FFCP PHASE1:Hg19::chr4:109090075..109090095,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51176|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6551|TSSclassifier=S|UniProt=Q9UJU2,Q659G9|association_with_transcript=16bp_to_ENST00000379951,NM_001130713,NM_001130714,NM_016269_5end|coexpression_cluster_id=C28|description=CAGE_peak_2_at_LEF1_5end|id=chr4:109090075..109090095,-|ontology_enrichment_celltype=CL:0000791!3.65e-14!18;CL:0000789!3.65e-14!18;CL:0002420!3.65e-14!18;CL:0002419!3.65e-14!18;CL:0000790!3.65e-14!18;CL:0000084!1.31e-13!25;CL:0000827!1.31e-13!25;CL:0000625!2.03e-10!11;CL:0000542!1.39e-09!53;CL:0000051!1.39e-09!53;CL:0000838!3.98e-09!52|ontology_enrichment_celltype_v019=CL:0000791;1.66e-22;18!CL:0000789;1.66e-22;18!CL:0002419;1.66e-22;18!CL:0000084;2.17e-21;25!CL:0000625;5.82e-16;11!CL:0000624;7.39e-10;6!CL:0000542;4.01e-07;53|ontology_enrichment_celltype_v019_2=CL:0000791,1.71e-22,18;CL:0000789,1.71e-22,18;CL:0002420,1.71e-22,18;CL:0002419,1.71e-22,18;CL:0000790,1.71e-22,18;CL:0000084,2.23e-21,25;CL:0000827,2.23e-21,25;CL:0000625,6.07e-16,11;CL:0000542,1.09e-12,53;CL:0000051,1.09e-12,53;CL:0000838,5.46e-12,52;CL:0000624,7.30e-10,6|ontology_enrichment_development_v019=CL:0000790;1.66e-22;18!CL:0000051;4.01e-07;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.35e-23!115;UBERON:0001049!1.15e-14!57;UBERON:0005068!1.15e-14!57;UBERON:0006241!1.15e-14!57;UBERON:0007135!1.15e-14!57;UBERON:0002780!1.42e-11!41;UBERON:0001890!1.42e-11!41;UBERON:0006240!1.42e-11!41;UBERON:0001017!4.84e-11!82;UBERON:0003080!4.96e-11!42;UBERON:0002616!5.07e-11!59;UBERON:0002020!6.87e-11!34;UBERON:0003528!6.87e-11!34;UBERON:0000178!6.97e-11!15;UBERON:0000179!6.97e-11!15;UBERON:0000463!6.97e-11!15;UBERON:0001893!7.93e-11!34;UBERON:0002791!2.20e-10!33;UBERON:0005743!2.69e-10!86;UBERON:0001869!4.97e-10!32;UBERON:0000073!6.64e-10!94;UBERON:0001016!6.64e-10!94;UBERON:0003075!1.27e-09!86;UBERON:0007284!1.27e-09!86;UBERON:0000955!1.89e-09!69;UBERON:0006238!1.89e-09!69;UBERON:0001950!2.25e-09!20;UBERON:0002619!3.68e-09!22;UBERON:0002346!1.68e-08!90;UBERON:0000956!4.90e-08!25;UBERON:0000203!4.90e-08!25;UBERON:0003056!1.65e-07!61|ontology_enrichment_uberon_v019=UBERON:0000178;3.79e-12;15!UBERON:0000179;3.79e-12;15!UBERON:0000463;3.79e-12;15!UBERON:0001950;5.03e-12;20!UBERON:0002619;5.17e-12;22!UBERON:0001893;1.43e-11;34!UBERON:0002780;2.29e-11;41!UBERON:0001890;2.29e-11;41!UBERON:0002791;4.74e-11;32!UBERON:0001869;4.76e-11;32!UBERON:0003528;1.21e-10;34!UBERON:0002020;1.21e-10;34!UBERON:0000956;4.38e-10;25!UBERON:0000203;4.38e-10;25!UBERON:0000073;4.90e-10;53!UBERON:0002616;4.90e-10;53!UBERON:0002390;1.80e-09;32!UBERON:0004177;3.17e-07;5!UBERON:0005057;3.17e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.62e-17,114;UBERON:0001049,2.90e-17,56;UBERON:0005068,2.90e-17,56;UBERON:0006241,2.90e-17,56;UBERON:0007135,2.90e-17,56;UBERON:0000073,3.05e-16,53;UBERON:0002616,3.05e-16,53;UBERON:0002780,8.90e-15,41;UBERON:0001890,8.90e-15,41;UBERON:0003080,8.90e-15,41;UBERON:0006240,8.90e-15,41;UBERON:0001893,1.01e-13,34;UBERON:0003528,1.14e-12,34;UBERON:0002020,1.14e-12,34;UBERON:0001869,1.74e-12,32;UBERON:0002791,2.10e-12,32;UBERON:0000178,4.08e-12,15;UBERON:0000179,4.08e-12,15;UBERON:0000463,4.08e-12,15;UBERON:0002619,4.85e-12,22;UBERON:0001950,5.67e-12,20;UBERON:0000955,2.11e-10,68;UBERON:0006238,2.11e-10,68;UBERON:0000956,4.14e-10,25;UBERON:0000203,4.14e-10,25;UBERON:0003075,1.63e-09,82;UBERON:0007284,1.63e-09,82;UBERON:0001017,1.71e-09,81;UBERON:0001016,5.91e-09,89;UBERON:0002346,1.17e-08,86;UBERON:0003056,2.33e-08,61;UBERON:0010371,5.67e-08,104;UBERON:0004177,3.16e-07,7;UBERON:0005057,3.16e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0.940364164434263,0,0.273748850145768,0,0.229240217243854,0.410502947249729,0.0787107813136792,1.96682138424452,0.383829398097213,2.63187409637329,0,0,0,0,0,0.293600439334847,2.76997704265939,3.81034450193269,5.4252717678963,0,0.971680998056939,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.818718450173537,0,0.306083892370903,0,0,0,0.199463657621632,0,0.290209238628584,1.13477044938228,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0.560508562981536,3.16060901730092,40.5222126434496,22.4016134767024,19.9433454029524,4.34684888015763,65.5103755933517,57.7606322996375,44.8101475338196,0.557052284425868,16.7925367260657,12.4058980966828,15.7066240983709,0.25618263945135,0.650296737799391,9.70183637161689,7.73780049800375,12.1717296008722,66.7289534229272,64.2097987415311,54.3584723785879,1.92625882585863,18.0113631992903,11.6833331464094,9.1087089127021,25.8037985602518,19.5325036156926,18.0585888445191,17.1655635748661,16.51027283892,23.7368380449457,20.8363981798735,15.6014319414999,10.0803371612366,3.20928234940209,28.2407587571458,0,0,0,0,0,0,0.795285947051099,1.94653948121054,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51176 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |||
|TSSclassifier=S | |||
|UniProt=Q9UJU2,Q659G9 | |||
|association_with_transcript=16bp_to_ENST00000379951,NM_001130713,NM_001130714,NM_016269_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_2_at_LEF1_5end | |||
|id=chr4:109090075..109090095,- | |||
|ontology_enrichment_celltype=CL:0000791!3.65e-14!18;CL:0000789!3.65e-14!18;CL:0002420!3.65e-14!18;CL:0002419!3.65e-14!18;CL:0000790!3.65e-14!18;CL:0000084!1.31e-13!25;CL:0000827!1.31e-13!25;CL:0000625!2.03e-10!11;CL:0000542!1.39e-09!53;CL:0000051!1.39e-09!53;CL:0000838!3.98e-09!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.66e-22;18!CL:0000789;1.66e-22;18!CL:0002419;1.66e-22;18!CL:0000084;2.17e-21;25!CL:0000625;5.82e-16;11!CL:0000624;7.39e-10;6!CL:0000542;4.01e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.71e-22,18;CL:0000789,1.71e-22,18;CL:0002420,1.71e-22,18;CL:0002419,1.71e-22,18;CL:0000790,1.71e-22,18;CL:0000084,2.23e-21,25;CL:0000827,2.23e-21,25;CL:0000625,6.07e-16,11;CL:0000542,1.09e-12,53;CL:0000051,1.09e-12,53;CL:0000838,5.46e-12,52;CL:0000624,7.30e-10,6 | |||
|ontology_enrichment_development_v019=CL:0000790;1.66e-22;18!CL:0000051;4.01e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.35e-23!115;UBERON:0001049!1.15e-14!57;UBERON:0005068!1.15e-14!57;UBERON:0006241!1.15e-14!57;UBERON:0007135!1.15e-14!57;UBERON:0002780!1.42e-11!41;UBERON:0001890!1.42e-11!41;UBERON:0006240!1.42e-11!41;UBERON:0001017!4.84e-11!82;UBERON:0003080!4.96e-11!42;UBERON:0002616!5.07e-11!59;UBERON:0002020!6.87e-11!34;UBERON:0003528!6.87e-11!34;UBERON:0000178!6.97e-11!15;UBERON:0000179!6.97e-11!15;UBERON:0000463!6.97e-11!15;UBERON:0001893!7.93e-11!34;UBERON:0002791!2.20e-10!33;UBERON:0005743!2.69e-10!86;UBERON:0001869!4.97e-10!32;UBERON:0000073!6.64e-10!94;UBERON:0001016!6.64e-10!94;UBERON:0003075!1.27e-09!86;UBERON:0007284!1.27e-09!86;UBERON:0000955!1.89e-09!69;UBERON:0006238!1.89e-09!69;UBERON:0001950!2.25e-09!20;UBERON:0002619!3.68e-09!22;UBERON:0002346!1.68e-08!90;UBERON:0000956!4.90e-08!25;UBERON:0000203!4.90e-08!25;UBERON:0003056!1.65e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.79e-12;15!UBERON:0000179;3.79e-12;15!UBERON:0000463;3.79e-12;15!UBERON:0001950;5.03e-12;20!UBERON:0002619;5.17e-12;22!UBERON:0001893;1.43e-11;34!UBERON:0002780;2.29e-11;41!UBERON:0001890;2.29e-11;41!UBERON:0002791;4.74e-11;32!UBERON:0001869;4.76e-11;32!UBERON:0003528;1.21e-10;34!UBERON:0002020;1.21e-10;34!UBERON:0000956;4.38e-10;25!UBERON:0000203;4.38e-10;25!UBERON:0000073;4.90e-10;53!UBERON:0002616;4.90e-10;53!UBERON:0002390;1.80e-09;32!UBERON:0004177;3.17e-07;5!UBERON:0005057;3.17e-07;5 | |||
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| |||
|short_description=p2@LEF1 | |||
}} |
Revision as of 01:59, 13 September 2013
Short description: | p2@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LEF1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 16bp_to_ENST00000379951, NM_001130713, NM_001130714, NM_016269_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | Q9UJU2Q659G9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.71e-22 | 18 |
alpha-beta T cell | 1.71e-22 | 18 |
immature T cell | 1.71e-22 | 18 |
mature T cell | 1.71e-22 | 18 |
immature alpha-beta T cell | 1.71e-22 | 18 |
T cell | 2.23e-21 | 25 |
pro-T cell | 2.23e-21 | 25 |
CD8-positive, alpha-beta T cell | 6.07e-16 | 11 |
lymphocyte | 1.09e-12 | 53 |
common lymphoid progenitor | 1.09e-12 | 53 |
lymphoid lineage restricted progenitor cell | 5.46e-12 | 52 |
CD4-positive, alpha-beta T cell | 7.30e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.62e-17 | 114 |
neural tube | 2.90e-17 | 56 |
neural rod | 2.90e-17 | 56 |
future spinal cord | 2.90e-17 | 56 |
neural keel | 2.90e-17 | 56 |
regional part of nervous system | 3.05e-16 | 53 |
regional part of brain | 3.05e-16 | 53 |
regional part of forebrain | 8.90e-15 | 41 |
forebrain | 8.90e-15 | 41 |
anterior neural tube | 8.90e-15 | 41 |
future forebrain | 8.90e-15 | 41 |
telencephalon | 1.01e-13 | 34 |
brain grey matter | 1.14e-12 | 34 |
gray matter | 1.14e-12 | 34 |
cerebral hemisphere | 1.74e-12 | 32 |
regional part of telencephalon | 2.10e-12 | 32 |
blood | 4.08e-12 | 15 |
haemolymphatic fluid | 4.08e-12 | 15 |
organism substance | 4.08e-12 | 15 |
regional part of cerebral cortex | 4.85e-12 | 22 |
neocortex | 5.67e-12 | 20 |
brain | 2.11e-10 | 68 |
future brain | 2.11e-10 | 68 |
cerebral cortex | 4.14e-10 | 25 |
pallium | 4.14e-10 | 25 |
neural plate | 1.63e-09 | 82 |
presumptive neural plate | 1.63e-09 | 82 |
central nervous system | 1.71e-09 | 81 |
nervous system | 5.91e-09 | 89 |
neurectoderm | 1.17e-08 | 86 |
pre-chordal neural plate | 2.33e-08 | 61 |
ecto-epithelium | 5.67e-08 | 104 |
hemopoietic organ | 3.16e-07 | 7 |
immune organ | 3.16e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.