FFCP PHASE1:Mm9::chr10:75052083..75052088,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=23887|HGNC=|UniProt=Q8C7B4|association_with_transcript=-37bp_to_ENSMUST00000072217,NM_011820,uc007fqq.1,uc007fqr.1,uc007fqs.1,uc011xgp.1_5end|description=CAGE_peak_4_at_Ggt5_5end|id=chr10:75052083..75052088,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000680,2.48e-12,6;CL:0000187,2.48e-12,6;CL:0000056,2.48e-12,6;CL:0000192,2.51e-11,3;CL:0000359,2.51e-11,3;CL:0002539,2.51e-11,3;CL:0000514,2.51e-11,3;CL:0000222,1.17e-10,7;CL:0000355,2.02e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0001135,2.51e-11,3;UBERON:0004237,2.51e-11,3;UBERON:0004695,2.51e-11,3;UBERON:0002111,2.51e-11,3;UBERON:0004178,2.51e-11,3;UBERON:0000947,1.00e-08,4;UBERON:0001637,1.00e-08,4;UBERON:0004573,1.00e-08,4;UBERON:0003509,1.00e-08,4;UBERON:0004571,1.00e-08,4;UBERON:0010191,1.00e-08,4;UBERON:0004572,1.00e-08,4;UBERON:0001134,2.02e-08,9;UBERON:0002036,2.02e-08,9;UBERON:0002385,2.02e-08,9;UBERON:0000486,2.02e-08,9;UBERON:0007503,2.02e-08,9;UBERON:0001015,2.02e-08,9;UBERON:0002329,2.02e-08,9;UBERON:0003082,2.02e-08,9;UBERON:0003059,2.02e-08,9;UBERON:0007282,2.02e-08,9;UBERON:0004290,2.02e-08,9;UBERON:0009618,2.02e-08,9;UBERON:0000383,1.24e-07,10;UBERON:0000055,3.73e-07,5;UBERON:0007500,3.73e-07,5;UBERON:0001981,3.73e-07,5;UBERON:0002049,3.73e-07,5;UBERON:0007798,3.73e-07,5;UBERON:0004537,3.73e-07,5;UBERON:0006965,3.73e-07,5;UBERON:0007524,5.47e-07,11;UBERON:0003077,5.47e-07,11;UBERON:0007285,5.47e-07,11|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.281577444303333,0.70219357896598,0,0,2.9104124088305,3.3219752919219,0,0,0,0,0.137114433605739,0,0.0850432901510698,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837063261473815,0,0,1.17646297606203,0.683045484958446,0,1.51076181570693,1.01376931219515,0.183546752161682,1.56478268869608,0,0.659058548203415,0.194429899074283,0,0,0,0.725362142011344,0,0,1.43266719969378,0.515672092277442,0,0,0,0,0,0,0,0,0.898800331555214,0.768436610643109,0.103689612308478,0,0,0,0,0.244981598429908,0,0,0,0.255374676170375,0,0.131886287730194,0.182975287204819,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0.511290967734173,0.779358013808606,2.12003744706204,0,0,5.09610479413291,0,0,0,0,0.11418387971906,0.258937883647172,0.742210695324124,0,0.608930956624282,0,0.904335843315735,0.352766121407114,0.376999773989026,0,0.289198713839823,0,0.161766849947409,0,0.484875253135222,0,0,0,0.255457055208591,0.11981512450592,0,0.127070227073065,0,0,0,0,0.255715457330331,0,0,0.101839363850316,0.248813941220186,0,0,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0.189106080167819,0.351902248327898,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0.23674473558521,0.196764231747404,0.308534225774757,0.465067889500816,0.804820204198858,0.233530684734339,0,0.164167464079095,0.405344047729279,0.292399974850665,0,0.536825675041487,0.210289948564127,0.102904612379284,0,0.264450566663544,0,0,0,0.403367049246685,0.22237804384487,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0,0,0.610953983535943,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0.405720242777006,0,0,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.369506380333209,0,0,0.169745085775188,0,0.335012514883631,0.238043640886014,0.195133647857799,0.315270288212382,0,0,0,0,0.144649058581512,0,0,0.491764273019036,0.275936746304732,0.160550589987792,0,0,0,0,0.390438744296638,0,0,0,0,0.809621403349789,0,0,0,0.567760340833074,1.06839362200353,0.651547837414304,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0.329098041204242,0.608929898229199,0.469343416127421,0,0,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0,0,0,0.619160603889667,0.555583582109135,0,0,0,0,0.979660166265606,0,0,0,0.406638934253697,0.216010681643603,0,0.436725127492355,0.134864346384821,0.247960367176008,0,0.518459893167171,0,0,0,0.330916980914195,0,0,0.337912250981556,0.938857909166032,0.13020438484395,0,0,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0,0.39736270956253,0.240390899039938,0.295379054349154,0,0,0,0,0.0962118416403295,0.116876902181569,0.680191150845634,0,0,0,0,0.187682475451182,1.64836461840539,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0,0.341467211508268,0,0.209613162627982,0,0,0,0,0,0,0.188626341386076,0,0.0640251524048693,0.287177344778066,0.476293691283074,0.231768651889711,0.192909220463705,0,0,0,0,0.476872379894642,0.436039249896986,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0.407412341537585,0.561142271657738,0.118635018124174,0.0985044823755635,0,0.464810523557898,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0.231867835620421|short_description=p4@Ggt5}} | ||
|EntrezGene=23887 | |||
|HGNC= | |||
|UniProt=Q8C7B4 | |||
|association_with_transcript=-37bp_to_ENSMUST00000072217,NM_011820,uc007fqq.1,uc007fqr.1,uc007fqs.1,uc011xgp.1_5end | |||
|description=CAGE_peak_4_at_Ggt5_5end | |||
|id=chr10:75052083..75052088,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.48e-12,6;CL:0000187,2.48e-12,6;CL:0000056,2.48e-12,6;CL:0000192,2.51e-11,3;CL:0000359,2.51e-11,3;CL:0002539,2.51e-11,3;CL:0000514,2.51e-11,3;CL:0000222,1.17e-10,7;CL:0000355,2.02e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,2.51e-11,3;UBERON:0004237,2.51e-11,3;UBERON:0004695,2.51e-11,3;UBERON:0002111,2.51e-11,3;UBERON:0004178,2.51e-11,3;UBERON:0000947,1.00e-08,4;UBERON:0001637,1.00e-08,4;UBERON:0004573,1.00e-08,4;UBERON:0003509,1.00e-08,4;UBERON:0004571,1.00e-08,4;UBERON:0010191,1.00e-08,4;UBERON:0004572,1.00e-08,4;UBERON:0001134,2.02e-08,9;UBERON:0002036,2.02e-08,9;UBERON:0002385,2.02e-08,9;UBERON:0000486,2.02e-08,9;UBERON:0007503,2.02e-08,9;UBERON:0001015,2.02e-08,9;UBERON:0002329,2.02e-08,9;UBERON:0003082,2.02e-08,9;UBERON:0003059,2.02e-08,9;UBERON:0007282,2.02e-08,9;UBERON:0004290,2.02e-08,9;UBERON:0009618,2.02e-08,9;UBERON:0000383,1.24e-07,10;UBERON:0000055,3.73e-07,5;UBERON:0007500,3.73e-07,5;UBERON:0001981,3.73e-07,5;UBERON:0002049,3.73e-07,5;UBERON:0007798,3.73e-07,5;UBERON:0004537,3.73e-07,5;UBERON:0006965,3.73e-07,5;UBERON:0007524,5.47e-07,11;UBERON:0003077,5.47e-07,11;UBERON:0007285,5.47e-07,11 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0.281577444303333,0.70219357896598,0,0,2.9104124088305,3.3219752919219,0,0,0,0,0.137114433605739,0,0.0850432901510698,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837063261473815,0,0,1.17646297606203,0.683045484958446,0,1.51076181570693,1.01376931219515,0.183546752161682,1.56478268869608,0,0.659058548203415,0.194429899074283,0,0,0,0.725362142011344,0,0,1.43266719969378,0.515672092277442,0,0,0,0,0,0,0,0,0.898800331555214,0.768436610643109,0.103689612308478,0,0,0,0,0.244981598429908,0,0,0,0.255374676170375,0,0.131886287730194,0.182975287204819,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0.511290967734173,0.779358013808606,2.12003744706204,0,0,5.09610479413291,0,0,0,0,0.11418387971906,0.258937883647172,0.742210695324124,0,0.608930956624282,0,0.904335843315735,0.352766121407114,0.376999773989026,0,0.289198713839823,0,0.161766849947409,0,0.484875253135222,0,0,0,0.255457055208591,0.11981512450592,0,0.127070227073065,0,0,0,0,0.255715457330331,0,0,0.101839363850316,0.248813941220186,0,0,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0.189106080167819,0.351902248327898,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0.23674473558521,0.196764231747404,0.308534225774757,0.465067889500816,0.804820204198858,0.233530684734339,0,0.164167464079095,0.405344047729279,0.292399974850665,0,0.536825675041487,0.210289948564127,0.102904612379284,0,0.264450566663544,0,0,0,0.403367049246685,0.22237804384487,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0,0,0.610953983535943,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0.405720242777006,0,0,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.369506380333209,0,0,0.169745085775188,0,0.335012514883631,0.238043640886014,0.195133647857799,0.315270288212382,0,0,0,0,0.144649058581512,0,0,0.491764273019036,0.275936746304732,0.160550589987792,0,0,0,0,0.390438744296638,0,0,0,0,0.809621403349789,0,0,0,0.567760340833074,1.06839362200353,0.651547837414304,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0.329098041204242,0.608929898229199,0.469343416127421,0,0,0.16488625294148,0,0.0603129249281559,0.119372344003136,0,0,0,0,0.619160603889667,0.555583582109135,0,0,0,0,0.979660166265606,0,0,0,0.406638934253697,0.216010681643603,0,0.436725127492355,0.134864346384821,0.247960367176008,0,0.518459893167171,0,0,0,0.330916980914195,0,0,0.337912250981556,0.938857909166032,0.13020438484395,0,0,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0,0.39736270956253,0.240390899039938,0.295379054349154,0,0,0,0,0.0962118416403295,0.116876902181569,0.680191150845634,0,0,0,0,0.187682475451182,1.64836461840539,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0,0.341467211508268,0,0.209613162627982,0,0,0,0,0,0,0.188626341386076,0,0.0640251524048693,0.287177344778066,0.476293691283074,0.231768651889711,0.192909220463705,0,0,0,0,0.476872379894642,0.436039249896986,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0.407412341537585,0.561142271657738,0.118635018124174,0.0985044823755635,0,0.464810523557898,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0.231867835620421 | |||
|short_description=p4@Ggt5 | |||
}} |
Revision as of 17:21, 12 September 2013
Short description: | p4@Ggt5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ggt5_5end |
Coexpression cluster: | NA |
Association with transcript: | -37bp_to_ENSMUST00000072217, NM_011820, uc007fqq.1, uc007fqr.1, uc007fqs.1, uc011xgp.1_5end |
EntrezGene: | Ggt5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.48e-12 | 6 |
muscle cell | 2.48e-12 | 6 |
myoblast | 2.48e-12 | 6 |
smooth muscle cell | 2.51e-11 | 3 |
vascular associated smooth muscle cell | 2.51e-11 | 3 |
aortic smooth muscle cell | 2.51e-11 | 3 |
smooth muscle myoblast | 2.51e-11 | 3 |
mesodermal cell | 1.17e-10 | 7 |
multi-potent skeletal muscle stem cell | 2.02e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 2.51e-11 | 3 |
blood vessel smooth muscle | 2.51e-11 | 3 |
arterial system smooth muscle | 2.51e-11 | 3 |
artery smooth muscle tissue | 2.51e-11 | 3 |
aorta smooth muscle tissue | 2.51e-11 | 3 |
aorta | 1.00e-08 | 4 |
artery | 1.00e-08 | 4 |
systemic artery | 1.00e-08 | 4 |
arterial blood vessel | 1.00e-08 | 4 |
systemic arterial system | 1.00e-08 | 4 |
aortic system | 1.00e-08 | 4 |
arterial system | 1.00e-08 | 4 |
skeletal muscle tissue | 2.02e-08 | 9 |
striated muscle tissue | 2.02e-08 | 9 |
muscle tissue | 2.02e-08 | 9 |
multilaminar epithelium | 2.02e-08 | 9 |
epithelial vesicle | 2.02e-08 | 9 |
musculature | 2.02e-08 | 9 |
somite | 2.02e-08 | 9 |
myotome | 2.02e-08 | 9 |
presomitic mesoderm | 2.02e-08 | 9 |
presumptive segmental plate | 2.02e-08 | 9 |
dermomyotome | 2.02e-08 | 9 |
trunk paraxial mesoderm | 2.02e-08 | 9 |
musculature of body | 1.24e-07 | 10 |
vessel | 3.73e-07 | 5 |
epithelial tube open at both ends | 3.73e-07 | 5 |
blood vessel | 3.73e-07 | 5 |
vasculature | 3.73e-07 | 5 |
vascular system | 3.73e-07 | 5 |
blood vasculature | 3.73e-07 | 5 |
vascular cord | 3.73e-07 | 5 |
dense mesenchyme tissue | 5.47e-07 | 11 |
paraxial mesoderm | 5.47e-07 | 11 |
presumptive paraxial mesoderm | 5.47e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.