FFCP PHASE1:Hg19::chr22:18593507..18593556,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51807|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12410|TSSclassifier=S|UniProt=Q9NY65|association_with_transcript=-2bp_to_ENST00000330423,uc002znu.1,uc002znv.1_5end|coexpression_cluster_id=C2070|description=CAGE_peak_3_at_TUBA8_5end|id=chr22:18593507..18593556,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000097;4.92e-10;5|ontology_enrichment_celltype_v019_2=CL:0000097,5.20e-10,5;CL:0002028,5.20e-10,5|ontology_enrichment_development_v019=UBERON:0006601;9.08e-09;82!UBERON:0006215;2.99e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.22e-52!115;UBERON:0001049!5.77e-24!57;UBERON:0005068!5.77e-24!57;UBERON:0006241!5.77e-24!57;UBERON:0007135!5.77e-24!57;UBERON:0003075!5.61e-21!86;UBERON:0007284!5.61e-21!86;UBERON:0002616!2.12e-20!59;UBERON:0002346!5.38e-20!90;UBERON:0003080!1.28e-19!42;UBERON:0002780!6.14e-19!41;UBERON:0001890!6.14e-19!41;UBERON:0006240!6.14e-19!41;UBERON:0005743!6.86e-19!86;UBERON:0000073!6.00e-18!94;UBERON:0001016!6.00e-18!94;UBERON:0000955!1.31e-17!69;UBERON:0006238!1.31e-17!69;UBERON:0001017!6.64e-17!82;UBERON:0001869!8.50e-16!32;UBERON:0001893!1.21e-15!34;UBERON:0002020!1.39e-15!34;UBERON:0003528!1.39e-15!34;UBERON:0002791!6.59e-15!33;UBERON:0002619!6.23e-14!22;UBERON:0003056!7.39e-14!61;UBERON:0000025!2.23e-13!194;UBERON:0000178!2.98e-13!15;UBERON:0000179!2.98e-13!15;UBERON:0000463!2.98e-13!15;UBERON:0001950!1.20e-12!20;UBERON:0000956!1.83e-11!25;UBERON:0000203!1.83e-11!25;UBERON:0000033!2.70e-11!123;UBERON:0004111!3.22e-11!241;UBERON:0000153!3.55e-11!129;UBERON:0007811!3.55e-11!129;UBERON:0004121!1.23e-10!169;UBERON:0000924!2.33e-10!173;UBERON:0006601!2.33e-10!173;UBERON:0000477!2.27e-08!286;UBERON:0000483!3.95e-08!309;UBERON:0000119!4.66e-08!312|ontology_enrichment_uberon_v019=UBERON:0000178;3.44e-14;15!UBERON:0000179;3.44e-14;15!UBERON:0000463;3.44e-14;15!UBERON:0007023;3.49e-13;114!UBERON:0000073;8.81e-13;53!UBERON:0002616;8.81e-13;53!UBERON:0002619;7.78e-12;22!UBERON:0001893;1.37e-11;34!UBERON:0003528;1.85e-11;34!UBERON:0002020;1.85e-11;34!UBERON:0001950;1.97e-11;20!UBERON:0001869;1.05e-10;32!UBERON:0002780;1.36e-10;41!UBERON:0001890;1.36e-10;41!UBERON:0000956;4.49e-10;25!UBERON:0000203;4.49e-10;25!UBERON:0000200;4.86e-10;6!UBERON:0002791;8.55e-10;32!UBERON:0000955;2.67e-09;68!UBERON:0001017;2.37e-07;75!UBERON:0002680;4.74e-07;9!UBERON:0001895;4.74e-07;9!UBERON:0004151;5.24e-07;3!UBERON:0003978;5.96e-07;3!UBERON:0000946;5.96e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.95e-46,114;UBERON:0000073,2.01e-21,53;UBERON:0002616,2.01e-21,53;UBERON:0001049,7.72e-20,56;UBERON:0005068,7.72e-20,56;UBERON:0006241,7.72e-20,56;UBERON:0007135,7.72e-20,56;UBERON:0000955,4.30e-17,68;UBERON:0006238,4.30e-17,68;UBERON:0003075,1.06e-16,82;UBERON:0007284,1.06e-16,82;UBERON:0002780,4.34e-16,41;UBERON:0001890,4.34e-16,41;UBERON:0003080,4.34e-16,41;UBERON:0006240,4.34e-16,41;UBERON:0002346,1.72e-15,86;UBERON:0000178,3.02e-14,15;UBERON:0000179,3.02e-14,15;UBERON:0000463,3.02e-14,15;UBERON:0001017,3.18e-14,81;UBERON:0010314,1.99e-13,132;UBERON:0010371,3.00e-13,104;UBERON:0001893,3.90e-13,34;UBERON:0003528,4.63e-13,34;UBERON:0002020,4.63e-13,34;UBERON:0001016,6.36e-13,89;UBERON:0001869,9.85e-13,32;UBERON:0002619,5.95e-12,22;UBERON:0001950,1.60e-11,20;UBERON:0002791,3.57e-11,32;UBERON:0000956,3.56e-10,25;UBERON:0000203,3.56e-10,25;UBERON:0000200,4.45e-10,6;UBERON:0003056,6.06e-10,61;UBERON:0004121,8.28e-09,171;UBERON:0000924,8.28e-09,171;UBERON:0006601,8.28e-09,171;UBERON:0000025,3.68e-08,192;UBERON:0004151,4.40e-07,3;UBERON:0002680,4.55e-07,9;UBERON:0001895,4.55e-07,9;UBERON:0010092,4.55e-07,9;UBERON:0003978,5.69e-07,3;UBERON:0009751,5.69e-07,3;UBERON:0000946,5.69e-07,3;UBERON:0002523,5.69e-07,3;UBERON:0005983,5.69e-07,3;UBERON:0002165,5.69e-07,3;UBERON:0002062,5.69e-07,3;UBERON:0007280,5.69e-07,3|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,1.60468152070698,1.06730766284929,1.65292640758726,1.18009283054671,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,2.10707267820062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,15.5210204464789,0,0,0,0,0.797747763113191,0,0,0,14.1121309230361,0.860234595106124,1.04142150482278,0,0.838998872419812,0,1.8809546988313,0.258416759169329,0,0,0,0,0,0.735326160691737,0.81014194788176,0.446498641420399,0.44905874525234,0.563057402416611,3.06633274931766,0.949265659568129,4.946447086121,0,0,0.436094052142534,0.496971951695318,0,0,0,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51807 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12410 | |||
|TSSclassifier=S | |||
|UniProt=Q9NY65 | |||
|association_with_transcript=-2bp_to_ENST00000330423,uc002znu.1,uc002znv.1_5end | |||
|coexpression_cluster_id=C2070 | |||
|description=CAGE_peak_3_at_TUBA8_5end | |||
|id=chr22:18593507..18593556,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;4.92e-10;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,5.20e-10,5;CL:0002028,5.20e-10,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.08e-09;82!UBERON:0006215;2.99e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.22e-52!115;UBERON:0001049!5.77e-24!57;UBERON:0005068!5.77e-24!57;UBERON:0006241!5.77e-24!57;UBERON:0007135!5.77e-24!57;UBERON:0003075!5.61e-21!86;UBERON:0007284!5.61e-21!86;UBERON:0002616!2.12e-20!59;UBERON:0002346!5.38e-20!90;UBERON:0003080!1.28e-19!42;UBERON:0002780!6.14e-19!41;UBERON:0001890!6.14e-19!41;UBERON:0006240!6.14e-19!41;UBERON:0005743!6.86e-19!86;UBERON:0000073!6.00e-18!94;UBERON:0001016!6.00e-18!94;UBERON:0000955!1.31e-17!69;UBERON:0006238!1.31e-17!69;UBERON:0001017!6.64e-17!82;UBERON:0001869!8.50e-16!32;UBERON:0001893!1.21e-15!34;UBERON:0002020!1.39e-15!34;UBERON:0003528!1.39e-15!34;UBERON:0002791!6.59e-15!33;UBERON:0002619!6.23e-14!22;UBERON:0003056!7.39e-14!61;UBERON:0000025!2.23e-13!194;UBERON:0000178!2.98e-13!15;UBERON:0000179!2.98e-13!15;UBERON:0000463!2.98e-13!15;UBERON:0001950!1.20e-12!20;UBERON:0000956!1.83e-11!25;UBERON:0000203!1.83e-11!25;UBERON:0000033!2.70e-11!123;UBERON:0004111!3.22e-11!241;UBERON:0000153!3.55e-11!129;UBERON:0007811!3.55e-11!129;UBERON:0004121!1.23e-10!169;UBERON:0000924!2.33e-10!173;UBERON:0006601!2.33e-10!173;UBERON:0000477!2.27e-08!286;UBERON:0000483!3.95e-08!309;UBERON:0000119!4.66e-08!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.44e-14;15!UBERON:0000179;3.44e-14;15!UBERON:0000463;3.44e-14;15!UBERON:0007023;3.49e-13;114!UBERON:0000073;8.81e-13;53!UBERON:0002616;8.81e-13;53!UBERON:0002619;7.78e-12;22!UBERON:0001893;1.37e-11;34!UBERON:0003528;1.85e-11;34!UBERON:0002020;1.85e-11;34!UBERON:0001950;1.97e-11;20!UBERON:0001869;1.05e-10;32!UBERON:0002780;1.36e-10;41!UBERON:0001890;1.36e-10;41!UBERON:0000956;4.49e-10;25!UBERON:0000203;4.49e-10;25!UBERON:0000200;4.86e-10;6!UBERON:0002791;8.55e-10;32!UBERON:0000955;2.67e-09;68!UBERON:0001017;2.37e-07;75!UBERON:0002680;4.74e-07;9!UBERON:0001895;4.74e-07;9!UBERON:0004151;5.24e-07;3!UBERON:0003978;5.96e-07;3!UBERON:0000946;5.96e-07;3 | |||
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| |||
|short_description=p3@TUBA8 | |||
}} |
Revision as of 10:57, 12 September 2013
Short description: | p3@TUBA8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TUBA8_5end |
Coexpression cluster: | C2070_testis_skeletal_diaphragm_left_throat_cord_tongue |
Association with transcript: | -2bp_to_ENST00000330423, uc002znu.1, uc002znv.1_5end |
EntrezGene: | TUBA8 |
HGNC: | 12410 |
UniProt: | Q9NY65 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 5.20e-10 | 5 |
basophil mast progenitor cell | 5.20e-10 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.