FFCP PHASE1:Mm9::chr11:100870843..100870852,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11975|HGNC=|MCL_coexpression_id=1|UniProt=A2A5A2,Q9Z1G4|association_with_transcript=42bp_to_ENSMUST00000168757_5end|description=CAGE_peak_2_at_Atp6v0a1_5end|id=chr11:100870843..100870852,+|ontology_enrichment_celltype=CL:0000117!2.96e-09!23;CL:0000337!2.96e-09!23;CL:0000221!2.18e-08!44;CL:0000133!2.18e-08!44;CL:0002319!3.79e-08!43;CL:0000540!4.73e-08!33;CL:0000047!4.73e-08!33;CL:0000031!4.73e-08!33;CL:0000404!4.73e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.30e-10,23;CL:0000337,4.30e-10,23;CL:0000221,4.73e-09,44;CL:0000133,4.73e-09,44;CL:0000540,8.05e-09,33;CL:0000047,8.05e-09,33;CL:0000031,8.05e-09,33;CL:0000404,8.05e-09,33;CL:0002319,8.99e-09,43;CL:0000393,5.97e-07,39;CL:0000211,5.97e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.24e-18!73;UBERON:0005743!2.24e-18!73;UBERON:0000073!4.34e-18!75;UBERON:0001016!4.34e-18!75;UBERON:0002346!4.97e-18!71;UBERON:0003075!4.97e-18!71;UBERON:0007284!4.97e-18!71;UBERON:0004121!1.21e-17!102;UBERON:0000924!1.21e-17!102;UBERON:0006601!1.21e-17!102;UBERON:0001049!1.43e-16!52;UBERON:0005068!1.43e-16!52;UBERON:0006241!1.43e-16!52;UBERON:0007135!1.43e-16!52;UBERON:0000033!4.62e-16!63;UBERON:0000955!6.83e-15!50;UBERON:0006238!6.83e-15!50;UBERON:0002616!2.77e-14!49;UBERON:0002020!3.02e-13!34;UBERON:0003056!3.00e-12!49;UBERON:0002791!1.85e-10!29;UBERON:0003528!1.85e-10!29;UBERON:0001893!1.85e-10!29;UBERON:0003080!2.21e-10!40;UBERON:0002780!7.78e-10!39;UBERON:0001890!7.78e-10!39;UBERON:0006240!7.78e-10!39;UBERON:0000025!2.84e-08!114;UBERON:0004111!4.10e-08!122;UBERON:0003076!1.39e-07!12;UBERON:0003057!1.39e-07!12;UBERON:0000956!3.16e-07!21;UBERON:0001869!3.16e-07!21;UBERON:0000203!3.16e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.70e-20,73;UBERON:0010314,3.48e-20,92;UBERON:0001016,8.63e-20,75;UBERON:0002346,9.85e-20,64;UBERON:0003075,9.85e-20,64;UBERON:0007284,9.85e-20,64;UBERON:0004121,7.34e-19,95;UBERON:0000924,7.34e-19,95;UBERON:0006601,7.34e-19,95;UBERON:0000073,8.76e-19,54;UBERON:0001049,4.10e-18,52;UBERON:0005068,4.10e-18,52;UBERON:0006241,4.10e-18,52;UBERON:0007135,4.10e-18,52;UBERON:0010371,7.08e-17,73;UBERON:0000955,7.00e-15,47;UBERON:0006238,7.00e-15,47;UBERON:0002020,1.30e-14,34;UBERON:0002616,3.41e-14,46;UBERON:0003056,7.12e-13,49;UBERON:0003528,2.29e-11,29;UBERON:0002791,2.29e-11,29;UBERON:0001893,2.29e-11,29;UBERON:0003080,5.75e-11,40;UBERON:0002780,2.42e-10,39;UBERON:0001890,2.42e-10,39;UBERON:0006240,2.42e-10,39;UBERON:0000025,6.09e-09,114;UBERON:0004111,8.72e-09,122;UBERON:0003076,1.10e-08,12;UBERON:0003057,1.10e-08,12;UBERON:0000956,1.33e-07,21;UBERON:0001869,1.33e-07,21;UBERON:0000203,1.33e-07,21|phase1_expression=1.60148847104794,1.04692622291808,0,1.81478526784098,0.500895729946347,0.16787927191189,0.233612640595526,0,0.281577444303333,0.234064526321993,0.171217968225505,0,0,0,0.999329285446988,0.404950534779652,2.09868563438444,1.26184866143295,1.7824876368746,0.84877930359606,1.44573593256819,0.794327609607082,1.82839852397255,1.27993938234725,1.14704640533585,0.57423196411502,1.29228598847722,0.215471232685889,0.380046838912748,0.756090389279792,0,1.27006134691926,1.23012957516914,0,0.288851619751275,0,0.408338712524738,2.09265815368454,2.3440060335714,1.0470474879476,2.94115744015507,1.36609096991689,0.485510353031154,0.251793635951155,0.608261587317087,1.65192076945513,2.34717403304412,1.52617609466313,1.09843091367236,1.74986909166855,0.699932108126813,0,2.85230430298152,0.725362142011344,0,0.514518872071894,0.286533439938757,1.03134418455488,2.22548106945558,2.11596391708813,4.43681982454325,1.69422266034566,0,7.19919773825119,6.92206453796882,4.2628806896766,2.39680088414724,1.92109152660777,1.97010263386108,1.62007125998029,1.26194976810829,5.42736870367227,3.09215957332259,1.22490799214954,2.1086003624012,0.919218786610021,1.10115880999389,5.74593021383345,4.45458946443106,3.56092976871523,3.47653045689157,3.12548022334056,9.21303896704557,1.12552522006336,4.27835093775068,2.65165726926301,6.12198227436143,5.03278503728312,1.06016670666458,0.831287161174641,4.05810284182349,0.860423876981386,0.679971333707751,0,0,0,0.280888840263504,0.681721290312231,0.259786004602869,1.41335829804136,1.69012103732017,1.28326477414318,2.54805239706646,0,0.432982082022428,0.253359865475099,0.505524445014783,0.5709193985953,0.776813650941515,2.22663208597237,0.867426633830679,0.304465478312141,1.38369298353635,0.60289056221049,2.3517741427141,0.879666139307728,2.71914464507811,0.578397427679647,2.65383165584962,1.61766849947409,0.883366073841574,1.93950101254089,0,3.80615036115011,5.86450779077674,0,1.31796636956512,0.599902730993408,0.889491589511453,4.79330046095433,2.28750301409313,2.26177833803156,3.65031072403781,7.41574826257959,4.57133698031032,4.2182728397617,1.62942982160506,1.11966273549084,1.26361379216837,0.420883711772948,0.780722657776222,1.14951052216736,2.16074555766419,2.56198190320716,3.40182495756639,3.84341160854549,3.93547243150861,3.621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| ||
|EntrezGene=11975 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=A2A5A2,Q9Z1G4 | |||
|association_with_transcript=42bp_to_ENSMUST00000168757_5end | |||
|description=CAGE_peak_2_at_Atp6v0a1_5end | |||
|id=chr11:100870843..100870852,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.96e-09!23;CL:0000337!2.96e-09!23;CL:0000221!2.18e-08!44;CL:0000133!2.18e-08!44;CL:0002319!3.79e-08!43;CL:0000540!4.73e-08!33;CL:0000047!4.73e-08!33;CL:0000031!4.73e-08!33;CL:0000404!4.73e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.30e-10,23;CL:0000337,4.30e-10,23;CL:0000221,4.73e-09,44;CL:0000133,4.73e-09,44;CL:0000540,8.05e-09,33;CL:0000047,8.05e-09,33;CL:0000031,8.05e-09,33;CL:0000404,8.05e-09,33;CL:0002319,8.99e-09,43;CL:0000393,5.97e-07,39;CL:0000211,5.97e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.24e-18!73;UBERON:0005743!2.24e-18!73;UBERON:0000073!4.34e-18!75;UBERON:0001016!4.34e-18!75;UBERON:0002346!4.97e-18!71;UBERON:0003075!4.97e-18!71;UBERON:0007284!4.97e-18!71;UBERON:0004121!1.21e-17!102;UBERON:0000924!1.21e-17!102;UBERON:0006601!1.21e-17!102;UBERON:0001049!1.43e-16!52;UBERON:0005068!1.43e-16!52;UBERON:0006241!1.43e-16!52;UBERON:0007135!1.43e-16!52;UBERON:0000033!4.62e-16!63;UBERON:0000955!6.83e-15!50;UBERON:0006238!6.83e-15!50;UBERON:0002616!2.77e-14!49;UBERON:0002020!3.02e-13!34;UBERON:0003056!3.00e-12!49;UBERON:0002791!1.85e-10!29;UBERON:0003528!1.85e-10!29;UBERON:0001893!1.85e-10!29;UBERON:0003080!2.21e-10!40;UBERON:0002780!7.78e-10!39;UBERON:0001890!7.78e-10!39;UBERON:0006240!7.78e-10!39;UBERON:0000025!2.84e-08!114;UBERON:0004111!4.10e-08!122;UBERON:0003076!1.39e-07!12;UBERON:0003057!1.39e-07!12;UBERON:0000956!3.16e-07!21;UBERON:0001869!3.16e-07!21;UBERON:0000203!3.16e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.70e-20,73;UBERON:0010314,3.48e-20,92;UBERON:0001016,8.63e-20,75;UBERON:0002346,9.85e-20,64;UBERON:0003075,9.85e-20,64;UBERON:0007284,9.85e-20,64;UBERON:0004121,7.34e-19,95;UBERON:0000924,7.34e-19,95;UBERON:0006601,7.34e-19,95;UBERON:0000073,8.76e-19,54;UBERON:0001049,4.10e-18,52;UBERON:0005068,4.10e-18,52;UBERON:0006241,4.10e-18,52;UBERON:0007135,4.10e-18,52;UBERON:0010371,7.08e-17,73;UBERON:0000955,7.00e-15,47;UBERON:0006238,7.00e-15,47;UBERON:0002020,1.30e-14,34;UBERON:0002616,3.41e-14,46;UBERON:0003056,7.12e-13,49;UBERON:0003528,2.29e-11,29;UBERON:0002791,2.29e-11,29;UBERON:0001893,2.29e-11,29;UBERON:0003080,5.75e-11,40;UBERON:0002780,2.42e-10,39;UBERON:0001890,2.42e-10,39;UBERON:0006240,2.42e-10,39;UBERON:0000025,6.09e-09,114;UBERON:0004111,8.72e-09,122;UBERON:0003076,1.10e-08,12;UBERON:0003057,1.10e-08,12;UBERON:0000956,1.33e-07,21;UBERON:0001869,1.33e-07,21;UBERON:0000203,1.33e-07,21 | |||
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| |||
|short_description=p2@Atp6v0a1 | |||
}} |
Revision as of 18:13, 12 September 2013
Short description: | p2@Atp6v0a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Atp6v0a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 42bp_to_ENSMUST00000168757_5end |
EntrezGene: | Atp6v0a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.30e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.30e-10 | 23 |
ectodermal cell | 4.73e-09 | 44 |
neurectodermal cell | 4.73e-09 | 44 |
neuron | 8.05e-09 | 33 |
neuronal stem cell | 8.05e-09 | 33 |
neuroblast | 8.05e-09 | 33 |
electrically signaling cell | 8.05e-09 | 33 |
neural cell | 8.99e-09 | 43 |
electrically responsive cell | 5.97e-07 | 39 |
electrically active cell | 5.97e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.70e-20 | 73 |
structure with developmental contribution from neural crest | 3.48e-20 | 92 |
nervous system | 8.63e-20 | 75 |
neurectoderm | 9.85e-20 | 64 |
neural plate | 9.85e-20 | 64 |
presumptive neural plate | 9.85e-20 | 64 |
ectoderm-derived structure | 7.34e-19 | 95 |
ectoderm | 7.34e-19 | 95 |
presumptive ectoderm | 7.34e-19 | 95 |
regional part of nervous system | 8.76e-19 | 54 |
neural tube | 4.10e-18 | 52 |
neural rod | 4.10e-18 | 52 |
future spinal cord | 4.10e-18 | 52 |
neural keel | 4.10e-18 | 52 |
ecto-epithelium | 7.08e-17 | 73 |
brain | 7.00e-15 | 47 |
future brain | 7.00e-15 | 47 |
gray matter | 1.30e-14 | 34 |
regional part of brain | 3.41e-14 | 46 |
pre-chordal neural plate | 7.12e-13 | 49 |
brain grey matter | 2.29e-11 | 29 |
regional part of telencephalon | 2.29e-11 | 29 |
telencephalon | 2.29e-11 | 29 |
anterior neural tube | 5.75e-11 | 40 |
regional part of forebrain | 2.42e-10 | 39 |
forebrain | 2.42e-10 | 39 |
future forebrain | 2.42e-10 | 39 |
tube | 6.09e-09 | 114 |
anatomical conduit | 8.72e-09 | 122 |
posterior neural tube | 1.10e-08 | 12 |
chordal neural plate | 1.10e-08 | 12 |
cerebral cortex | 1.33e-07 | 21 |
cerebral hemisphere | 1.33e-07 | 21 |
pallium | 1.33e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.