FFCP PHASE1:Hg19::chr1:171711111..171711128,-: Difference between revisions
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{{FFCP | 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4465588601153,2.03448089157869,1.33151354837103,2.21401172950129,0.320568492303233|short_description=p3@VAMP4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8674 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12645 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=71bp_to_ENST00000474047_5end | |||
|description=CAGE_peak_3_at_VAMP4_5end | |||
|id=chr1:171711111..171711128,- | |||
|ontology_enrichment_celltype=CL:0000037!4.75e-08!172;CL:0000566!4.75e-08!172;CL:0000738!3.00e-07!140;CL:0002032!6.33e-07!165;CL:0000837!6.33e-07!165 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.87e-08,168;CL:0002032,4.44e-07,161;CL:0000837,4.44e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.63e-12!82;UBERON:0007023!1.33e-11!115;UBERON:0005743!1.64e-11!86;UBERON:0001049!2.39e-11!57;UBERON:0005068!2.39e-11!57;UBERON:0006241!2.39e-11!57;UBERON:0007135!2.39e-11!57;UBERON:0000073!1.59e-10!94;UBERON:0001016!1.59e-10!94;UBERON:0000955!4.91e-09!69;UBERON:0006238!4.91e-09!69;UBERON:0002780!7.77e-09!41;UBERON:0001890!7.77e-09!41;UBERON:0006240!7.77e-09!41;UBERON:0003080!9.21e-09!42;UBERON:0002616!1.07e-08!59;UBERON:0002020!3.68e-07!34;UBERON:0003528!3.68e-07!34;UBERON:0002619!6.22e-07!22;UBERON:0001869!6.72e-07!32;UBERON:0001893!9.10e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.56e-07;22!UBERON:0001950;9.78e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-13,81;UBERON:0001016,2.42e-12,89;UBERON:0001049,2.93e-12,56;UBERON:0005068,2.93e-12,56;UBERON:0006241,2.93e-12,56;UBERON:0007135,2.93e-12,56;UBERON:0000073,6.47e-11,53;UBERON:0002616,6.47e-11,53;UBERON:0007023,3.20e-10,114;UBERON:0000955,1.18e-09,68;UBERON:0006238,1.18e-09,68;UBERON:0002619,4.21e-09,22;UBERON:0002780,1.38e-08,41;UBERON:0001890,1.38e-08,41;UBERON:0003080,1.38e-08,41;UBERON:0006240,1.38e-08,41;UBERON:0001950,5.36e-08,20;UBERON:0003528,1.43e-07,34;UBERON:0002020,1.43e-07,34;UBERON:0001869,1.57e-07,32;UBERON:0000956,2.32e-07,25;UBERON:0000203,2.32e-07,25;UBERON:0002346,8.31e-07,86 | |||
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| |||
|short_description=p3@VAMP4 | |||
}} |
Revision as of 01:47, 12 September 2013
Short description: | p3@VAMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_VAMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 71bp_to_ENST00000474047_5end |
EntrezGene: | VAMP4 |
HGNC: | 12645 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.87e-08 | 168 |
hematopoietic oligopotent progenitor cell | 4.44e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.44e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.29e-13 | 81 |
nervous system | 2.42e-12 | 89 |
neural tube | 2.93e-12 | 56 |
neural rod | 2.93e-12 | 56 |
future spinal cord | 2.93e-12 | 56 |
neural keel | 2.93e-12 | 56 |
regional part of nervous system | 6.47e-11 | 53 |
regional part of brain | 6.47e-11 | 53 |
adult organism | 3.20e-10 | 114 |
brain | 1.18e-09 | 68 |
future brain | 1.18e-09 | 68 |
regional part of cerebral cortex | 4.21e-09 | 22 |
regional part of forebrain | 1.38e-08 | 41 |
forebrain | 1.38e-08 | 41 |
anterior neural tube | 1.38e-08 | 41 |
future forebrain | 1.38e-08 | 41 |
neocortex | 5.36e-08 | 20 |
brain grey matter | 1.43e-07 | 34 |
gray matter | 1.43e-07 | 34 |
cerebral hemisphere | 1.57e-07 | 32 |
cerebral cortex | 2.32e-07 | 25 |
pallium | 2.32e-07 | 25 |
neurectoderm | 8.31e-07 | 86 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.