FFCP PHASE1:Hg19::chr20:33894879..33894903,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55245|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15891|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000472559_5end|description=CAGE_peak_2_at_UQCC_5end|id=chr20:33894879..33894903,-|ontology_enrichment_celltype=CL:0000220!3.66e-23!246;CL:0002321!1.50e-22!248;CL:0000548!1.14e-20!679;CL:0000004!1.14e-20!679;CL:0000255!1.14e-20!679;CL:0000012!4.30e-20!682;CL:0000144!6.40e-18!625;CL:0000055!5.14e-17!180;CL:0002371!3.47e-15!591;CL:0000066!1.69e-14!254;CL:0000003!5.62e-13!722;CL:0000222!2.77e-12!119;CL:0000057!1.14e-09!75;CL:1000507!2.05e-07!12;CL:1000494!2.05e-07!12;CL:0000063!2.98e-07!578;CL:0002076!4.95e-07!43;CL:1000449!6.94e-07!16|ontology_enrichment_celltype_v019=CL:1000449;1.31e-11;15!CL:1000497;1.50e-11;17!CL:0002518;1.50e-11;17!CL:1000507;6.51e-11;10!CL:1000494;6.51e-11;10!CL:0000077;2.27e-08;19!CL:0002681;3.59e-08;12!CL:0002584;3.59e-08;12|ontology_enrichment_celltype_v019_2=CL:1000449,2.94e-12,15;CL:1000497,5.02e-12,17;CL:0002518,5.02e-12,17;CL:1000507,2.62e-11,10;CL:1000494,2.62e-11,10;CL:0002681,1.28e-08,12;CL:0002584,1.28e-08,12;CL:0000066,1.92e-08,253;CL:0000077,2.83e-08,19;CL:0002321,7.44e-07,250|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!1.45e-11!143;UBERON:0002100!1.47e-10!216;UBERON:0003104!1.10e-09!238;UBERON:0009142!1.10e-09!238;UBERON:0000481!1.40e-09!347;UBERON:0000914!2.31e-09!83;UBERON:0002329!2.31e-09!83;UBERON:0003077!2.31e-09!83;UBERON:0003059!2.31e-09!83;UBERON:0007282!2.31e-09!83;UBERON:0009618!2.31e-09!83;UBERON:0007285!2.31e-09!83;UBERON:0000475!6.75e-08!365;UBERON:0004290!7.32e-08!70;UBERON:0000486!1.51e-07!82;UBERON:0009773!2.05e-07!12;UBERON:0001231!2.05e-07!12;UBERON:0004810!2.05e-07!12;UBERON:0000119!3.60e-07!312;UBERON:0000483!5.53e-07!309;UBERON:0004211!6.94e-07!16;UBERON:0001285!6.94e-07!16;UBERON:0007684!6.94e-07!16;UBERON:0003220!6.94e-07!16;UBERON:0004208!6.94e-07!16|ontology_enrichment_uberon_v019=UBERON:0006555;1.31e-11;15!UBERON:0004819;1.31e-11;15!UBERON:0001285;1.31e-11;15!UBERON:0007684;1.31e-11;15!UBERON:0004211;6.51e-11;10!UBERON:0009773;6.51e-11;10!UBERON:0001231;6.51e-11;10!UBERON:0004810;6.51e-11;10!UBERON:0011135;2.59e-08;5!UBERON:0002216;2.59e-08;5!UBERON:0011134;2.59e-08;5!UBERON:0002209;2.59e-08;5!UBERON:0002213;2.59e-08;5!UBERON:0007844;2.59e-08;5!UBERON:0011138;2.59e-08;5!UBERON:0001130;2.59e-08;5!UBERON:0001066;2.59e-08;5!UBERON:0001468;2.59e-08;5!UBERON:0001225;3.59e-08;12!UBERON:0008987;3.59e-08;12!UBERON:0000353;6.95e-08;15!UBERON:0001851;1.60e-07;15!UBERON:0002113;3.39e-07;24!UBERON:0011143;3.39e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.94e-12,15;UBERON:0009773,2.94e-12,15;UBERON:0001231,2.94e-12,15;UBERON:0001285,2.94e-12,15;UBERON:0007684,2.94e-12,15;UBERON:0004208,2.94e-12,15;UBERON:0004810,2.62e-11,10;UBERON:0006555,2.78e-11,16;UBERON:0004819,2.78e-11,16;UBERON:0001225,1.28e-08,12;UBERON:0008987,1.28e-08,12;UBERON:0011135,1.98e-08,5;UBERON:0002216,1.98e-08,5;UBERON:0011134,1.98e-08,5;UBERON:0002209,1.98e-08,5;UBERON:0002213,1.98e-08,5;UBERON:0005856,1.98e-08,5;UBERON:0005866,1.98e-08,5;UBERON:0005863,1.98e-08,5;UBERON:0007844,1.98e-08,5;UBERON:0011138,1.98e-08,5;UBERON:0001130,1.98e-08,5;UBERON:0001066,1.98e-08,5;UBERON:0001468,1.98e-08,5;UBERON:0000353,2.78e-08,15;UBERON:0001851,6.30e-08,15;UBERON:0003104,2.41e-07,160;UBERON:0009142,2.41e-07,160|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,1.0007329835313,0,0.872338524100369,0,0,0,0.491467873003018,2.79120467188971,0.218441372130172,1.05506791291381,3.58922423584135,4.97096063591874,0,0,0.730310090387373,0.487932798790507,2.09305798730539,3.06001036866379,0.940364164434263,0.572471974262113,2.6006140763848,1.25542639594803,0,0,0,0,0,0,0,1.50602959389125,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.850813354476611,1.33037638477538,0.527008714158756,0,0.728590576585084,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0.838998872419812,1.10047216776027,0.626984899610432,0.775250277507987,0.35576626268671,0.33472061276467,0.402829317109147,0,0.24406205754817,0.735326160691737,0,0.357198913136319,0,0,0,0,0,0,0,1.3082821564276,1.98788780678127,0.759783069987479,2.78059279707759,0,0.354668382198357,0.560677600142307,0,2.22000793575444,0.933633106199299,0.67355336034844,0.653847612453835,0,0,0.70296429550139,1.5608003841516,2.2818872861778,0.597794722207204,1.29177948508141,0.971237666208789,1.26405726032024,1.02077085627447,1.22834317311768,0.619954687054593,0,0,3.64064544775211,4.31170885089743,0.336672227908132,0.500474079487857,0.55412823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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55245 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15891 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000472559_5end | |||
|description=CAGE_peak_2_at_UQCC_5end | |||
|id=chr20:33894879..33894903,- | |||
|ontology_enrichment_celltype=CL:0000220!3.66e-23!246;CL:0002321!1.50e-22!248;CL:0000548!1.14e-20!679;CL:0000004!1.14e-20!679;CL:0000255!1.14e-20!679;CL:0000012!4.30e-20!682;CL:0000144!6.40e-18!625;CL:0000055!5.14e-17!180;CL:0002371!3.47e-15!591;CL:0000066!1.69e-14!254;CL:0000003!5.62e-13!722;CL:0000222!2.77e-12!119;CL:0000057!1.14e-09!75;CL:1000507!2.05e-07!12;CL:1000494!2.05e-07!12;CL:0000063!2.98e-07!578;CL:0002076!4.95e-07!43;CL:1000449!6.94e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.31e-11;15!CL:1000497;1.50e-11;17!CL:0002518;1.50e-11;17!CL:1000507;6.51e-11;10!CL:1000494;6.51e-11;10!CL:0000077;2.27e-08;19!CL:0002681;3.59e-08;12!CL:0002584;3.59e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,2.94e-12,15;CL:1000497,5.02e-12,17;CL:0002518,5.02e-12,17;CL:1000507,2.62e-11,10;CL:1000494,2.62e-11,10;CL:0002681,1.28e-08,12;CL:0002584,1.28e-08,12;CL:0000066,1.92e-08,253;CL:0000077,2.83e-08,19;CL:0002321,7.44e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.45e-11!143;UBERON:0002100!1.47e-10!216;UBERON:0003104!1.10e-09!238;UBERON:0009142!1.10e-09!238;UBERON:0000481!1.40e-09!347;UBERON:0000914!2.31e-09!83;UBERON:0002329!2.31e-09!83;UBERON:0003077!2.31e-09!83;UBERON:0003059!2.31e-09!83;UBERON:0007282!2.31e-09!83;UBERON:0009618!2.31e-09!83;UBERON:0007285!2.31e-09!83;UBERON:0000475!6.75e-08!365;UBERON:0004290!7.32e-08!70;UBERON:0000486!1.51e-07!82;UBERON:0009773!2.05e-07!12;UBERON:0001231!2.05e-07!12;UBERON:0004810!2.05e-07!12;UBERON:0000119!3.60e-07!312;UBERON:0000483!5.53e-07!309;UBERON:0004211!6.94e-07!16;UBERON:0001285!6.94e-07!16;UBERON:0007684!6.94e-07!16;UBERON:0003220!6.94e-07!16;UBERON:0004208!6.94e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.31e-11;15!UBERON:0004819;1.31e-11;15!UBERON:0001285;1.31e-11;15!UBERON:0007684;1.31e-11;15!UBERON:0004211;6.51e-11;10!UBERON:0009773;6.51e-11;10!UBERON:0001231;6.51e-11;10!UBERON:0004810;6.51e-11;10!UBERON:0011135;2.59e-08;5!UBERON:0002216;2.59e-08;5!UBERON:0011134;2.59e-08;5!UBERON:0002209;2.59e-08;5!UBERON:0002213;2.59e-08;5!UBERON:0007844;2.59e-08;5!UBERON:0011138;2.59e-08;5!UBERON:0001130;2.59e-08;5!UBERON:0001066;2.59e-08;5!UBERON:0001468;2.59e-08;5!UBERON:0001225;3.59e-08;12!UBERON:0008987;3.59e-08;12!UBERON:0000353;6.95e-08;15!UBERON:0001851;1.60e-07;15!UBERON:0002113;3.39e-07;24!UBERON:0011143;3.39e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.94e-12,15;UBERON:0009773,2.94e-12,15;UBERON:0001231,2.94e-12,15;UBERON:0001285,2.94e-12,15;UBERON:0007684,2.94e-12,15;UBERON:0004208,2.94e-12,15;UBERON:0004810,2.62e-11,10;UBERON:0006555,2.78e-11,16;UBERON:0004819,2.78e-11,16;UBERON:0001225,1.28e-08,12;UBERON:0008987,1.28e-08,12;UBERON:0011135,1.98e-08,5;UBERON:0002216,1.98e-08,5;UBERON:0011134,1.98e-08,5;UBERON:0002209,1.98e-08,5;UBERON:0002213,1.98e-08,5;UBERON:0005856,1.98e-08,5;UBERON:0005866,1.98e-08,5;UBERON:0005863,1.98e-08,5;UBERON:0007844,1.98e-08,5;UBERON:0011138,1.98e-08,5;UBERON:0001130,1.98e-08,5;UBERON:0001066,1.98e-08,5;UBERON:0001468,1.98e-08,5;UBERON:0000353,2.78e-08,15;UBERON:0001851,6.30e-08,15;UBERON:0003104,2.41e-07,160;UBERON:0009142,2.41e-07,160 | |||
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| |||
|short_description=p2@UQCC | |||
}} |
Revision as of 08:13, 12 September 2013
Short description: | p2@UQCC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_UQCC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000472559_5end |
EntrezGene: | UQCC |
HGNC: | 15891 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 2.94e-12 | 15 |
kidney cell | 5.02e-12 | 17 |
kidney epithelial cell | 5.02e-12 | 17 |
kidney tubule cell | 2.62e-11 | 10 |
nephron tubule epithelial cell | 2.62e-11 | 10 |
kidney cortical cell | 1.28e-08 | 12 |
renal cortical epithelial cell | 1.28e-08 | 12 |
epithelial cell | 1.92e-08 | 253 |
mesothelial cell | 2.83e-08 | 19 |
embryonic cell | 7.44e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.94e-12 | 15 |
renal tubule | 2.94e-12 | 15 |
nephron tubule | 2.94e-12 | 15 |
nephron | 2.94e-12 | 15 |
uriniferous tubule | 2.94e-12 | 15 |
nephrogenic mesenchyme | 2.94e-12 | 15 |
nephron tubule epithelium | 2.62e-11 | 10 |
excretory tube | 2.78e-11 | 16 |
kidney epithelium | 2.78e-11 | 16 |
cortex of kidney | 1.28e-08 | 12 |
renal parenchyma | 1.28e-08 | 12 |
intervertebral cartilage | 1.98e-08 | 5 |
symphysis | 1.98e-08 | 5 |
nonsynovial joint | 1.98e-08 | 5 |
fibrous joint | 1.98e-08 | 5 |
cartilaginous joint | 1.98e-08 | 5 |
developing mesenchymal condensation | 1.98e-08 | 5 |
pre-cartilage condensation | 1.98e-08 | 5 |
cartilaginous condensation | 1.98e-08 | 5 |
cartilage element | 1.98e-08 | 5 |
post-cranial axial skeletal system | 1.98e-08 | 5 |
vertebral column | 1.98e-08 | 5 |
intervertebral disk | 1.98e-08 | 5 |
intervertebral joint | 1.98e-08 | 5 |
parenchyma | 2.78e-08 | 15 |
cortex | 6.30e-08 | 15 |
mesenchyme | 2.41e-07 | 160 |
entire embryonic mesenchyme | 2.41e-07 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.