FFCP PHASE1:Hg19::chr3:12225006..12225016,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6854|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=11495|TSSclassifier=W|UniProt=|association_with_transcript=133bp_to_BC040661_5end|coexpression_cluster_id=C16|description=CAGE_peak_13_at_SYN2_5end|id=chr3:12225006..12225016,+|ontology_enrichment_celltype=CL:0000242!1.45e-11!2|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001893!8.03e-73!34;UBERON:0001049!1.56e-72!57;UBERON:0005068!1.56e-72!57;UBERON:0006241!1.56e-72!57;UBERON:0007135!1.56e-72!57;UBERON:0001869!4.68e-71!32;UBERON:0002619!9.10e-69!22;UBERON:0002791!1.98e-68!33;UBERON:0002020!1.53e-66!34;UBERON:0003528!1.53e-66!34;UBERON:0002780!4.02e-65!41;UBERON:0001890!4.02e-65!41;UBERON:0006240!4.02e-65!41;UBERON:0002616!5.65e-65!59;UBERON:0003080!1.76e-63!42;UBERON:0000955!2.96e-62!69;UBERON:0006238!2.96e-62!69;UBERON:0000956!2.33e-60!25;UBERON:0000203!2.33e-60!25;UBERON:0001950!1.98e-59!20;UBERON:0001017!2.95e-59!82;UBERON:0005743!2.93e-56!86;UBERON:0000073!1.02e-53!94;UBERON:0001016!1.02e-53!94;UBERON:0003075!3.04e-46!86;UBERON:0007284!3.04e-46!86;UBERON:0002346!6.25e-44!90;UBERON:0003056!2.30e-42!61;UBERON:0007023!9.01e-36!115;UBERON:0000033!5.93e-35!123;UBERON:0000153!4.77e-33!129;UBERON:0007811!4.77e-33!129;UBERON:0004121!2.12e-31!169;UBERON:0000924!1.59e-30!173;UBERON:0006601!1.59e-30!173;UBERON:0001872!1.07e-25!5;UBERON:0000200!8.24e-22!6;UBERON:0000025!4.45e-17!194;UBERON:0000349!5.73e-17!5;UBERON:0002771!9.83e-17!3;UBERON:0001871!1.45e-16!7;UBERON:0002021!1.78e-16!5;UBERON:0004111!1.63e-12!241;UBERON:0000369!1.87e-12!4;UBERON:0002435!1.87e-12!4;UBERON:0000204!1.87e-12!4;UBERON:0010082!1.87e-12!4;UBERON:0000064!4.38e-12!219;UBERON:0001954!1.89e-11!2;UBERON:0003022!1.89e-11!2;UBERON:0002421!1.89e-11!2;UBERON:0002600!1.89e-11!2;UBERON:0000477!1.92e-11!286;UBERON:0003076!3.69e-11!15;UBERON:0003057!3.69e-11!15;UBERON:0000483!4.17e-11!309;UBERON:0000119!6.20e-11!312;UBERON:0000475!5.40e-10!365;UBERON:0004733!7.87e-10!12;UBERON:0002028!7.87e-10!12;UBERON:0007277!7.87e-10!12;UBERON:0002298!8.07e-10!8;UBERON:0002420!1.41e-09!9;UBERON:0007245!1.41e-09!9;UBERON:0010009!1.41e-09!9;UBERON:0010011!1.41e-09!9;UBERON:0000454!1.41e-09!9;UBERON:0002308!2.01e-09!9;UBERON:0000125!2.01e-09!9;UBERON:0004732!4.67e-09!13;UBERON:0005383!4.50e-08!3;UBERON:0005382!4.50e-08!3;UBERON:0000988!1.80e-07!3;UBERON:0009663!2.67e-07!7;UBERON:0001896!3.14e-07!3;UBERON:0005290!3.14e-07!3;UBERON:0010096!3.14e-07!3;UBERON:0001874!9.81e-07!1|ontology_enrichment_uberon_v019=UBERON:0002771;2.74e-50;2!UBERON:0002021;5.15e-21;5!UBERON:0001950;4.86e-20;20!UBERON:0002619;2.02e-18;22!UBERON:0000200;7.67e-18;6!UBERON:0000956;1.86e-16;25!UBERON:0000203;1.86e-16;25!UBERON:0001871;1.65e-15;6!UBERON:0001893;1.90e-14;34!UBERON:0002791;1.84e-13;32!UBERON:0001869;1.84e-13;32!UBERON:0003528;1.70e-11;34!UBERON:0002020;1.70e-11;34!UBERON:0002780;3.45e-07;41!UBERON:0001890;3.45e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002771,2.74e-50,2;UBERON:0002021,5.15e-21,5;UBERON:0001950,4.86e-20,20;UBERON:0002619,2.02e-18,22;UBERON:0000200,7.67e-18,6;UBERON:0000956,1.86e-16,25;UBERON:0000203,1.86e-16,25;UBERON:0001871,1.65e-15,6;UBERON:0002791,2.96e-13,32;UBERON:0001869,2.96e-13,32;UBERON:0003528,1.42e-12,34;UBERON:0002020,1.42e-12,34;UBERON:0001893,1.42e-12,34;UBERON:0002780,1.07e-10,41;UBERON:0001890,1.07e-10,41;UBERON:0003080,1.07e-10,41;UBERON:0006240,1.07e-10,41;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0003056,1.20e-07,61;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6854 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11495 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=133bp_to_BC040661_5end | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_13_at_SYN2_5end | |||
|id=chr3:12225006..12225016,+ | |||
|ontology_enrichment_celltype=CL:0000242!1.45e-11!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!8.03e-73!34;UBERON:0001049!1.56e-72!57;UBERON:0005068!1.56e-72!57;UBERON:0006241!1.56e-72!57;UBERON:0007135!1.56e-72!57;UBERON:0001869!4.68e-71!32;UBERON:0002619!9.10e-69!22;UBERON:0002791!1.98e-68!33;UBERON:0002020!1.53e-66!34;UBERON:0003528!1.53e-66!34;UBERON:0002780!4.02e-65!41;UBERON:0001890!4.02e-65!41;UBERON:0006240!4.02e-65!41;UBERON:0002616!5.65e-65!59;UBERON:0003080!1.76e-63!42;UBERON:0000955!2.96e-62!69;UBERON:0006238!2.96e-62!69;UBERON:0000956!2.33e-60!25;UBERON:0000203!2.33e-60!25;UBERON:0001950!1.98e-59!20;UBERON:0001017!2.95e-59!82;UBERON:0005743!2.93e-56!86;UBERON:0000073!1.02e-53!94;UBERON:0001016!1.02e-53!94;UBERON:0003075!3.04e-46!86;UBERON:0007284!3.04e-46!86;UBERON:0002346!6.25e-44!90;UBERON:0003056!2.30e-42!61;UBERON:0007023!9.01e-36!115;UBERON:0000033!5.93e-35!123;UBERON:0000153!4.77e-33!129;UBERON:0007811!4.77e-33!129;UBERON:0004121!2.12e-31!169;UBERON:0000924!1.59e-30!173;UBERON:0006601!1.59e-30!173;UBERON:0001872!1.07e-25!5;UBERON:0000200!8.24e-22!6;UBERON:0000025!4.45e-17!194;UBERON:0000349!5.73e-17!5;UBERON:0002771!9.83e-17!3;UBERON:0001871!1.45e-16!7;UBERON:0002021!1.78e-16!5;UBERON:0004111!1.63e-12!241;UBERON:0000369!1.87e-12!4;UBERON:0002435!1.87e-12!4;UBERON:0000204!1.87e-12!4;UBERON:0010082!1.87e-12!4;UBERON:0000064!4.38e-12!219;UBERON:0001954!1.89e-11!2;UBERON:0003022!1.89e-11!2;UBERON:0002421!1.89e-11!2;UBERON:0002600!1.89e-11!2;UBERON:0000477!1.92e-11!286;UBERON:0003076!3.69e-11!15;UBERON:0003057!3.69e-11!15;UBERON:0000483!4.17e-11!309;UBERON:0000119!6.20e-11!312;UBERON:0000475!5.40e-10!365;UBERON:0004733!7.87e-10!12;UBERON:0002028!7.87e-10!12;UBERON:0007277!7.87e-10!12;UBERON:0002298!8.07e-10!8;UBERON:0002420!1.41e-09!9;UBERON:0007245!1.41e-09!9;UBERON:0010009!1.41e-09!9;UBERON:0010011!1.41e-09!9;UBERON:0000454!1.41e-09!9;UBERON:0002308!2.01e-09!9;UBERON:0000125!2.01e-09!9;UBERON:0004732!4.67e-09!13;UBERON:0005383!4.50e-08!3;UBERON:0005382!4.50e-08!3;UBERON:0000988!1.80e-07!3;UBERON:0009663!2.67e-07!7;UBERON:0001896!3.14e-07!3;UBERON:0005290!3.14e-07!3;UBERON:0010096!3.14e-07!3;UBERON:0001874!9.81e-07!1 | |||
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|short_description=p13@SYN2 | |||
}} |
Revision as of 21:09, 12 September 2013
Short description: | p13@SYN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_SYN2_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 133bp_to_BC040661_5end |
EntrezGene: | SYN2 |
HGNC: | 11495 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 2.74e-50 | 2 |
occipital lobe | 5.15e-21 | 5 |
neocortex | 4.86e-20 | 20 |
regional part of cerebral cortex | 2.02e-18 | 22 |
gyrus | 7.67e-18 | 6 |
cerebral cortex | 1.86e-16 | 25 |
pallium | 1.86e-16 | 25 |
temporal lobe | 1.65e-15 | 6 |
regional part of telencephalon | 2.96e-13 | 32 |
cerebral hemisphere | 2.96e-13 | 32 |
brain grey matter | 1.42e-12 | 34 |
gray matter | 1.42e-12 | 34 |
telencephalon | 1.42e-12 | 34 |
regional part of forebrain | 1.07e-10 | 41 |
forebrain | 1.07e-10 | 41 |
anterior neural tube | 1.07e-10 | 41 |
future forebrain | 1.07e-10 | 41 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
pre-chordal neural plate | 1.20e-07 | 61 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.