FFCP PHASE1:Mm9::chr13:100286492..100286534,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17755|HGNC=|MCL_coexpression_id=13|UniProt=P14873,Q3UF78,Q8CFR9,B2RQQ5|association_with_transcript=22bp_to_ENSMUST00000064762,NM_008634,uc007rpr.2,uc007rpt.2_5end|description=CAGE_peak_1_at_Mtap1b_5end|id=chr13:100286492..100286534,-|ontology_enrichment_celltype=CL:0000540!5.42e-16!33;CL:0000047!5.42e-16!33;CL:0000031!5.42e-16!33;CL:0000404!5.42e-16!33;CL:0000117!2.80e-15!23;CL:0000337!2.80e-15!23;CL:0002319!1.93e-14!43;CL:0000221!1.93e-14!44;CL:0000133!1.93e-14!44;CL:0000393!1.24e-12!39;CL:0000211!1.24e-12!39;CL:0000055!3.63e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.89e-16,33;CL:0000047,4.89e-16,33;CL:0000031,4.89e-16,33;CL:0000404,4.89e-16,33;CL:0000117,2.54e-15,23;CL:0000337,2.54e-15,23;CL:0002319,1.76e-14,43;CL:0000221,1.76e-14,44;CL:0000133,1.76e-14,44;CL:0000393,1.14e-12,39;CL:0000211,1.14e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.98e-30!75;UBERON:0001016!4.98e-30!75;UBERON:0001017!2.03e-29!73;UBERON:0005743!2.03e-29!73;UBERON:0004121!1.16e-27!102;UBERON:0000924!1.16e-27!102;UBERON:0006601!1.16e-27!102;UBERON:0002346!2.97e-26!71;UBERON:0003075!2.97e-26!71;UBERON:0007284!2.97e-26!71;UBERON:0001049!2.23e-23!52;UBERON:0005068!2.23e-23!52;UBERON:0006241!2.23e-23!52;UBERON:0007135!2.23e-23!52;UBERON:0000033!1.50e-22!63;UBERON:0000955!6.68e-22!50;UBERON:0006238!6.68e-22!50;UBERON:0002616!2.14e-21!49;UBERON:0003056!7.58e-20!49;UBERON:0002020!1.15e-18!34;UBERON:0003080!6.39e-18!40;UBERON:0002780!2.14e-17!39;UBERON:0001890!2.14e-17!39;UBERON:0006240!2.14e-17!39;UBERON:0002791!2.29e-15!29;UBERON:0003528!2.29e-15!29;UBERON:0001893!2.29e-15!29;UBERON:0000956!1.42e-10!21;UBERON:0001869!1.42e-10!21;UBERON:0000203!1.42e-10!21;UBERON:0000468!1.57e-09!333;UBERON:0007811!3.79e-09!86;UBERON:0000153!3.81e-09!94;UBERON:0002619!1.73e-08!17;UBERON:0000922!6.76e-07!328;UBERON:0000025!7.89e-07!114;UBERON:0004111!9.88e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.06e-30,75;UBERON:0001017,1.66e-29,73;UBERON:0004121,4.50e-27,95;UBERON:0000924,4.50e-27,95;UBERON:0006601,4.50e-27,95;UBERON:0002346,3.13e-26,64;UBERON:0003075,3.13e-26,64;UBERON:0007284,3.13e-26,64;UBERON:0000073,6.07e-25,54;UBERON:0010314,1.68e-23,92;UBERON:0001049,1.91e-23,52;UBERON:0005068,1.91e-23,52;UBERON:0006241,1.91e-23,52;UBERON:0007135,1.91e-23,52;UBERON:0010371,4.83e-22,73;UBERON:0003056,6.66e-20,49;UBERON:0000955,8.36e-20,47;UBERON:0006238,8.36e-20,47;UBERON:0002616,2.61e-19,46;UBERON:0002020,1.02e-18,34;UBERON:0003080,5.69e-18,40;UBERON:0002780,1.91e-17,39;UBERON:0001890,1.91e-17,39;UBERON:0006240,1.91e-17,39;UBERON:0003528,2.08e-15,29;UBERON:0002791,2.08e-15,29;UBERON:0001893,2.08e-15,29;UBERON:0000956,1.33e-10,21;UBERON:0001869,1.33e-10,21;UBERON:0000203,1.33e-10,21;UBERON:0002619,1.65e-08,17;UBERON:0000922,2.02e-07,320;UBERON:0000025,8.88e-07,114|phase1_expression=29.1470901730725,3.14077866875425,5.91499011206397,0,0,3.02182689441402,2.80335168714631,0,0,0,0.68487187290202,0.957265907944037,0,0,0,0.202475267389826,0,0,0.137114433605739,0,83.1723377677462,0,0.261199789138935,0.639969691173627,1.14704640533585,4.01962374880514,4.73838195774982,1.72376986148711,0.190023419456374,0.252030129759931,0,0,0,0,0.288851619751275,0,0.612508068787107,0,0,0,0,0,0,5.5394599909254,5.87986201073184,11.7469921383476,13.3006528539167,17.6600376668162,19.3323840806335,32.275363246331,19.8780718708015,61.8136026769378,0,0,0,9.77585856936598,17.1920063963254,13.9231464914909,475.848315941774,517.353177728048,486.782517892746,19.6529828600097,22.2323699027785,0.899899717281399,2.96659908770092,4.2628806896766,13.4820049733282,25.7426264565442,392.879941036822,261.236490671821,311.070617838694,355.921126567139,319.375910216033,339.177023026208,345.61876849176,262.896572970466,506.533052597188,570.890088578874,580.786302241857,451.578649188184,667.219384792374,490.179481693911,378.01378064787,326.402313818374,410.263295280735,683.538318298909,665.587607735806,510.920881007149,50.5850971465669,108.294045633024,12.4641730141721,0.860423876981386,0,1.61910957491345,0,0,20.7857741794993,7.83979483859066,5.19572009205738,6.71345191569646,36.3376023023836,8.98285341900225,20.3844191765317,7.11066703153331,4.32982082022428,6.08063677140237,2.02209778005913,10.6191008138726,3.36619248741323,42.4544517725399,37.6463159082515,37.1447883540812,38.9740190362739,44.7646242441289,55.0315149395098,17.0906564208359,7.41584903203122,38.6080282976164,0.884610551949874,18.6031877439521,6.40440403535141,5.81850303762267,0,171.276766251755,175.935233723302,3.57639877292028,0.11981512450592,0,0,306.321857582862,246.135324316421,400.586074535812,357.035153674936,298.419938704496,352.824099662133,304.040126988978,29.940772971993,20.9003710624956,63.9388578837197,43.1405804567272,46.5831185806479,69.2005334344753,97.0534879650832,92.532758151129,83.1406019629226,85.0675102691403,92.7647073141315,97.7898741393479,18.3232793992916,41.9815497972559,41.8763675510198,25.4267049615987,33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| ||
|EntrezGene=17755 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=P14873,Q3UF78,Q8CFR9,B2RQQ5 | |||
|association_with_transcript=22bp_to_ENSMUST00000064762,NM_008634,uc007rpr.2,uc007rpt.2_5end | |||
|description=CAGE_peak_1_at_Mtap1b_5end | |||
|id=chr13:100286492..100286534,- | |||
|ontology_enrichment_celltype=CL:0000540!5.42e-16!33;CL:0000047!5.42e-16!33;CL:0000031!5.42e-16!33;CL:0000404!5.42e-16!33;CL:0000117!2.80e-15!23;CL:0000337!2.80e-15!23;CL:0002319!1.93e-14!43;CL:0000221!1.93e-14!44;CL:0000133!1.93e-14!44;CL:0000393!1.24e-12!39;CL:0000211!1.24e-12!39;CL:0000055!3.63e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.89e-16,33;CL:0000047,4.89e-16,33;CL:0000031,4.89e-16,33;CL:0000404,4.89e-16,33;CL:0000117,2.54e-15,23;CL:0000337,2.54e-15,23;CL:0002319,1.76e-14,43;CL:0000221,1.76e-14,44;CL:0000133,1.76e-14,44;CL:0000393,1.14e-12,39;CL:0000211,1.14e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.98e-30!75;UBERON:0001016!4.98e-30!75;UBERON:0001017!2.03e-29!73;UBERON:0005743!2.03e-29!73;UBERON:0004121!1.16e-27!102;UBERON:0000924!1.16e-27!102;UBERON:0006601!1.16e-27!102;UBERON:0002346!2.97e-26!71;UBERON:0003075!2.97e-26!71;UBERON:0007284!2.97e-26!71;UBERON:0001049!2.23e-23!52;UBERON:0005068!2.23e-23!52;UBERON:0006241!2.23e-23!52;UBERON:0007135!2.23e-23!52;UBERON:0000033!1.50e-22!63;UBERON:0000955!6.68e-22!50;UBERON:0006238!6.68e-22!50;UBERON:0002616!2.14e-21!49;UBERON:0003056!7.58e-20!49;UBERON:0002020!1.15e-18!34;UBERON:0003080!6.39e-18!40;UBERON:0002780!2.14e-17!39;UBERON:0001890!2.14e-17!39;UBERON:0006240!2.14e-17!39;UBERON:0002791!2.29e-15!29;UBERON:0003528!2.29e-15!29;UBERON:0001893!2.29e-15!29;UBERON:0000956!1.42e-10!21;UBERON:0001869!1.42e-10!21;UBERON:0000203!1.42e-10!21;UBERON:0000468!1.57e-09!333;UBERON:0007811!3.79e-09!86;UBERON:0000153!3.81e-09!94;UBERON:0002619!1.73e-08!17;UBERON:0000922!6.76e-07!328;UBERON:0000025!7.89e-07!114;UBERON:0004111!9.88e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.06e-30,75;UBERON:0001017,1.66e-29,73;UBERON:0004121,4.50e-27,95;UBERON:0000924,4.50e-27,95;UBERON:0006601,4.50e-27,95;UBERON:0002346,3.13e-26,64;UBERON:0003075,3.13e-26,64;UBERON:0007284,3.13e-26,64;UBERON:0000073,6.07e-25,54;UBERON:0010314,1.68e-23,92;UBERON:0001049,1.91e-23,52;UBERON:0005068,1.91e-23,52;UBERON:0006241,1.91e-23,52;UBERON:0007135,1.91e-23,52;UBERON:0010371,4.83e-22,73;UBERON:0003056,6.66e-20,49;UBERON:0000955,8.36e-20,47;UBERON:0006238,8.36e-20,47;UBERON:0002616,2.61e-19,46;UBERON:0002020,1.02e-18,34;UBERON:0003080,5.69e-18,40;UBERON:0002780,1.91e-17,39;UBERON:0001890,1.91e-17,39;UBERON:0006240,1.91e-17,39;UBERON:0003528,2.08e-15,29;UBERON:0002791,2.08e-15,29;UBERON:0001893,2.08e-15,29;UBERON:0000956,1.33e-10,21;UBERON:0001869,1.33e-10,21;UBERON:0000203,1.33e-10,21;UBERON:0002619,1.65e-08,17;UBERON:0000922,2.02e-07,320;UBERON:0000025,8.88e-07,114 | |||
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| |||
|short_description=p1@Mtap1b | |||
}} |
Revision as of 23:42, 12 September 2013
Short description: | p1@Mtap1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mtap1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 22bp_to_ENSMUST00000064762, NM_008634, uc007rpr.2, uc007rpt.2_5end |
EntrezGene: | Mtap1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.89e-16 | 33 |
neuronal stem cell | 4.89e-16 | 33 |
neuroblast | 4.89e-16 | 33 |
electrically signaling cell | 4.89e-16 | 33 |
CNS neuron (sensu Vertebrata) | 2.54e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.54e-15 | 23 |
neural cell | 1.76e-14 | 43 |
ectodermal cell | 1.76e-14 | 44 |
neurectodermal cell | 1.76e-14 | 44 |
electrically responsive cell | 1.14e-12 | 39 |
electrically active cell | 1.14e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.06e-30 | 75 |
central nervous system | 1.66e-29 | 73 |
ectoderm-derived structure | 4.50e-27 | 95 |
ectoderm | 4.50e-27 | 95 |
presumptive ectoderm | 4.50e-27 | 95 |
neurectoderm | 3.13e-26 | 64 |
neural plate | 3.13e-26 | 64 |
presumptive neural plate | 3.13e-26 | 64 |
regional part of nervous system | 6.07e-25 | 54 |
structure with developmental contribution from neural crest | 1.68e-23 | 92 |
neural tube | 1.91e-23 | 52 |
neural rod | 1.91e-23 | 52 |
future spinal cord | 1.91e-23 | 52 |
neural keel | 1.91e-23 | 52 |
ecto-epithelium | 4.83e-22 | 73 |
pre-chordal neural plate | 6.66e-20 | 49 |
brain | 8.36e-20 | 47 |
future brain | 8.36e-20 | 47 |
regional part of brain | 2.61e-19 | 46 |
gray matter | 1.02e-18 | 34 |
anterior neural tube | 5.69e-18 | 40 |
regional part of forebrain | 1.91e-17 | 39 |
forebrain | 1.91e-17 | 39 |
future forebrain | 1.91e-17 | 39 |
brain grey matter | 2.08e-15 | 29 |
regional part of telencephalon | 2.08e-15 | 29 |
telencephalon | 2.08e-15 | 29 |
cerebral cortex | 1.33e-10 | 21 |
cerebral hemisphere | 1.33e-10 | 21 |
pallium | 1.33e-10 | 21 |
regional part of cerebral cortex | 1.65e-08 | 17 |
embryo | 2.02e-07 | 320 |
tube | 8.88e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.