,3.99e-10,68;UBERON:0010371,6.27e-10,104;UBERON:0004151,1.44e-09,3;UBERON:0002619,3.84e-09,22;UBERON:0004121,6.88e-09,171;UBERON:0000924,6.88e-09,171;UBERON:0006601,6.88e-09,171;UBERON:0000483,8.25e-09,306;UBERON:0000119,1.25e-08,309;UBERON:0001905,2.46e-08,2;UBERON:0002757,2.46e-08,2;UBERON:0010134,2.46e-08,2;UBERON:0005408,2.46e-08,2;UBERON:0001899,2.46e-08,2;UBERON:0005090,3.03e-08,2;UBERON:0001630,3.03e-08,2;UBERON:0002780,3.68e-08,41;UBERON:0001890,3.68e-08,41;UBERON:0003080,3.68e-08,41;UBERON:0006240,3.68e-08,41;UBERON:0000341,6.19e-08,2;UBERON:0000956,6.62e-08,25;UBERON:0000203,6.62e-08,25;UBERON:0001869,2.61e-07,32;UBERON:0004111,2.63e-07,240;UBERON:0002133,3.38e-07,2;UBERON:0000025,4.35e-07,192;UBERON:0002081,5.77e-07,2;UBERON:0010227,5.77e-07,2;UBERON:0003076,8.15e-07,15;UBERON:0003057,8.15e-07,15;UBERON:0001893,8.68e-07,34;UBERON:0003528,9.70e-07,34;UBERON:0002020,9.70e-07,34 | |||
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|short_description=p1@LRRC38 | |||
}} |
Revision as of 23:58, 11 September 2013
Short description: | p1@LRRC38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LRRC38_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 21bp_to_ENST00000376085_5end |
EntrezGene: | LRRC38 |
HGNC: | 27005 |
UniProt: | Q5VT99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.09e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.