FFCP PHASE1:Mm9::chr11:115489439..115489478,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67283|HGNC=|UniProt=Q9DAM5,A2A9V2,A2A9V5|association_with_transcript=0bp_to_ENSMUST00000021089,ENSMUST00000155709,uc007mig.1,uc007mih.1_5end|description=CAGE_peak_2_at_Slc25a19_5end|id=chr11:115489439..115489478,-|ontology_enrichment_celltype=CL:0002319!3.99e-08!43;CL:0000221!5.24e-08!44;CL:0000133!5.24e-08!44|ontology_enrichment_celltype_v019_2=CL:0002319,3.98e-08,43;CL:0000221,5.23e-08,44;CL:0000133,5.23e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.94e-16!75;UBERON:0001016!1.94e-16!75;UBERON:0001017!3.42e-16!73;UBERON:0005743!3.42e-16!73;UBERON:0007811!3.00e-13!86;UBERON:0004121!3.62e-13!102;UBERON:0000924!3.62e-13!102;UBERON:0006601!3.62e-13!102;UBERON:0000033!5.02e-12!63;UBERON:0000955!1.57e-11!50;UBERON:0006238!1.57e-11!50;UBERON:0000153!3.80e-11!94;UBERON:0002616!5.88e-11!49;UBERON:0001049!7.27e-11!52;UBERON:0005068!7.27e-11!52;UBERON:0006241!7.27e-11!52;UBERON:0007135!7.27e-11!52;UBERON:0002346!1.88e-10!71;UBERON:0003075!1.88e-10!71;UBERON:0007284!1.88e-10!71;UBERON:0002020!5.08e-09!34;UBERON:0002791!4.43e-08!29;UBERON:0003528!4.43e-08!29;UBERON:0001893!4.43e-08!29;UBERON:0003056!2.86e-07!49;UBERON:0003080!6.05e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.93e-16,75;UBERON:0001017,3.41e-16,73;UBERON:0004121,1.66e-14,95;UBERON:0000924,1.66e-14,95;UBERON:0006601,1.66e-14,95;UBERON:0010314,8.84e-14,92;UBERON:0002346,5.11e-12,64;UBERON:0003075,5.11e-12,64;UBERON:0007284,5.11e-12,64;UBERON:0000073,5.29e-12,54;UBERON:0001049,7.26e-11,52;UBERON:0005068,7.26e-11,52;UBERON:0006241,7.26e-11,52;UBERON:0007135,7.26e-11,52;UBERON:0000955,5.23e-10,47;UBERON:0006238,5.23e-10,47;UBERON:0010371,1.00e-09,73;UBERON:0002616,1.85e-09,46;UBERON:0002020,5.08e-09,34;UBERON:0003528,4.43e-08,29;UBERON:0002791,4.43e-08,29;UBERON:0001893,4.43e-08,29;UBERON:0003056,2.86e-07,49;UBERON:0003080,6.05e-07,40|phase1_expression=4.16387002472464,1.39590163055744,0.909998478779072,1.51232105653415,0.500895729946347,1.6787927191189,2.10251376535973,5.81054955487093,2.39340827657833,0.70219357896598,7.70480857014772,7.25926646857561,7.53283211697305,6.8187913886818,3.99731714178795,1.82227740650843,2.79824751251259,6.30924330716475,4.66189074259512,4.2438965179803,6.29320347117916,2.6808556824239,3.6567970479451,1.11994695955385,1.14704640533585,1.14846392823004,2.15380998079537,1.939241094173,1.52018735565099,1.00812051903972,1.99557459589774,6.98533740805594,4.30545351309199,15.8481681015439,3.17736781726402,3.49092755252834,2.85837098767317,1.67412652294763,0.7813353445238,1.0470474879476,2.35292595212406,1.36609096991689,0.971020706062307,2.14024590558481,2.33166941804883,2.75320128242522,4.69434806608824,5.88667922227206,2.85592037554813,2.91644848611425,3.77963338388479,11.5002051491977,4.36234775750115,6.5282592781021,4.03312558970957,1.28629718017973,3.43840127926508,2.06268836910977,5.46254444320914,5.28990979272033,2.53532561402472,3.38844532069132,3.55717918444456,4.94944844504769,5.93319817540185,4.9733608046227,5.99200221036809,8.4528027170742,3.7328260431052,2.29510095163874,3.36519938162211,7.7125765789027,8.1721360152097,4.16468717330844,4.12135525378416,4.5960939330501,9.91042928994498,8.04430229936683,7.52672012955593,4.74790635828698,5.03182039813253,4.68822033501084,8.93385596804419,7.87867654044352,9.32069311438542,4.12480019663135,4.27115042397309,3.16879057903011,3.86203585999239,4.53429360640713,3.76823835312181,0,0,2.69851595818909,2.59910566979068,0.448026887097336,3.37066608316204,1.36344258062446,1.81850203222008,1.41335829804136,3.23939865486365,1.28326477414318,5.09610479413291,0,0.865964164044856,0.760079596425296,1.51657333504435,3.08296475241462,4.14300613835475,2.67195850316685,2.77576522825817,2.43572382649713,2.53677046981664,4.37095657602605,1.99900802130698,4.52399728786832,3.21353458054686,6.07317299063629,0,3.07357014900077,3.75430581382669,2.90925151881133,1.86391761218122,12.8823550685081,10.8912287542997,2.55457055208591,2.75574786363617,2.99951365496704,4.06624726633807,7.04016005202667,5.49000723382352,5.52879149296603,9.21268897019065,9.2057564638919,6.44142938134636,8.4365456795234,2.85150218780886,2.61254638281195,2.27450482590307,5.47148825304832,2.60240885925407,2.75882525320168,3.42118046630164,4.21973489940002,5.03470093719826,3.58718416797579,3.09215691047105,10.3481348295606,3.01795190105979,2.45837904218165,2.11141348996739,2.41115305670332,2.22437799380478,3.1342694986995,2.26360350048738,1.79130840136644,0,4.37491442095016,3.6941254921427,4.55676699578104,4.45599513964083,3.24111710629827,5.91861838963026,6.49321964766433,5.24508183817086,7.90615412151387,5.36546802799238,5.3712057488898,4.27855609775049,5.25335885053105,4.62092214411378,6.28659945928929,5.48875288227627,5.90508242545636,10.0939175310781,3.39585220851639,1.32167513193519,3.96675849995316,2.34617075588757,2.78684006232526,2.70621668776396,2.21851877085677,2.2237804384487,2.09248188723815,1.89811624617805,2.964581185032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| ||
|EntrezGene=67283 | |||
|HGNC= | |||
|UniProt=Q9DAM5,A2A9V2,A2A9V5 | |||
|association_with_transcript=0bp_to_ENSMUST00000021089,ENSMUST00000155709,uc007mig.1,uc007mih.1_5end | |||
|description=CAGE_peak_2_at_Slc25a19_5end | |||
|id=chr11:115489439..115489478,- | |||
|ontology_enrichment_celltype=CL:0002319!3.99e-08!43;CL:0000221!5.24e-08!44;CL:0000133!5.24e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.98e-08,43;CL:0000221,5.23e-08,44;CL:0000133,5.23e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.94e-16!75;UBERON:0001016!1.94e-16!75;UBERON:0001017!3.42e-16!73;UBERON:0005743!3.42e-16!73;UBERON:0007811!3.00e-13!86;UBERON:0004121!3.62e-13!102;UBERON:0000924!3.62e-13!102;UBERON:0006601!3.62e-13!102;UBERON:0000033!5.02e-12!63;UBERON:0000955!1.57e-11!50;UBERON:0006238!1.57e-11!50;UBERON:0000153!3.80e-11!94;UBERON:0002616!5.88e-11!49;UBERON:0001049!7.27e-11!52;UBERON:0005068!7.27e-11!52;UBERON:0006241!7.27e-11!52;UBERON:0007135!7.27e-11!52;UBERON:0002346!1.88e-10!71;UBERON:0003075!1.88e-10!71;UBERON:0007284!1.88e-10!71;UBERON:0002020!5.08e-09!34;UBERON:0002791!4.43e-08!29;UBERON:0003528!4.43e-08!29;UBERON:0001893!4.43e-08!29;UBERON:0003056!2.86e-07!49;UBERON:0003080!6.05e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.93e-16,75;UBERON:0001017,3.41e-16,73;UBERON:0004121,1.66e-14,95;UBERON:0000924,1.66e-14,95;UBERON:0006601,1.66e-14,95;UBERON:0010314,8.84e-14,92;UBERON:0002346,5.11e-12,64;UBERON:0003075,5.11e-12,64;UBERON:0007284,5.11e-12,64;UBERON:0000073,5.29e-12,54;UBERON:0001049,7.26e-11,52;UBERON:0005068,7.26e-11,52;UBERON:0006241,7.26e-11,52;UBERON:0007135,7.26e-11,52;UBERON:0000955,5.23e-10,47;UBERON:0006238,5.23e-10,47;UBERON:0010371,1.00e-09,73;UBERON:0002616,1.85e-09,46;UBERON:0002020,5.08e-09,34;UBERON:0003528,4.43e-08,29;UBERON:0002791,4.43e-08,29;UBERON:0001893,4.43e-08,29;UBERON:0003056,2.86e-07,49;UBERON:0003080,6.05e-07,40 | |||
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| |||
|short_description=p2@Slc25a19 | |||
}} |
Revision as of 18:46, 12 September 2013
Short description: | p2@Slc25a19 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc25a19_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000021089, ENSMUST00000155709, uc007mig.1, uc007mih.1_5end |
EntrezGene: | Slc25a19 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.98e-08 | 43 |
ectodermal cell | 5.23e-08 | 44 |
neurectodermal cell | 5.23e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.93e-16 | 75 |
central nervous system | 3.41e-16 | 73 |
ectoderm-derived structure | 1.66e-14 | 95 |
ectoderm | 1.66e-14 | 95 |
presumptive ectoderm | 1.66e-14 | 95 |
structure with developmental contribution from neural crest | 8.84e-14 | 92 |
neurectoderm | 5.11e-12 | 64 |
neural plate | 5.11e-12 | 64 |
presumptive neural plate | 5.11e-12 | 64 |
regional part of nervous system | 5.29e-12 | 54 |
neural tube | 7.26e-11 | 52 |
neural rod | 7.26e-11 | 52 |
future spinal cord | 7.26e-11 | 52 |
neural keel | 7.26e-11 | 52 |
brain | 5.23e-10 | 47 |
future brain | 5.23e-10 | 47 |
ecto-epithelium | 1.00e-09 | 73 |
regional part of brain | 1.85e-09 | 46 |
gray matter | 5.08e-09 | 34 |
brain grey matter | 4.43e-08 | 29 |
regional part of telencephalon | 4.43e-08 | 29 |
telencephalon | 4.43e-08 | 29 |
pre-chordal neural plate | 2.86e-07 | 49 |
anterior neural tube | 6.05e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.