FFCP PHASE1:Mm9::chr16:10545483..10545520,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74374|HGNC=|MCL_coexpression_id=1|UniProt=Q80U30,D3YVA1|association_with_transcript=0bp_to_ENSMUST00000038145,ENSMUST00000115827,ENSMUST00000115828,ENSMUST00000150894_5end|description=CAGE_peak_1_at_Clec16a_5end|id=chr16:10545483..10545520,+|ontology_enrichment_celltype=CL:0000117!1.07e-11!23;CL:0000337!1.07e-11!23;CL:0000540!1.50e-07!33;CL:0000047!1.50e-07!33;CL:0000031!1.50e-07!33;CL:0000404!1.50e-07!33;CL:0002319!2.53e-07!43;CL:0000221!7.71e-07!44;CL:0000133!7.71e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.07e-11,23;CL:0000337,1.07e-11,23;CL:0000540,1.50e-07,33;CL:0000047,1.50e-07,33;CL:0000031,1.50e-07,33;CL:0000404,1.50e-07,33;CL:0002319,2.53e-07,43;CL:0000221,7.71e-07,44;CL:0000133,7.71e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.50e-17!75;UBERON:0001016!9.50e-17!75;UBERON:0001017!1.63e-16!73;UBERON:0005743!1.63e-16!73;UBERON:0001049!4.40e-16!52;UBERON:0005068!4.40e-16!52;UBERON:0006241!4.40e-16!52;UBERON:0007135!4.40e-16!52;UBERON:0000955!6.73e-16!50;UBERON:0006238!6.73e-16!50;UBERON:0002020!2.31e-15!34;UBERON:0002616!2.90e-15!49;UBERON:0000033!1.57e-13!63;UBERON:0002791!2.84e-13!29;UBERON:0003528!2.84e-13!29;UBERON:0001893!2.84e-13!29;UBERON:0007811!7.49e-13!86;UBERON:0004121!1.81e-12!102;UBERON:0000924!1.81e-12!102;UBERON:0006601!1.81e-12!102;UBERON:0000153!1.91e-12!94;UBERON:0003080!1.01e-11!40;UBERON:0002780!3.59e-11!39;UBERON:0001890!3.59e-11!39;UBERON:0006240!3.59e-11!39;UBERON:0002346!1.92e-10!71;UBERON:0003075!1.92e-10!71;UBERON:0007284!1.92e-10!71;UBERON:0003056!3.23e-10!49;UBERON:0000956!5.21e-10!21;UBERON:0001869!5.21e-10!21;UBERON:0000203!5.21e-10!21;UBERON:0000064!2.09e-08!99;UBERON:0002619!2.62e-08!17;UBERON:0002021!3.64e-07!10;UBERON:0000411!3.64e-07!10;UBERON:0001950!3.64e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.90e-17,54;UBERON:0001016,9.50e-17,75;UBERON:0001017,1.63e-16,73;UBERON:0001049,4.40e-16,52;UBERON:0005068,4.40e-16,52;UBERON:0006241,4.40e-16,52;UBERON:0007135,4.40e-16,52;UBERON:0002020,2.31e-15,34;UBERON:0004121,6.05e-15,95;UBERON:0000924,6.05e-15,95;UBERON:0006601,6.05e-15,95;UBERON:0000955,5.36e-14,47;UBERON:0006238,5.36e-14,47;UBERON:0002616,2.20e-13,46;UBERON:0002346,2.69e-13,64;UBERON:0003075,2.69e-13,64;UBERON:0007284,2.69e-13,64;UBERON:0003528,2.84e-13,29;UBERON:0002791,2.84e-13,29;UBERON:0001893,2.84e-13,29;UBERON:0010371,4.61e-12,73;UBERON:0003080,1.01e-11,40;UBERON:0002780,3.59e-11,39;UBERON:0001890,3.59e-11,39;UBERON:0006240,3.59e-11,39;UBERON:0003056,3.23e-10,49;UBERON:0000956,5.21e-10,21;UBERON:0001869,5.21e-10,21;UBERON:0000203,5.21e-10,21;UBERON:0010314,1.36e-08,92;UBERON:0002619,2.62e-08,17;UBERON:0002021,3.64e-07,10;UBERON:0000411,3.64e-07,10;UBERON:0001950,3.64e-07,10|phase1_expression=8.64803774365887,20.5895490507223,17.2899710968024,30.8513495532967,37.567179745976,12.255186849568,12.3814699515629,10.7172358456508,6.05391505252167,8.89445200023575,5.30775701499065,4.86610169871552,12.3264525550468,12.0640155338216,6.32908547449759,5.66930748691513,2.09868563438444,10.8834447048592,14.2599010949968,8.06340338416257,18.5394372529332,6.35462087685666,7.05239430675126,11.1994695955385,8.48814339948529,16.6527269593356,11.630573896295,12.0663890304098,9.31114755336232,9.57714493087737,4.43461021310609,5.08024538767705,14.7615549020297,15.8481681015439,5.77703239502549,7.48055904113216,6.32925004413344,10.0447591376858,10.1573594788094,7.32933241563318,14.1175557127443,17.7591826089196,20.8769451803396,5.5394599909254,6.69087746048796,8.25960384727567,10.9534788208725,8.72100625521786,10.7646229539891,10.4992145500113,9.51907667052465,10.062679505548,10.5703041816374,10.1550699881588,13.779845764841,3.34437266846731,7.16333599846892,5.15672092277442,22.659443616275,16.9277113367051,27.8885817542719,7.45457970552091,3.55717918444456,10.3488467487361,7.9109309005358,6.3943210345149,8.98800331555214,13.831858991576,17.7309237047497,17.6857779214515,14.0917724105426,16.8534080798244,16.565140571371,16.9037302916637,22.3319947472491,16.5459381589804,34.1359231098105,32.4325838736377,25.4986845205364,21.4974649000216,24.5186884854458,16.6692278578163,20.6595419261022,15.1945904708554,22.9197371665215,18.5616008848411,18.2235751422852,17.8943467992289,11.3589289999776,11.7891633766585,9.56552812715537,7.74381489283248,1.3599426674155,11.873470216032,10.3964226791627,12.9927797258227,10.8142203501449,6.81721290312231,4.93593408745451,8.83348936275851,6.76048414928066,11.5493829672886,25.4805239706646,21.3320010945999,4.76280290224671,5.82727690592727,6.0662933401774,11.3042040921869,26.6706020156587,11.1331604298619,7.28638372417771,3.65358573974569,6.6878494204257,6.17962826265753,6.82014501387088,9.92766071504436,8.40462890296871,15.3275318335106,7.96149496754887,9.54424414689714,9.71702681225732,8.24287930329878,9.31958806090611,24.0080253549469,21.5730108017859,11.7510245395952,5.51149572727233,7.19883277192089,5.71816021828791,25.314618059415,15.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| ||
|EntrezGene=74374 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q80U30,D3YVA1 | |||
|association_with_transcript=0bp_to_ENSMUST00000038145,ENSMUST00000115827,ENSMUST00000115828,ENSMUST00000150894_5end | |||
|description=CAGE_peak_1_at_Clec16a_5end | |||
|id=chr16:10545483..10545520,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.07e-11!23;CL:0000337!1.07e-11!23;CL:0000540!1.50e-07!33;CL:0000047!1.50e-07!33;CL:0000031!1.50e-07!33;CL:0000404!1.50e-07!33;CL:0002319!2.53e-07!43;CL:0000221!7.71e-07!44;CL:0000133!7.71e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.07e-11,23;CL:0000337,1.07e-11,23;CL:0000540,1.50e-07,33;CL:0000047,1.50e-07,33;CL:0000031,1.50e-07,33;CL:0000404,1.50e-07,33;CL:0002319,2.53e-07,43;CL:0000221,7.71e-07,44;CL:0000133,7.71e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.50e-17!75;UBERON:0001016!9.50e-17!75;UBERON:0001017!1.63e-16!73;UBERON:0005743!1.63e-16!73;UBERON:0001049!4.40e-16!52;UBERON:0005068!4.40e-16!52;UBERON:0006241!4.40e-16!52;UBERON:0007135!4.40e-16!52;UBERON:0000955!6.73e-16!50;UBERON:0006238!6.73e-16!50;UBERON:0002020!2.31e-15!34;UBERON:0002616!2.90e-15!49;UBERON:0000033!1.57e-13!63;UBERON:0002791!2.84e-13!29;UBERON:0003528!2.84e-13!29;UBERON:0001893!2.84e-13!29;UBERON:0007811!7.49e-13!86;UBERON:0004121!1.81e-12!102;UBERON:0000924!1.81e-12!102;UBERON:0006601!1.81e-12!102;UBERON:0000153!1.91e-12!94;UBERON:0003080!1.01e-11!40;UBERON:0002780!3.59e-11!39;UBERON:0001890!3.59e-11!39;UBERON:0006240!3.59e-11!39;UBERON:0002346!1.92e-10!71;UBERON:0003075!1.92e-10!71;UBERON:0007284!1.92e-10!71;UBERON:0003056!3.23e-10!49;UBERON:0000956!5.21e-10!21;UBERON:0001869!5.21e-10!21;UBERON:0000203!5.21e-10!21;UBERON:0000064!2.09e-08!99;UBERON:0002619!2.62e-08!17;UBERON:0002021!3.64e-07!10;UBERON:0000411!3.64e-07!10;UBERON:0001950!3.64e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.90e-17,54;UBERON:0001016,9.50e-17,75;UBERON:0001017,1.63e-16,73;UBERON:0001049,4.40e-16,52;UBERON:0005068,4.40e-16,52;UBERON:0006241,4.40e-16,52;UBERON:0007135,4.40e-16,52;UBERON:0002020,2.31e-15,34;UBERON:0004121,6.05e-15,95;UBERON:0000924,6.05e-15,95;UBERON:0006601,6.05e-15,95;UBERON:0000955,5.36e-14,47;UBERON:0006238,5.36e-14,47;UBERON:0002616,2.20e-13,46;UBERON:0002346,2.69e-13,64;UBERON:0003075,2.69e-13,64;UBERON:0007284,2.69e-13,64;UBERON:0003528,2.84e-13,29;UBERON:0002791,2.84e-13,29;UBERON:0001893,2.84e-13,29;UBERON:0010371,4.61e-12,73;UBERON:0003080,1.01e-11,40;UBERON:0002780,3.59e-11,39;UBERON:0001890,3.59e-11,39;UBERON:0006240,3.59e-11,39;UBERON:0003056,3.23e-10,49;UBERON:0000956,5.21e-10,21;UBERON:0001869,5.21e-10,21;UBERON:0000203,5.21e-10,21;UBERON:0010314,1.36e-08,92;UBERON:0002619,2.62e-08,17;UBERON:0002021,3.64e-07,10;UBERON:0000411,3.64e-07,10;UBERON:0001950,3.64e-07,10 | |||
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| |||
|short_description=p1@Clec16a | |||
}} |
Revision as of 11:56, 13 September 2013
Short description: | p1@Clec16a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Clec16a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000038145, ENSMUST00000115827, ENSMUST00000115828, ENSMUST00000150894_5end |
EntrezGene: | Clec16a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.07e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.07e-11 | 23 |
neuron | 1.50e-07 | 33 |
neuronal stem cell | 1.50e-07 | 33 |
neuroblast | 1.50e-07 | 33 |
electrically signaling cell | 1.50e-07 | 33 |
neural cell | 2.53e-07 | 43 |
ectodermal cell | 7.71e-07 | 44 |
neurectodermal cell | 7.71e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.90e-17 | 54 |
nervous system | 9.50e-17 | 75 |
central nervous system | 1.63e-16 | 73 |
neural tube | 4.40e-16 | 52 |
neural rod | 4.40e-16 | 52 |
future spinal cord | 4.40e-16 | 52 |
neural keel | 4.40e-16 | 52 |
gray matter | 2.31e-15 | 34 |
ectoderm-derived structure | 6.05e-15 | 95 |
ectoderm | 6.05e-15 | 95 |
presumptive ectoderm | 6.05e-15 | 95 |
brain | 5.36e-14 | 47 |
future brain | 5.36e-14 | 47 |
regional part of brain | 2.20e-13 | 46 |
neurectoderm | 2.69e-13 | 64 |
neural plate | 2.69e-13 | 64 |
presumptive neural plate | 2.69e-13 | 64 |
brain grey matter | 2.84e-13 | 29 |
regional part of telencephalon | 2.84e-13 | 29 |
telencephalon | 2.84e-13 | 29 |
ecto-epithelium | 4.61e-12 | 73 |
anterior neural tube | 1.01e-11 | 40 |
regional part of forebrain | 3.59e-11 | 39 |
forebrain | 3.59e-11 | 39 |
future forebrain | 3.59e-11 | 39 |
pre-chordal neural plate | 3.23e-10 | 49 |
cerebral cortex | 5.21e-10 | 21 |
cerebral hemisphere | 5.21e-10 | 21 |
pallium | 5.21e-10 | 21 |
structure with developmental contribution from neural crest | 1.36e-08 | 92 |
regional part of cerebral cortex | 2.62e-08 | 17 |
occipital lobe | 3.64e-07 | 10 |
visual cortex | 3.64e-07 | 10 |
neocortex | 3.64e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.