FFCP PHASE1:Hg19::chr1:153957852..153957877,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5872|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9762|TSSclassifier=W|UniProt=|association_with_transcript=-14bp_to_ENST00000484297_5end|description=CAGE_peak_6_at_RAB13_5end|id=chr1:153957852..153957877,-|ontology_enrichment_celltype=CL:0000055!2.86e-35!180;CL:0000393!3.72e-22!60;CL:0000211!3.72e-22!60;CL:0000680!3.12e-20!57;CL:0000056!3.12e-20!57;CL:0000355!3.12e-20!57;CL:0000183!4.33e-20!59;CL:0000187!7.85e-19!54;CL:0000048!1.55e-17!430;CL:0000034!1.65e-17!444;CL:0000723!5.07e-17!436;CL:0002371!5.43e-16!591;CL:0000144!7.19e-15!625;CL:0000192!1.47e-14!42;CL:0000514!1.47e-14!42;CL:0000057!8.43e-12!75;CL:0000359!8.67e-11!32;CL:0000548!1.67e-09!679;CL:0000004!1.67e-09!679;CL:0000255!1.67e-09!679;CL:0000012!1.94e-09!682;CL:0000222!5.15e-07!119|ontology_enrichment_celltype_v019=CL:0000393;1.79e-14;61!CL:0000211;1.79e-14;61!CL:0000187;1.79e-13;55!CL:0000192;3.92e-12;43!CL:0000188;2.11e-09;9!CL:0000723;3.75e-09;61!CL:0000359;5.70e-09;32!CL:0000048;7.67e-09;58!CL:0002570;4.68e-08;8!CL:0000134;6.70e-08;55!CL:0000034;2.22e-07;69!CL:0002595;5.44e-07;5|ontology_enrichment_celltype_v019_2=CL:0000393,2.52e-28,61;CL:0000211,2.52e-28,61;CL:0000680,4.65e-25,58;CL:0000056,4.65e-25,58;CL:0000355,4.65e-25,58;CL:0000187,6.07e-24,55;CL:0000048,9.25e-18,427;CL:0000723,4.54e-17,433;CL:0000034,8.22e-17,441;CL:0000192,1.09e-16,43;CL:0000514,1.09e-16,43;CL:0000359,7.21e-10,32;CL:0000188,7.53e-10,9;CL:0000057,1.22e-08,76;CL:0000222,1.45e-08,121;CL:0000047,3.26e-08,8;CL:0002570,3.58e-08,8;CL:0002595,3.44e-07,5|ontology_enrichment_development_v019=CL:0000355;3.46e-13;58!CL:0000514;3.92e-12;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!3.30e-22!83;UBERON:0002329!3.30e-22!83;UBERON:0003077!3.30e-22!83;UBERON:0003059!3.30e-22!83;UBERON:0007282!3.30e-22!83;UBERON:0009618!3.30e-22!83;UBERON:0007285!3.30e-22!83;UBERON:0004290!3.72e-20!70;UBERON:0001134!5.13e-18!61;UBERON:0002036!5.13e-18!61;UBERON:0003082!5.13e-18!61;UBERON:0000486!1.49e-17!82;UBERON:0002385!2.77e-17!63;UBERON:0001015!2.77e-17!63;UBERON:0000383!2.77e-17!63;UBERON:0005256!3.50e-12!143;UBERON:0002204!1.33e-09!167;UBERON:0004573!4.07e-07!33;UBERON:0004571!4.07e-07!33;UBERON:0000475!9.75e-07!365|ontology_enrichment_uberon_v019=UBERON:0002385;2.98e-13;31!UBERON:0001015;2.98e-13;31!UBERON:0000383;2.98e-13;31!UBERON:0011135;5.60e-09;5!UBERON:0002216;5.60e-09;5!UBERON:0011134;5.60e-09;5!UBERON:0002209;5.60e-09;5!UBERON:0002213;5.60e-09;5!UBERON:0007844;5.60e-09;5!UBERON:0011138;5.60e-09;5!UBERON:0001130;5.60e-09;5!UBERON:0001066;5.60e-09;5!UBERON:0001468;5.60e-09;5!UBERON:0001135;6.24e-08;15!UBERON:0000075;2.65e-07;16!UBERON:0002204;3.22e-07;70!UBERON:0001134;4.10e-07;16!UBERON:0002036;4.10e-07;16!UBERON:0006876;4.26e-07;11!UBERON:0004905;4.77e-07;8!UBERON:0000982;4.77e-07;8!UBERON:0004770;4.77e-07;8!UBERON:0003834;5.44e-07;5!UBERON:0001533;5.44e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.58e-25,73;UBERON:0002329,5.01e-25,71;UBERON:0003059,5.01e-25,71;UBERON:0007282,5.01e-25,71;UBERON:0004290,5.01e-25,71;UBERON:0009618,5.01e-25,71;UBERON:0003077,1.75e-24,72;UBERON:0007285,1.75e-24,72;UBERON:0001134,1.23e-22,62;UBERON:0002036,1.23e-22,62;UBERON:0003082,1.23e-22,62;UBERON:0000486,1.21e-21,83;UBERON:0002385,1.52e-21,64;UBERON:0001015,1.52e-21,64;UBERON:0000383,1.52e-21,64;UBERON:0007503,1.55e-21,78;UBERON:0003104,2.62e-12,160;UBERON:0009142,2.62e-12,160;UBERON:0005256,3.47e-12,122;UBERON:0002204,4.37e-11,167;UBERON:0000490,4.04e-09,148;UBERON:0011135,5.26e-09,5;UBERON:0002216,5.26e-09,5;UBERON:0011134,5.26e-09,5;UBERON:0002209,5.26e-09,5;UBERON:0002213,5.26e-09,5;UBERON:0005856,5.26e-09,5;UBERON:0005866,5.26e-09,5;UBERON:0005863,5.26e-09,5;UBERON:0007844,5.26e-09,5;UBERON:0011138,5.26e-09,5;UBERON:0001130,5.26e-09,5;UBERON:0001066,5.26e-09,5;UBERON:0001468,5.26e-09,5;UBERON:0001135,5.54e-08,15;UBERON:0000075,1.77e-07,16;UBERON:0003834,3.44e-07,5;UBERON:0001533,3.44e-07,5;UBERON:0004905,3.94e-07,8;UBERON:0000982,3.94e-07,8;UBERON:0004770,3.94e-07,8;UBERON:0000926,5.61e-07,315;UBERON:0004120,5.61e-07,315;UBERON:0006603,5.61e-07,315;UBERON:0006876,8.79e-07,11|phase1_expression=1.45342703416445,0,0.986680828671798,1.0007329835313,0.893922188854576,0,0,3.15859936713415,0.522371256399677,0.491467873003018,0,0.218441372130172,0,9.65377553088364,4.63956326019082,3.36162573225888,1.80808358407193,3.65155045193687,0.975865597581014,0.984968464614303,1.02000345622126,0,1.43117993565528,0.958120975510189,0.376627918784408,0.152826811495903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0.232429036905685,0.822335776043652,0.309706370895104,0.575384784644301,0,0,0.344745680736619,0,1.35426486594342,0.188242339542605,0.272906150057846,1.12361742222542,0.918251677112708,0.641858054152187,0,0,0,0,0.580418477257168,0,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0.368277635987565,0.94938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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5872 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9762 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-14bp_to_ENST00000484297_5end | |||
|description=CAGE_peak_6_at_RAB13_5end | |||
|id=chr1:153957852..153957877,- | |||
|ontology_enrichment_celltype=CL:0000055!2.86e-35!180;CL:0000393!3.72e-22!60;CL:0000211!3.72e-22!60;CL:0000680!3.12e-20!57;CL:0000056!3.12e-20!57;CL:0000355!3.12e-20!57;CL:0000183!4.33e-20!59;CL:0000187!7.85e-19!54;CL:0000048!1.55e-17!430;CL:0000034!1.65e-17!444;CL:0000723!5.07e-17!436;CL:0002371!5.43e-16!591;CL:0000144!7.19e-15!625;CL:0000192!1.47e-14!42;CL:0000514!1.47e-14!42;CL:0000057!8.43e-12!75;CL:0000359!8.67e-11!32;CL:0000548!1.67e-09!679;CL:0000004!1.67e-09!679;CL:0000255!1.67e-09!679;CL:0000012!1.94e-09!682;CL:0000222!5.15e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000393;1.79e-14;61!CL:0000211;1.79e-14;61!CL:0000187;1.79e-13;55!CL:0000192;3.92e-12;43!CL:0000188;2.11e-09;9!CL:0000723;3.75e-09;61!CL:0000359;5.70e-09;32!CL:0000048;7.67e-09;58!CL:0002570;4.68e-08;8!CL:0000134;6.70e-08;55!CL:0000034;2.22e-07;69!CL:0002595;5.44e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.52e-28,61;CL:0000211,2.52e-28,61;CL:0000680,4.65e-25,58;CL:0000056,4.65e-25,58;CL:0000355,4.65e-25,58;CL:0000187,6.07e-24,55;CL:0000048,9.25e-18,427;CL:0000723,4.54e-17,433;CL:0000034,8.22e-17,441;CL:0000192,1.09e-16,43;CL:0000514,1.09e-16,43;CL:0000359,7.21e-10,32;CL:0000188,7.53e-10,9;CL:0000057,1.22e-08,76;CL:0000222,1.45e-08,121;CL:0000047,3.26e-08,8;CL:0002570,3.58e-08,8;CL:0002595,3.44e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000355;3.46e-13;58!CL:0000514;3.92e-12;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.30e-22!83;UBERON:0002329!3.30e-22!83;UBERON:0003077!3.30e-22!83;UBERON:0003059!3.30e-22!83;UBERON:0007282!3.30e-22!83;UBERON:0009618!3.30e-22!83;UBERON:0007285!3.30e-22!83;UBERON:0004290!3.72e-20!70;UBERON:0001134!5.13e-18!61;UBERON:0002036!5.13e-18!61;UBERON:0003082!5.13e-18!61;UBERON:0000486!1.49e-17!82;UBERON:0002385!2.77e-17!63;UBERON:0001015!2.77e-17!63;UBERON:0000383!2.77e-17!63;UBERON:0005256!3.50e-12!143;UBERON:0002204!1.33e-09!167;UBERON:0004573!4.07e-07!33;UBERON:0004571!4.07e-07!33;UBERON:0000475!9.75e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.98e-13;31!UBERON:0001015;2.98e-13;31!UBERON:0000383;2.98e-13;31!UBERON:0011135;5.60e-09;5!UBERON:0002216;5.60e-09;5!UBERON:0011134;5.60e-09;5!UBERON:0002209;5.60e-09;5!UBERON:0002213;5.60e-09;5!UBERON:0007844;5.60e-09;5!UBERON:0011138;5.60e-09;5!UBERON:0001130;5.60e-09;5!UBERON:0001066;5.60e-09;5!UBERON:0001468;5.60e-09;5!UBERON:0001135;6.24e-08;15!UBERON:0000075;2.65e-07;16!UBERON:0002204;3.22e-07;70!UBERON:0001134;4.10e-07;16!UBERON:0002036;4.10e-07;16!UBERON:0006876;4.26e-07;11!UBERON:0004905;4.77e-07;8!UBERON:0000982;4.77e-07;8!UBERON:0004770;4.77e-07;8!UBERON:0003834;5.44e-07;5!UBERON:0001533;5.44e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.58e-25,73;UBERON:0002329,5.01e-25,71;UBERON:0003059,5.01e-25,71;UBERON:0007282,5.01e-25,71;UBERON:0004290,5.01e-25,71;UBERON:0009618,5.01e-25,71;UBERON:0003077,1.75e-24,72;UBERON:0007285,1.75e-24,72;UBERON:0001134,1.23e-22,62;UBERON:0002036,1.23e-22,62;UBERON:0003082,1.23e-22,62;UBERON:0000486,1.21e-21,83;UBERON:0002385,1.52e-21,64;UBERON:0001015,1.52e-21,64;UBERON:0000383,1.52e-21,64;UBERON:0007503,1.55e-21,78;UBERON:0003104,2.62e-12,160;UBERON:0009142,2.62e-12,160;UBERON:0005256,3.47e-12,122;UBERON:0002204,4.37e-11,167;UBERON:0000490,4.04e-09,148;UBERON:0011135,5.26e-09,5;UBERON:0002216,5.26e-09,5;UBERON:0011134,5.26e-09,5;UBERON:0002209,5.26e-09,5;UBERON:0002213,5.26e-09,5;UBERON:0005856,5.26e-09,5;UBERON:0005866,5.26e-09,5;UBERON:0005863,5.26e-09,5;UBERON:0007844,5.26e-09,5;UBERON:0011138,5.26e-09,5;UBERON:0001130,5.26e-09,5;UBERON:0001066,5.26e-09,5;UBERON:0001468,5.26e-09,5;UBERON:0001135,5.54e-08,15;UBERON:0000075,1.77e-07,16;UBERON:0003834,3.44e-07,5;UBERON:0001533,3.44e-07,5;UBERON:0004905,3.94e-07,8;UBERON:0000982,3.94e-07,8;UBERON:0004770,3.94e-07,8;UBERON:0000926,5.61e-07,315;UBERON:0004120,5.61e-07,315;UBERON:0006603,5.61e-07,315;UBERON:0006876,8.79e-07,11 | |||
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| |||
|short_description=p6@RAB13 | |||
}} |
Revision as of 00:36, 12 September 2013
Short description: | p6@RAB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_RAB13_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENST00000484297_5end |
EntrezGene: | RAB13 |
HGNC: | 9762 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.52e-28 | 61 |
electrically active cell | 2.52e-28 | 61 |
muscle precursor cell | 4.65e-25 | 58 |
myoblast | 4.65e-25 | 58 |
multi-potent skeletal muscle stem cell | 4.65e-25 | 58 |
muscle cell | 6.07e-24 | 55 |
multi fate stem cell | 9.25e-18 | 427 |
somatic stem cell | 4.54e-17 | 433 |
stem cell | 8.22e-17 | 441 |
smooth muscle cell | 1.09e-16 | 43 |
smooth muscle myoblast | 1.09e-16 | 43 |
vascular associated smooth muscle cell | 7.21e-10 | 32 |
cell of skeletal muscle | 7.53e-10 | 9 |
fibroblast | 1.22e-08 | 76 |
mesodermal cell | 1.45e-08 | 121 |
neuronal stem cell | 3.26e-08 | 8 |
mesenchymal stem cell of adipose | 3.58e-08 | 8 |
smooth muscle cell of the subclavian artery | 3.44e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.