FFCP PHASE1:Mm9::chr16:94592393..94592414,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22129|HGNC=|MCL_coexpression_id=1|UniProt=G5E8U3,F7DAQ7,D3Z2K0,D3Z3E5|association_with_transcript=0bp_to_ENSMUST00000119131,ENSMUST00000127667,ENSMUST00000147046,ENSMUST00000149885,ENSMUST00000151192_5end|description=CAGE_peak_2_at_Ttc3_5end|id=chr16:94592393..94592414,+|ontology_enrichment_celltype=CL:0000540!1.63e-14!33;CL:0000047!1.63e-14!33;CL:0000031!1.63e-14!33;CL:0000404!1.63e-14!33;CL:0000117!2.26e-13!23;CL:0000337!2.26e-13!23;CL:0000393!3.90e-10!39;CL:0000211!3.90e-10!39;CL:0000221!5.12e-07!44;CL:0000133!5.12e-07!44;CL:0002319!7.72e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,1.63e-14,33;CL:0000047,1.63e-14,33;CL:0000031,1.63e-14,33;CL:0000404,1.63e-14,33;CL:0000117,2.26e-13,23;CL:0000337,2.26e-13,23;CL:0000393,3.90e-10,39;CL:0000211,3.90e-10,39;CL:0000221,5.12e-07,44;CL:0000133,5.12e-07,44;CL:0002319,7.72e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.96e-22!73;UBERON:0005743!5.96e-22!73;UBERON:0002346!2.66e-21!71;UBERON:0003075!2.66e-21!71;UBERON:0007284!2.66e-21!71;UBERON:0000073!5.52e-21!75;UBERON:0001016!5.52e-21!75;UBERON:0000033!9.64e-21!63;UBERON:0001049!1.08e-19!52;UBERON:0005068!1.08e-19!52;UBERON:0006241!1.08e-19!52;UBERON:0007135!1.08e-19!52;UBERON:0004121!4.97e-19!102;UBERON:0000924!4.97e-19!102;UBERON:0006601!4.97e-19!102;UBERON:0000955!1.05e-18!50;UBERON:0006238!1.05e-18!50;UBERON:0003056!1.62e-18!49;UBERON:0002616!4.06e-18!49;UBERON:0000153!2.63e-16!94;UBERON:0002020!3.60e-16!34;UBERON:0003080!6.69e-16!40;UBERON:0002780!3.23e-15!39;UBERON:0001890!3.23e-15!39;UBERON:0006240!3.23e-15!39;UBERON:0007811!4.02e-15!86;UBERON:0002791!3.57e-13!29;UBERON:0003528!3.57e-13!29;UBERON:0001893!3.57e-13!29;UBERON:0000956!8.60e-09!21;UBERON:0001869!8.60e-09!21;UBERON:0000203!8.60e-09!21;UBERON:0002021!4.28e-07!10;UBERON:0000411!4.28e-07!10;UBERON:0001950!4.28e-07!10;UBERON:0002619!5.42e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.37e-23,64;UBERON:0003075,4.37e-23,64;UBERON:0007284,4.37e-23,64;UBERON:0001017,5.96e-22,73;UBERON:0000073,3.05e-21,54;UBERON:0001016,5.52e-21,75;UBERON:0010371,1.07e-20,73;UBERON:0004121,5.89e-20,95;UBERON:0000924,5.89e-20,95;UBERON:0006601,5.89e-20,95;UBERON:0010314,9.54e-20,92;UBERON:0001049,1.08e-19,52;UBERON:0005068,1.08e-19,52;UBERON:0006241,1.08e-19,52;UBERON:0007135,1.08e-19,52;UBERON:0003056,1.62e-18,49;UBERON:0000955,1.35e-16,47;UBERON:0006238,1.35e-16,47;UBERON:0002020,3.60e-16,34;UBERON:0002616,5.02e-16,46;UBERON:0003080,6.69e-16,40;UBERON:0002780,3.23e-15,39;UBERON:0001890,3.23e-15,39;UBERON:0006240,3.23e-15,39;UBERON:0003528,3.56e-13,29;UBERON:0002791,3.56e-13,29;UBERON:0001893,3.56e-13,29;UBERON:0000956,8.60e-09,21;UBERON:0001869,8.60e-09,21;UBERON:0000203,8.60e-09,21;UBERON:0002021,4.28e-07,10;UBERON:0000411,4.28e-07,10;UBERON:0001950,4.28e-07,10;UBERON:0002619,5.42e-07,17|phase1_expression=60.2159665114025,5.58360652222978,5.45999087267443,14.8207463540347,9.01612313903425,8.39396359559449,7.70921713965235,21.3053483678601,30.9735188733667,39.7909694747389,7.36237263369671,6.70086135560826,13.0112554747716,13.9872643870396,2.33176833270964,3.84703008040669,2.79824751251259,5.67831897644828,7.67840828192137,6.36584477697045,34.9527922520897,10.1276770224903,11.4927907221132,6.07971206614945,5.50582274561208,6.31655160526522,5.59990595006797,4.52489588640367,6.65081968097309,10.837295579677,3.10422714917427,5.08024538767705,6.76571266343027,0,8.37669697278696,7.31432439577366,6.94175811292055,0.837063261473815,0,1.57057123192139,1.76469446409304,0,1.45653105909346,7.55380907853464,8.81979301609777,16.3356609423897,4.69434806608824,5.01457859675027,1.5378032791413,7.19390626574849,2.65974201088189,4.31257693094915,7.04686945442493,8.70434570413613,12.4354705682712,6.68874533693462,8.5960031981627,4.12537673821954,77.8918374309451,60.3049716370117,78.5950940347662,6.77689064138264,1.77858959222228,0.899899717281399,0.988866362566974,1.4209602298922,4.79360176829448,6.53171119046643,82.1221729483143,52.9223278260227,62.6768384827118,92.5509189468324,74.6535668416454,78.0266390999257,57.2197461978871,70.7798465689716,183.893521268979,214.770102659286,212.898655093153,87.5724950528487,108.870295886867,113.038201410817,110.835650603548,166.577732569377,167.466879563384,170.000693818306,173.123963851709,157.693931168204,7.79979791331796,17.7593166250946,25.218210517046,10.3250865237766,0,3.2382191498269,5.84798775702902,4.03224198387602,12.4995533917259,26.2462696770209,14.5480162577607,21.5537140451308,41.5488088341207,38.4979432242953,81.5376767061266,35.5533351576666,5.41227602528035,8.36087556067825,4.04419556011827,11.5325718516251,13.2058320660058,18.2583831049734,23.7674897669606,15.5277393939192,23.0615497256059,21.553337599025,23.8705075485481,10.9329934456818,5.19109432242185,10.9895511259133,7.96149496754887,31.22100203985,9.71702681225732,5.81850303762267,13.0474232852686,78.1724728020831,99.6966324432046,7.40825460104915,10.0644704584973,10.1983464268879,8.00542430560307,180.198139204002,127.185167583578,117.738127929754,168.088117625931,166.982193636706,139.841353988584,148.612996970066,36.2548135307126,14.4312085907708,27.7995034277042,19.7815344533286,47.3638412384242,49.8887566620636,63.7419939510936,55.9114874170503,65.6552216810314,64.3130875829946,68.1211537549229,37.5119887571573,25.8681591519411,49.7348990841365,53.3131906216765,41.8663848936668,44.4875598760957,38.3077383174383,32.3077954160471,35.4280994936918,5.61770549850588,3.08817488537658,5.68326998791185,32.7258720606093,28.1431271977315,29.8903022025285,31.9605393040034,30.8919843843424,33.4759634965611,32.0896843755563,32.4610815693539,33.745183944112,36.8614063806196,27.7443014293671,27.1580511978617,19.2983983401439,21.735461413814,19.7283435577747,133.113537441093,117.311258112384,4.95628174475697,5.02456076660734,39.0317498479478,40.4091809037163,28.0931065682163,21.3784536100743,18.6797556829691,17.1203063501303,9.01605216934572,11.1995289212327,13.3207660664143,16.5133871794155,14.2323783596958,6.29173586057955,7.99710784536369,7.36822711041159,13.2767530667157,37.4735121359911,28.1769339182701,32.7878637830956,31.2263504339877,28.61541451525,25.0416687012059,14.0229640580622,13.1878931386755,10.2419646055094,7.41131567717872,12.0128476115588,11.4004217165658,5.17182858485164,9.12870546248263,8.44120059133459,11.4581633301639,6.32931502391783,8.75530224585191,6.31491250332587,21.5652309791032,14.1413560114031,12.4815069245824,8.08252409430758,7.17589654087649,2.8946611281802,7.944387177164,28.4237117655727,35.3633998879196,26.8197235524797,22.5302638356962,19.2632196058088,19.0434912708811,13.2690880543303,22.3841904630791,17.717175171902,24.874943910568,12.4536119183961,8.11619414769709,6.94315481191256,1.50791283939272,0.54390568381871,3.44234991113325,8.55403913544671,145.137733348964,160.814434004503,19.3443235544477,20.1976741763498,40.7005603046971,36.3108032195874,47.3931475012158,35.3673820969777,34.9793918309359,39.9137908412254,37.2425845540903,38.5777732442932,53.3638500227807,120.495493658178,18.1683309066584,23.5046596840777,38.7670963261511,24.4155781999352,2.65490276679926,20.3935734370184,16.3254720760966,13.7681708221806,9.15435867930396,15.0643222492524,15.7641258832615,22.5390912276053,17.4683715408513,11.3773232856894,3.16255825724996,6.18813259489121,45.6189071710076,59.4201610303324,14.4881725836685,41.7957218311605,55.5074931300316,49.9432689285798,57.4276081901402,14.0053876592716,5.39744928546534,6.14313005505079,7.05690873775878,11.7069239588451,36.9753537133624,21.8935917489206,15.9958940964203,13.29541287935,7.86998258900597,137.770999393809,5.46786818553129,17.5428837768739,11.2968661695524,5.65105371014073,4.10082683163076,4.80434163733698,18.3576704393364,20.4329120392541,20.4535961230547,4.77335309007557,36.6949752554117,35.3775872800717,28.9454313402427,19.8633881213745,19.2159056096636,16.7231789517178,19.1756017282779,9.16145796944104,8.03612834409116,6.83473244395618,3.38215763210514,28.8566933864879,22.9987301735366,31.5010925117357,25.3153254016353,23.9917698196905,28.2830945136267,22.3951541931594,18.9795413410537,14.4950472495604,12.9613502816039,14.220500428268,20.0697963137263,19.1042380326579,14.2912905275575,18.0816962624156,13.510332125126,14.3032584928763,13.7351260272357,12.2169404437259,10.745159738355,12.9057516975156,14.2288505880039,13.2772341463655,10.6357980985228,12.2434407152214,3.55177525398503,4.03712354742641,3.8613461763738,11.3981860478992,12.7624083306804,18.3151624267265,11.5758924702696,7.52358156053045,124.245405375755,114.620983890287,118.016475768516,129.061739940109,154.143566948395,147.301809990992,133.654455045898,112.129979602831,150.89642219174,131.511119184962,55.6300183051187,52.6712832889361,50.3664136974696,50.5661971502052,47.372574753924,54.9692090265542,49.116526844157,52.7449746531569,50.0633966963232,49.0232590821767,49.9354220783772,53.3812546122596,48.0380933320497,53.9091783248999,54.3913891009658,49.0582502021566,57.710394320538,58.0656753595752,55.2195107076431,49.6060360852919,36.6870100052395,43.659048315197,52.6943979783579,47.5282782387714,53.8305655975691,51.530296206031,38.9636582219006,47.0894783473739,49.0252850983561,45.4525240042768,49.2335325215323,48.8582232582795,51.1538803962112,56.8618207152495,42.8252676378134,40.7191242038852,39.7683734357194,39.5362739448869,46.6743530247978,27.794518809059,24.1142549045238|short_description=p2@Ttc3}} | ||
|EntrezGene=22129 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=G5E8U3,F7DAQ7,D3Z2K0,D3Z3E5 | |||
|association_with_transcript=0bp_to_ENSMUST00000119131,ENSMUST00000127667,ENSMUST00000147046,ENSMUST00000149885,ENSMUST00000151192_5end | |||
|description=CAGE_peak_2_at_Ttc3_5end | |||
|id=chr16:94592393..94592414,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.63e-14!33;CL:0000047!1.63e-14!33;CL:0000031!1.63e-14!33;CL:0000404!1.63e-14!33;CL:0000117!2.26e-13!23;CL:0000337!2.26e-13!23;CL:0000393!3.90e-10!39;CL:0000211!3.90e-10!39;CL:0000221!5.12e-07!44;CL:0000133!5.12e-07!44;CL:0002319!7.72e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.63e-14,33;CL:0000047,1.63e-14,33;CL:0000031,1.63e-14,33;CL:0000404,1.63e-14,33;CL:0000117,2.26e-13,23;CL:0000337,2.26e-13,23;CL:0000393,3.90e-10,39;CL:0000211,3.90e-10,39;CL:0000221,5.12e-07,44;CL:0000133,5.12e-07,44;CL:0002319,7.72e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.96e-22!73;UBERON:0005743!5.96e-22!73;UBERON:0002346!2.66e-21!71;UBERON:0003075!2.66e-21!71;UBERON:0007284!2.66e-21!71;UBERON:0000073!5.52e-21!75;UBERON:0001016!5.52e-21!75;UBERON:0000033!9.64e-21!63;UBERON:0001049!1.08e-19!52;UBERON:0005068!1.08e-19!52;UBERON:0006241!1.08e-19!52;UBERON:0007135!1.08e-19!52;UBERON:0004121!4.97e-19!102;UBERON:0000924!4.97e-19!102;UBERON:0006601!4.97e-19!102;UBERON:0000955!1.05e-18!50;UBERON:0006238!1.05e-18!50;UBERON:0003056!1.62e-18!49;UBERON:0002616!4.06e-18!49;UBERON:0000153!2.63e-16!94;UBERON:0002020!3.60e-16!34;UBERON:0003080!6.69e-16!40;UBERON:0002780!3.23e-15!39;UBERON:0001890!3.23e-15!39;UBERON:0006240!3.23e-15!39;UBERON:0007811!4.02e-15!86;UBERON:0002791!3.57e-13!29;UBERON:0003528!3.57e-13!29;UBERON:0001893!3.57e-13!29;UBERON:0000956!8.60e-09!21;UBERON:0001869!8.60e-09!21;UBERON:0000203!8.60e-09!21;UBERON:0002021!4.28e-07!10;UBERON:0000411!4.28e-07!10;UBERON:0001950!4.28e-07!10;UBERON:0002619!5.42e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.37e-23,64;UBERON:0003075,4.37e-23,64;UBERON:0007284,4.37e-23,64;UBERON:0001017,5.96e-22,73;UBERON:0000073,3.05e-21,54;UBERON:0001016,5.52e-21,75;UBERON:0010371,1.07e-20,73;UBERON:0004121,5.89e-20,95;UBERON:0000924,5.89e-20,95;UBERON:0006601,5.89e-20,95;UBERON:0010314,9.54e-20,92;UBERON:0001049,1.08e-19,52;UBERON:0005068,1.08e-19,52;UBERON:0006241,1.08e-19,52;UBERON:0007135,1.08e-19,52;UBERON:0003056,1.62e-18,49;UBERON:0000955,1.35e-16,47;UBERON:0006238,1.35e-16,47;UBERON:0002020,3.60e-16,34;UBERON:0002616,5.02e-16,46;UBERON:0003080,6.69e-16,40;UBERON:0002780,3.23e-15,39;UBERON:0001890,3.23e-15,39;UBERON:0006240,3.23e-15,39;UBERON:0003528,3.56e-13,29;UBERON:0002791,3.56e-13,29;UBERON:0001893,3.56e-13,29;UBERON:0000956,8.60e-09,21;UBERON:0001869,8.60e-09,21;UBERON:0000203,8.60e-09,21;UBERON:0002021,4.28e-07,10;UBERON:0000411,4.28e-07,10;UBERON:0001950,4.28e-07,10;UBERON:0002619,5.42e-07,17 | |||
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| |||
|short_description=p2@Ttc3 | |||
}} |
Revision as of 13:23, 13 September 2013
Short description: | p2@Ttc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ttc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000119131, ENSMUST00000127667, ENSMUST00000147046, ENSMUST00000149885, ENSMUST00000151192_5end |
EntrezGene: | Ttc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.63e-14 | 33 |
neuronal stem cell | 1.63e-14 | 33 |
neuroblast | 1.63e-14 | 33 |
electrically signaling cell | 1.63e-14 | 33 |
CNS neuron (sensu Vertebrata) | 2.26e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.26e-13 | 23 |
electrically responsive cell | 3.90e-10 | 39 |
electrically active cell | 3.90e-10 | 39 |
ectodermal cell | 5.12e-07 | 44 |
neurectodermal cell | 5.12e-07 | 44 |
neural cell | 7.72e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.37e-23 | 64 |
neural plate | 4.37e-23 | 64 |
presumptive neural plate | 4.37e-23 | 64 |
central nervous system | 5.96e-22 | 73 |
regional part of nervous system | 3.05e-21 | 54 |
nervous system | 5.52e-21 | 75 |
ecto-epithelium | 1.07e-20 | 73 |
ectoderm-derived structure | 5.89e-20 | 95 |
ectoderm | 5.89e-20 | 95 |
presumptive ectoderm | 5.89e-20 | 95 |
structure with developmental contribution from neural crest | 9.54e-20 | 92 |
neural tube | 1.08e-19 | 52 |
neural rod | 1.08e-19 | 52 |
future spinal cord | 1.08e-19 | 52 |
neural keel | 1.08e-19 | 52 |
pre-chordal neural plate | 1.62e-18 | 49 |
brain | 1.35e-16 | 47 |
future brain | 1.35e-16 | 47 |
gray matter | 3.60e-16 | 34 |
regional part of brain | 5.02e-16 | 46 |
anterior neural tube | 6.69e-16 | 40 |
regional part of forebrain | 3.23e-15 | 39 |
forebrain | 3.23e-15 | 39 |
future forebrain | 3.23e-15 | 39 |
brain grey matter | 3.56e-13 | 29 |
regional part of telencephalon | 3.56e-13 | 29 |
telencephalon | 3.56e-13 | 29 |
cerebral cortex | 8.60e-09 | 21 |
cerebral hemisphere | 8.60e-09 | 21 |
pallium | 8.60e-09 | 21 |
occipital lobe | 4.28e-07 | 10 |
visual cortex | 4.28e-07 | 10 |
neocortex | 4.28e-07 | 10 |
regional part of cerebral cortex | 5.42e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.