FFCP PHASE1:Hg19::chr1:90420182..90420201,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C311|description=CAGE_peak_at_chr1:90420182..90420201,+|id=chr1:90420182..90420201,+|ontology_enrichment_celltype=CL:0000039!1.17e-28!7;CL:0000586!1.17e-28!7;CL:1000415!1.07e-11!2;CL:0002595!1.85e-10!5;CL:0002541!1.13e-08!3;CL:0000511!3.32e-07!1;CL:0002625!3.32e-07!1;CL:0000216!3.32e-07!1;CL:1001319!9.25e-07!1;CL:1000600!9.25e-07!1|ontology_enrichment_celltype_v019=CL:0002541;1.07e-33;3!CL:0000511;6.72e-26;1!CL:0002625;6.72e-26;1!CL:0000216;6.72e-26;1!CL:0000039;4.37e-15;7!CL:0000586;4.37e-15;7!CL:0000083;1.75e-07;4|ontology_enrichment_celltype_v019_2=CL:0002541,1.27e-33,3;CL:0000511,3.58e-26,1;CL:0002625,3.58e-26,1;CL:0000216,3.58e-26,1;CL:0000039,4.07e-15,7;CL:0000586,4.07e-15,7;CL:0000083,2.04e-07,4|ontology_enrichment_development_v019=UBERON:0009117;7.29e-11;10!UBERON:0005564;7.29e-11;10|ontology_enrichment_disease=DOID:3095!1.46e-11!22;DOID:2994!1.46e-11!22;DOID:0050687!1.54e-08!143;DOID:305!2.87e-07!106;DOID:1799!4.43e-07!1;DOID:10165!4.43e-07!1;DOID:1798!4.43e-07!1;DOID:178!5.26e-07!1;DOID:326!5.26e-07!1;DOID:3978!5.26e-07!1;DOID:3394!5.26e-07!1;DOID:5844!5.26e-07!1|ontology_enrichment_disease_v019=DOID:1799;6.72e-26;1!DOID:10165;6.72e-26;1!DOID:1798;6.72e-26;1!DOID:1793;1.75e-07;4|ontology_enrichment_disease_v019_2=DOID:1799,1.26e-25,1;DOID:10165,1.26e-25,1;DOID:1798,1.26e-25,1;DOID:1793,2.04e-07,4|ontology_enrichment_uberon=UBERON:0000473!8.77e-12!8;UBERON:0003834!1.85e-10!5;UBERON:0001533!1.85e-10!5;UBERON:0005631!9.32e-10!14;UBERON:0000158!9.32e-10!14;UBERON:0000476!1.13e-08!3;UBERON:0000920!1.13e-08!3;UBERON:0003135!1.38e-08!11;UBERON:0002110!4.39e-08!3;UBERON:0006242!4.39e-08!3;UBERON:0003124!8.11e-08!7;UBERON:0001136!3.32e-07!1;UBERON:0001343!3.32e-07!1;UBERON:0004910!3.32e-07!1;UBERON:0005154!3.32e-07!1;UBERON:0005295!3.32e-07!1;UBERON:0004813!3.32e-07!1;UBERON:0005297!3.32e-07!1;UBERON:0005294!3.32e-07!1;UBERON:0010141!3.32e-07!1;UBERON:0005891!3.32e-07!1;UBERON:0004871!8.57e-07!8;UBERON:0004645!9.25e-07!1;UBERON:0001256!9.25e-07!1;UBERON:0001259!9.25e-07!1|ontology_enrichment_uberon_v019=UBERON:0003124;1.07e-33;3!UBERON:0000920;1.07e-33;3!UBERON:0000473;2.49e-28;8!UBERON:0001136;6.72e-26;1!UBERON:0001343;6.72e-26;1!UBERON:0004910;6.72e-26;1!UBERON:0004813;6.72e-26;1!UBERON:0003135;7.74e-21;11!UBERON:0004909;1.14e-13;2!UBERON:0000991;2.85e-11;21!UBERON:0005631;7.29e-11;10!UBERON:0000158;7.29e-11;10!UBERON:0003101;8.62e-11;22!UBERON:0000079;8.62e-11;22!UBERON:0002323;9.98e-09;45!UBERON:0001052;1.31e-07;4!UBERON:0005904;1.75e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.27e-33,3;UBERON:0000473,1.80e-28,8;UBERON:0001136,3.58e-26,1;UBERON:0001343,3.58e-26,1;UBERON:0004910,3.58e-26,1;UBERON:0005154,3.58e-26,1;UBERON:0005295,3.58e-26,1;UBERON:0004813,3.58e-26,1;UBERON:0005297,3.58e-26,1;UBERON:0005294,3.58e-26,1;UBERON:0010141,3.58e-26,1;UBERON:0005891,3.58e-26,1;UBERON:0003135,6.11e-21,11;UBERON:0003124,4.69e-15,7;UBERON:0004909,8.28e-14,2;UBERON:0000991,2.52e-11,21;UBERON:0009196,2.52e-11,21;UBERON:0009117,2.52e-11,21;UBERON:0005564,2.52e-11,21;UBERON:0004176,7.66e-11,22;UBERON:0003101,7.66e-11,22;UBERON:0000079,7.66e-11,22;UBERON:0002323,4.91e-09,46;UBERON:0004458,1.66e-08,49;UBERON:0005631,5.18e-08,14;UBERON:0000158,5.18e-08,14;UBERON:0003886,9.43e-08,54;UBERON:0001052,1.31e-07,4;UBERON:0005904,1.49e-07,4;UBERON:0002553,6.67e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0.897576444097721,0.434589487688032,1.27600463892768,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522355239482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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C311 | |||
|description=CAGE_peak_at_chr1:90420182..90420201,+ | |||
|id=chr1:90420182..90420201,+ | |||
|ontology_enrichment_celltype=CL:0000039!1.17e-28!7;CL:0000586!1.17e-28!7;CL:1000415!1.07e-11!2;CL:0002595!1.85e-10!5;CL:0002541!1.13e-08!3;CL:0000511!3.32e-07!1;CL:0002625!3.32e-07!1;CL:0000216!3.32e-07!1;CL:1001319!9.25e-07!1;CL:1000600!9.25e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.07e-33;3!CL:0000511;6.72e-26;1!CL:0002625;6.72e-26;1!CL:0000216;6.72e-26;1!CL:0000039;4.37e-15;7!CL:0000586;4.37e-15;7!CL:0000083;1.75e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.27e-33,3;CL:0000511,3.58e-26,1;CL:0002625,3.58e-26,1;CL:0000216,3.58e-26,1;CL:0000039,4.07e-15,7;CL:0000586,4.07e-15,7;CL:0000083,2.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.29e-11;10!UBERON:0005564;7.29e-11;10 | |||
|ontology_enrichment_disease=DOID:3095!1.46e-11!22;DOID:2994!1.46e-11!22;DOID:0050687!1.54e-08!143;DOID:305!2.87e-07!106;DOID:1799!4.43e-07!1;DOID:10165!4.43e-07!1;DOID:1798!4.43e-07!1;DOID:178!5.26e-07!1;DOID:326!5.26e-07!1;DOID:3978!5.26e-07!1;DOID:3394!5.26e-07!1;DOID:5844!5.26e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;6.72e-26;1!DOID:10165;6.72e-26;1!DOID:1798;6.72e-26;1!DOID:1793;1.75e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.26e-25,1;DOID:10165,1.26e-25,1;DOID:1798,1.26e-25,1;DOID:1793,2.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000473!8.77e-12!8;UBERON:0003834!1.85e-10!5;UBERON:0001533!1.85e-10!5;UBERON:0005631!9.32e-10!14;UBERON:0000158!9.32e-10!14;UBERON:0000476!1.13e-08!3;UBERON:0000920!1.13e-08!3;UBERON:0003135!1.38e-08!11;UBERON:0002110!4.39e-08!3;UBERON:0006242!4.39e-08!3;UBERON:0003124!8.11e-08!7;UBERON:0001136!3.32e-07!1;UBERON:0001343!3.32e-07!1;UBERON:0004910!3.32e-07!1;UBERON:0005154!3.32e-07!1;UBERON:0005295!3.32e-07!1;UBERON:0004813!3.32e-07!1;UBERON:0005297!3.32e-07!1;UBERON:0005294!3.32e-07!1;UBERON:0010141!3.32e-07!1;UBERON:0005891!3.32e-07!1;UBERON:0004871!8.57e-07!8;UBERON:0004645!9.25e-07!1;UBERON:0001256!9.25e-07!1;UBERON:0001259!9.25e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.07e-33;3!UBERON:0000920;1.07e-33;3!UBERON:0000473;2.49e-28;8!UBERON:0001136;6.72e-26;1!UBERON:0001343;6.72e-26;1!UBERON:0004910;6.72e-26;1!UBERON:0004813;6.72e-26;1!UBERON:0003135;7.74e-21;11!UBERON:0004909;1.14e-13;2!UBERON:0000991;2.85e-11;21!UBERON:0005631;7.29e-11;10!UBERON:0000158;7.29e-11;10!UBERON:0003101;8.62e-11;22!UBERON:0000079;8.62e-11;22!UBERON:0002323;9.98e-09;45!UBERON:0001052;1.31e-07;4!UBERON:0005904;1.75e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.27e-33,3;UBERON:0000473,1.80e-28,8;UBERON:0001136,3.58e-26,1;UBERON:0001343,3.58e-26,1;UBERON:0004910,3.58e-26,1;UBERON:0005154,3.58e-26,1;UBERON:0005295,3.58e-26,1;UBERON:0004813,3.58e-26,1;UBERON:0005297,3.58e-26,1;UBERON:0005294,3.58e-26,1;UBERON:0010141,3.58e-26,1;UBERON:0005891,3.58e-26,1;UBERON:0003135,6.11e-21,11;UBERON:0003124,4.69e-15,7;UBERON:0004909,8.28e-14,2;UBERON:0000991,2.52e-11,21;UBERON:0009196,2.52e-11,21;UBERON:0009117,2.52e-11,21;UBERON:0005564,2.52e-11,21;UBERON:0004176,7.66e-11,22;UBERON:0003101,7.66e-11,22;UBERON:0000079,7.66e-11,22;UBERON:0002323,4.91e-09,46;UBERON:0004458,1.66e-08,49;UBERON:0005631,5.18e-08,14;UBERON:0000158,5.18e-08,14;UBERON:0003886,9.43e-08,54;UBERON:0001052,1.31e-07,4;UBERON:0005904,1.49e-07,4;UBERON:0002553,6.67e-07,61 | |||
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|short_description=p@chr1:90420182..90420201,+ | |||
}} |
Revision as of 07:09, 12 September 2013
Short description: | p@chr1:90420182..90420201, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:90420182..90420201, + |
Coexpression cluster: | C311_rectal_heart_choriocarcinoma_placenta_chorionic_lung_ductal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.27e-33 | 3 |
androgen binding protein secreting cell | 3.58e-26 | 1 |
seminiferous tubule epithelial cell | 3.58e-26 | 1 |
Sertoli cell | 3.58e-26 | 1 |
germ line cell | 4.07e-15 | 7 |
germ cell | 4.07e-15 | 7 |
epithelial cell of pancreas | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.27e-33 | 3 |
testis | 1.80e-28 | 8 |
mesothelium | 3.58e-26 | 1 |
seminiferous tubule of testis | 3.58e-26 | 1 |
epithelium of male gonad | 3.58e-26 | 1 |
epithelial cord | 3.58e-26 | 1 |
sex cord | 3.58e-26 | 1 |
seminiferous tubule epithelium | 3.58e-26 | 1 |
testis sex cord | 3.58e-26 | 1 |
genital ridge | 3.58e-26 | 1 |
primitive sex cord of indifferent gonad | 3.58e-26 | 1 |
coelomic epithelium | 3.58e-26 | 1 |
male reproductive organ | 6.11e-21 | 11 |
chorion | 4.69e-15 | 7 |
epithelium of gonad | 8.28e-14 | 2 |
gonad | 2.52e-11 | 21 |
indifferent external genitalia | 2.52e-11 | 21 |
indifferent gonad | 2.52e-11 | 21 |
gonad primordium | 2.52e-11 | 21 |
external genitalia | 7.66e-11 | 22 |
male organism | 7.66e-11 | 22 |
male reproductive system | 7.66e-11 | 22 |
body cavity | 4.91e-09 | 46 |
body cavity or lining | 1.66e-08 | 49 |
extraembryonic membrane | 5.18e-08 | 14 |
membranous layer | 5.18e-08 | 14 |
body cavity precursor | 9.43e-08 | 54 |
rectum | 1.31e-07 | 4 |
duct of male reproductive system | 1.49e-07 | 4 |
anatomical cavity | 6.67e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.26e-25 | 1 |
endocrine pancreas cancer | 1.26e-25 | 1 |
pancreatic endocrine carcinoma | 1.26e-25 | 1 |
pancreatic cancer | 2.04e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.