FFCP PHASE1:Hg19::chr3:55515558..55515584,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7474|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12784|TSSclassifier=S|UniProt=|association_with_transcript=-137bp_to_ENST00000497027_5end|coexpression_cluster_id=C1516|description=CAGE_peak_18_at_WNT5A_5end|id=chr3:55515558..55515584,-|ontology_enrichment_celltype=CL:0000055!1.60e-13!180;CL:0002620!8.86e-13!23;CL:0000057!7.89e-09!75|ontology_enrichment_celltype_v019=CL:0000349;1.82e-28;19!CL:0002559;7.39e-14;5!CL:0000346;3.17e-13;3!CL:1000428;3.17e-13;3!CL:0002577;3.17e-13;3!CL:0000134;6.55e-11;55!CL:0000138;7.70e-11;6!CL:0002536;8.94e-09;2!CL:0000048;9.10e-09;58!CL:0000723;2.49e-08;61!CL:0002537;5.38e-08;5!CL:0002620;6.72e-08;23!CL:0000153;3.01e-07;9!CL:0000447;3.01e-07;9!CL:0000034;4.66e-07;69|ontology_enrichment_celltype_v019_2=CL:0000349,2.48e-28,19;CL:0002559,7.31e-14,5;CL:0000346,3.12e-13,3;CL:1000428,3.12e-13,3;CL:0002577,4.71e-13,3;CL:0000058,8.25e-11,6;CL:0000138,8.25e-11,6;CL:0002536,4.33e-09,2;CL:0002620,5.69e-08,23;CL:0002537,7.73e-08,5;CL:0000153,3.15e-07,9;CL:0000447,3.15e-07,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;2.70e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.65e-07,14|ontology_enrichment_uberon=UBERON:0003102!1.70e-12!95;UBERON:0005631!1.04e-10!14;UBERON:0000158!1.04e-10!14;UBERON:0000478!1.72e-10!24;UBERON:0002097!5.32e-10!40;UBERON:0002199!1.22e-09!45;UBERON:0002416!1.22e-09!45;UBERON:0001737!2.27e-08!9;UBERON:0000914!2.66e-08!83;UBERON:0002329!2.66e-08!83;UBERON:0003077!2.66e-08!83;UBERON:0003059!2.66e-08!83;UBERON:0007282!2.66e-08!83;UBERON:0009618!2.66e-08!83;UBERON:0007285!2.66e-08!83|ontology_enrichment_uberon_v019=UBERON:0000478;5.48e-22;24!UBERON:0005631;4.41e-19;10!UBERON:0000158;4.41e-19;10!UBERON:0000305;2.82e-14;7!UBERON:0002073;7.39e-14;5!UBERON:0000412;3.17e-13;3!UBERON:0001992;3.17e-13;3!UBERON:0001987;4.96e-10;4!UBERON:0002097;1.11e-09;41!UBERON:0002118;5.38e-08;5!UBERON:0001003;9.91e-07;15!UBERON:0007376;9.91e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.20e-27,14;UBERON:0000158,3.20e-27,14;UBERON:0000478,7.00e-22,24;UBERON:0003124,1.43e-14,7;UBERON:0000305,2.61e-14,7;UBERON:0002073,7.31e-14,5;UBERON:0005086,7.31e-14,5;UBERON:0000412,3.12e-13,3;UBERON:0001992,3.12e-13,3;UBERON:0004871,1.73e-12,8;UBERON:0004923,2.60e-12,66;UBERON:0002097,4.97e-12,41;UBERON:0002199,1.91e-10,46;UBERON:0002416,1.91e-10,46;UBERON:0001987,6.66e-10,4;UBERON:0004340,6.66e-10,4;UBERON:0003102,3.15e-09,99;UBERON:0002118,5.15e-08,5|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,1.74753097704138,1.84636884759917,0.123766352960047,0,0,0,0,0,0.369363174230364,0.816002764977012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,1.50401373190767,2.02785126545153,0,1.45990461090791,0,0,0.43917392846563,0,0,0,0.649094787309367,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.469737994575059,0,0.140450806702248,0.61246251376468,0,0.413303124703062,2.37600571456411,5.68713937340681,0,0,0.673344455816265,0.250237039743928,0.554128230968366,0.438977620880838,1.83892677479412,2.25357088359895,0,0.717558542755448,3.63047560991565,0.847727604638247,0.900273288253207,2.67936576019941,1.8034837803194,1.67505170698431,0,0.0974370051611986,0.504867548488229,3.12969655383818,0.161646056818812,1.06502877754984,0.503760491138201,0.508681776931463,0,0,0,0,0,0,0,0,0,3.12899064659632,1.28648187638577,2.76269842704961,3.25057549622385,0.721879481669586,0.354920400119532,0.505754070234305,0.482022059766964,0.441175890929576,0.653638332277218,0.237270619111097,0.674156540800822,0.784885860501384,0.769494313892781,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0.514137463516618,0,0,0,0,0.1466765716419,0.387815147273333,0,0.845302752556,2.39344304926383,1.04007436911366,0,0,0.266422179016099,0.714889968290738,1.62786481617433,0.823240336780769,1.62868092146868,0.355391948742546,2.37585561880029,0.904318131178758,0,0.599837947092342,0,0,0,0.239624855491583,0,0,0.434343920002738,0.205476322550383,0.895304816199478,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0.271265023699736,1.03985430765404,1.78428988797162,1.10391690523754,0.702848489956279,0.300946099727719,0,0,0,0.184369168541703,1.47702144595741,0,0,0,0,0,1.21251028578504,3.32870879020994,2.11673205330776,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.410635780069046,0,0.348631135379878,0,0,0,0.459257792658427,0.728364672026868,0.393373244878272,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12784 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-137bp_to_ENST00000497027_5end | |||
|coexpression_cluster_id=C1516 | |||
|description=CAGE_peak_18_at_WNT5A_5end | |||
|id=chr3:55515558..55515584,- | |||
|ontology_enrichment_celltype=CL:0000055!1.60e-13!180;CL:0002620!8.86e-13!23;CL:0000057!7.89e-09!75 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.82e-28;19!CL:0002559;7.39e-14;5!CL:0000346;3.17e-13;3!CL:1000428;3.17e-13;3!CL:0002577;3.17e-13;3!CL:0000134;6.55e-11;55!CL:0000138;7.70e-11;6!CL:0002536;8.94e-09;2!CL:0000048;9.10e-09;58!CL:0000723;2.49e-08;61!CL:0002537;5.38e-08;5!CL:0002620;6.72e-08;23!CL:0000153;3.01e-07;9!CL:0000447;3.01e-07;9!CL:0000034;4.66e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.48e-28,19;CL:0002559,7.31e-14,5;CL:0000346,3.12e-13,3;CL:1000428,3.12e-13,3;CL:0002577,4.71e-13,3;CL:0000058,8.25e-11,6;CL:0000138,8.25e-11,6;CL:0002536,4.33e-09,2;CL:0002620,5.69e-08,23;CL:0002537,7.73e-08,5;CL:0000153,3.15e-07,9;CL:0000447,3.15e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.70e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.65e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.70e-12!95;UBERON:0005631!1.04e-10!14;UBERON:0000158!1.04e-10!14;UBERON:0000478!1.72e-10!24;UBERON:0002097!5.32e-10!40;UBERON:0002199!1.22e-09!45;UBERON:0002416!1.22e-09!45;UBERON:0001737!2.27e-08!9;UBERON:0000914!2.66e-08!83;UBERON:0002329!2.66e-08!83;UBERON:0003077!2.66e-08!83;UBERON:0003059!2.66e-08!83;UBERON:0007282!2.66e-08!83;UBERON:0009618!2.66e-08!83;UBERON:0007285!2.66e-08!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.48e-22;24!UBERON:0005631;4.41e-19;10!UBERON:0000158;4.41e-19;10!UBERON:0000305;2.82e-14;7!UBERON:0002073;7.39e-14;5!UBERON:0000412;3.17e-13;3!UBERON:0001992;3.17e-13;3!UBERON:0001987;4.96e-10;4!UBERON:0002097;1.11e-09;41!UBERON:0002118;5.38e-08;5!UBERON:0001003;9.91e-07;15!UBERON:0007376;9.91e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.20e-27,14;UBERON:0000158,3.20e-27,14;UBERON:0000478,7.00e-22,24;UBERON:0003124,1.43e-14,7;UBERON:0000305,2.61e-14,7;UBERON:0002073,7.31e-14,5;UBERON:0005086,7.31e-14,5;UBERON:0000412,3.12e-13,3;UBERON:0001992,3.12e-13,3;UBERON:0004871,1.73e-12,8;UBERON:0004923,2.60e-12,66;UBERON:0002097,4.97e-12,41;UBERON:0002199,1.91e-10,46;UBERON:0002416,1.91e-10,46;UBERON:0001987,6.66e-10,4;UBERON:0004340,6.66e-10,4;UBERON:0003102,3.15e-09,99;UBERON:0002118,5.15e-08,5 | |||
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| |||
|short_description=p18@WNT5A | |||
}} |
Revision as of 00:56, 13 September 2013
Short description: | p18@WNT5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_WNT5A_5end |
Coexpression cluster: | C1516_amniotic_Fibroblast_Hair_Amniotic_Placental_Chondrocyte_liposarcoma |
Association with transcript: | -137bp_to_ENST00000497027_5end |
EntrezGene: | WNT5A |
HGNC: | 12784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.48e-28 | 19 |
hair follicle cell | 7.31e-14 | 5 |
hair follicle dermal papilla cell | 3.12e-13 | 3 |
stem cell of epidermis | 3.12e-13 | 3 |
placental epithelial cell | 4.71e-13 | 3 |
chondroblast | 8.25e-11 | 6 |
chondrocyte | 8.25e-11 | 6 |
amniotic epithelial cell | 4.33e-09 | 2 |
skin fibroblast | 5.69e-08 | 23 |
amnion mesenchymal stem cell | 7.73e-08 | 5 |
GAG secreting cell | 3.15e-07 | 9 |
carbohydrate secreting cell | 3.15e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.20e-27 | 14 |
membranous layer | 3.20e-27 | 14 |
extraembryonic structure | 7.00e-22 | 24 |
chorion | 1.43e-14 | 7 |
amnion | 2.61e-14 | 7 |
hair follicle | 7.31e-14 | 5 |
hair follicle placode | 7.31e-14 | 5 |
dermal papilla | 3.12e-13 | 3 |
papillary layer of dermis | 3.12e-13 | 3 |
somatic layer of lateral plate mesoderm | 1.73e-12 | 8 |
organ component layer | 2.60e-12 | 66 |
skin of body | 4.97e-12 | 41 |
integument | 1.91e-10 | 46 |
integumental system | 1.91e-10 | 46 |
placenta | 6.66e-10 | 4 |
allantois | 6.66e-10 | 4 |
surface structure | 3.15e-09 | 99 |
right ovary | 5.15e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.65e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.