FFCP PHASE1:Mm9::chr15:54650539..54650542,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=73|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:54650539..54650542,-|id=chr15:54650539..54650542,-|ontology_enrichment_celltype=CL:0000181!4.01e-19!5;CL:0000417!4.01e-19!5;CL:0000668!4.01e-19!5;CL:0000412!4.01e-19!5;CL:0000182!4.01e-19!5;CL:0000414!8.45e-09!11;CL:0000057!5.34e-07!1;CL:0000632!5.34e-07!1|ontology_enrichment_celltype_v019_2=CL:0000182,1.65e-69,5;CL:0000223,3.40e-18,20;CL:0000066,9.61e-15,25;CL:0002320,2.15e-08,46;CL:0000134,2.15e-08,46;CL:0000219,2.91e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!1.87e-35!22;UBERON:0007499!1.87e-35!22;UBERON:0006925!1.87e-35!22;UBERON:0009497!1.87e-35!22;UBERON:0000015!1.87e-35!22;UBERON:0002423!1.87e-35!22;UBERON:0006235!1.87e-35!22;UBERON:0008835!1.87e-35!22;UBERON:0003894!1.87e-35!22;UBERON:0004161!1.87e-35!22;UBERON:0008836!1.87e-35!22;UBERON:0009854!7.47e-34!23;UBERON:0009856!7.47e-34!23;UBERON:0002365!4.95e-31!25;UBERON:0002330!4.95e-31!25;UBERON:0005256!1.45e-18!47;UBERON:0005172!9.66e-18!49;UBERON:0005173!9.66e-18!49;UBERON:0002417!9.66e-18!49;UBERON:0000916!9.66e-18!49;UBERON:0003914!8.35e-16!47;UBERON:0005057!1.93e-14!51;UBERON:0002368!3.51e-14!60;UBERON:0003929!2.82e-13!55;UBERON:0002530!5.87e-13!65;UBERON:0009569!9.79e-13!66;UBERON:0000949!1.58e-11!72;UBERON:0000490!8.60e-11!66;UBERON:0005911!2.99e-10!69;UBERON:0002405!4.42e-10!70;UBERON:0005177!1.71e-09!85;UBERON:0000466!9.67e-09!79;UBERON:0002100!5.43e-08!98;UBERON:0001041!2.90e-07!92;UBERON:0000077!8.44e-07!97|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.26e-16,22;UBERON:0007499,1.26e-16,22;UBERON:0006925,1.26e-16,22;UBERON:0009497,1.26e-16,22;UBERON:0000015,1.26e-16,22;UBERON:0002423,1.26e-16,22;UBERON:0006235,1.26e-16,22;UBERON:0008835,1.26e-16,22;UBERON:0003894,1.26e-16,22;UBERON:0004161,1.26e-16,22;UBERON:0008836,1.26e-16,22;UBERON:0009854,6.04e-16,23;UBERON:0009856,6.04e-16,23;UBERON:0002365,9.61e-15,25;UBERON:0002330,9.61e-15,25;UBERON:0005256,1.45e-08,45;UBERON:0002384,2.15e-08,46;UBERON:0003914,3.12e-08,47;UBERON:0005172,6.29e-08,49;UBERON:0005173,6.29e-08,49;UBERON:0002417,6.29e-08,49;UBERON:0000916,6.29e-08,49;UBERON:0003929,3.83e-07,55|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,2.719885334831,29.6836755400799,7.14754059192436,3.13618820968135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.592905254174298,0,0,0,0,0.241177159752417,0.50925170356284,0.863088412352432,0,0,0,0.744281895337007,0.312037673114561,0,0,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr15:54650539..54650542,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=73 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr15:54650539..54650542,- | |||
|id=chr15:54650539..54650542,- | |||
|ontology_enrichment_celltype=CL:0000181!4.01e-19!5;CL:0000417!4.01e-19!5;CL:0000668!4.01e-19!5;CL:0000412!4.01e-19!5;CL:0000182!4.01e-19!5;CL:0000414!8.45e-09!11;CL:0000057!5.34e-07!1;CL:0000632!5.34e-07!1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.65e-69,5;CL:0000223,3.40e-18,20;CL:0000066,9.61e-15,25;CL:0002320,2.15e-08,46;CL:0000134,2.15e-08,46;CL:0000219,2.91e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.87e-35!22;UBERON:0007499!1.87e-35!22;UBERON:0006925!1.87e-35!22;UBERON:0009497!1.87e-35!22;UBERON:0000015!1.87e-35!22;UBERON:0002423!1.87e-35!22;UBERON:0006235!1.87e-35!22;UBERON:0008835!1.87e-35!22;UBERON:0003894!1.87e-35!22;UBERON:0004161!1.87e-35!22;UBERON:0008836!1.87e-35!22;UBERON:0009854!7.47e-34!23;UBERON:0009856!7.47e-34!23;UBERON:0002365!4.95e-31!25;UBERON:0002330!4.95e-31!25;UBERON:0005256!1.45e-18!47;UBERON:0005172!9.66e-18!49;UBERON:0005173!9.66e-18!49;UBERON:0002417!9.66e-18!49;UBERON:0000916!9.66e-18!49;UBERON:0003914!8.35e-16!47;UBERON:0005057!1.93e-14!51;UBERON:0002368!3.51e-14!60;UBERON:0003929!2.82e-13!55;UBERON:0002530!5.87e-13!65;UBERON:0009569!9.79e-13!66;UBERON:0000949!1.58e-11!72;UBERON:0000490!8.60e-11!66;UBERON:0005911!2.99e-10!69;UBERON:0002405!4.42e-10!70;UBERON:0005177!1.71e-09!85;UBERON:0000466!9.67e-09!79;UBERON:0002100!5.43e-08!98;UBERON:0001041!2.90e-07!92;UBERON:0000077!8.44e-07!97 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.26e-16,22;UBERON:0007499,1.26e-16,22;UBERON:0006925,1.26e-16,22;UBERON:0009497,1.26e-16,22;UBERON:0000015,1.26e-16,22;UBERON:0002423,1.26e-16,22;UBERON:0006235,1.26e-16,22;UBERON:0008835,1.26e-16,22;UBERON:0003894,1.26e-16,22;UBERON:0004161,1.26e-16,22;UBERON:0008836,1.26e-16,22;UBERON:0009854,6.04e-16,23;UBERON:0009856,6.04e-16,23;UBERON:0002365,9.61e-15,25;UBERON:0002330,9.61e-15,25;UBERON:0005256,1.45e-08,45;UBERON:0002384,2.15e-08,46;UBERON:0003914,3.12e-08,47;UBERON:0005172,6.29e-08,49;UBERON:0005173,6.29e-08,49;UBERON:0002417,6.29e-08,49;UBERON:0000916,6.29e-08,49;UBERON:0003929,3.83e-07,55 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,2.719885334831,29.6836755400799,7.14754059192436,3.13618820968135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.592905254174298,0,0,0,0,0.241177159752417,0.50925170356284,0.863088412352432,0,0,0,0.744281895337007,0.312037673114561,0,0,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr15:54650539..54650542,- | |||
}} |
Revision as of 10:34, 13 September 2013
Short description: | p@chr15:54650539..54650542, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:54650539..54650542, - |
Coexpression cluster: | MCL_coexpression_mm9:73 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.65e-69 | 5 |
endodermal cell | 3.40e-18 | 20 |
epithelial cell | 9.61e-15 | 25 |
connective tissue cell | 2.15e-08 | 46 |
mesenchymal cell | 2.15e-08 | 46 |
motile cell | 2.91e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
liver | 1.26e-16 | 22 |
epithelial sac | 1.26e-16 | 22 |
digestive gland | 1.26e-16 | 22 |
epithelium of foregut-midgut junction | 1.26e-16 | 22 |
anatomical boundary | 1.26e-16 | 22 |
hepatobiliary system | 1.26e-16 | 22 |
foregut-midgut junction | 1.26e-16 | 22 |
hepatic diverticulum | 1.26e-16 | 22 |
liver primordium | 1.26e-16 | 22 |
septum transversum | 1.26e-16 | 22 |
liver bud | 1.26e-16 | 22 |
digestive tract diverticulum | 6.04e-16 | 23 |
sac | 6.04e-16 | 23 |
exocrine gland | 9.61e-15 | 25 |
exocrine system | 9.61e-15 | 25 |
trunk mesenchyme | 1.45e-08 | 45 |
connective tissue | 2.15e-08 | 46 |
epithelial tube | 3.12e-08 | 47 |
abdomen element | 6.29e-08 | 49 |
abdominal segment element | 6.29e-08 | 49 |
abdominal segment of trunk | 6.29e-08 | 49 |
abdomen | 6.29e-08 | 49 |
gut epithelium | 3.83e-07 | 55 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.