FFCP PHASE1:Hg19::chr5:140890849..140890861,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5098|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=8716|TSSclassifier=N|UniProt=Q9BT64|association_with_transcript=324bp_to_BC004321_5end|description=CAGE_peak_4_at_PCDHGC3_5end|id=chr5:140890849..140890861,+|ontology_enrichment_celltype=CL:0000055!4.89e-18!180;CL:0000057!4.78e-10!75|ontology_enrichment_celltype_v019=CL:0000153;3.28e-10;9!CL:0000447;3.28e-10;9!CL:0000499;1.42e-07;28!CL:0000138;4.44e-07;6|ontology_enrichment_celltype_v019_2=CL:0000153,1.93e-10,9;CL:0000447,1.93e-10,9;CL:0000499,1.19e-07,28;CL:0000058,2.69e-07,6;CL:0000138,2.69e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.09e-19!82;UBERON:0005743!1.41e-19!86;UBERON:0000073!1.66e-17!94;UBERON:0001016!1.66e-17!94;UBERON:0001049!3.64e-16!57;UBERON:0005068!3.64e-16!57;UBERON:0006241!3.64e-16!57;UBERON:0007135!3.64e-16!57;UBERON:0000955!1.31e-15!69;UBERON:0006238!1.31e-15!69;UBERON:0002616!1.85e-14!59;UBERON:0002346!7.93e-13!90;UBERON:0002020!1.28e-12!34;UBERON:0003528!1.28e-12!34;UBERON:0003080!1.49e-12!42;UBERON:0000924!1.50e-12!173;UBERON:0006601!1.50e-12!173;UBERON:0002780!4.11e-12!41;UBERON:0001890!4.11e-12!41;UBERON:0006240!4.11e-12!41;UBERON:0001893!5.51e-12!34;UBERON:0001869!6.58e-12!32;UBERON:0002791!6.70e-12!33;UBERON:0000033!7.41e-12!123;UBERON:0003075!7.78e-12!86;UBERON:0007284!7.78e-12!86;UBERON:0004121!1.13e-11!169;UBERON:0000475!2.24e-11!365;UBERON:0000153!5.66e-11!129;UBERON:0007811!5.66e-11!129;UBERON:0000956!6.30e-10!25;UBERON:0000203!6.30e-10!25;UBERON:0000119!2.54e-09!312;UBERON:0000483!7.67e-09!309;UBERON:0003056!7.96e-09!61;UBERON:0000025!8.19e-09!194;UBERON:0002619!1.36e-08!22;UBERON:0000477!1.65e-08!286;UBERON:0004111!1.70e-08!241;UBERON:0001950!2.88e-07!20;UBERON:0000468!8.97e-07!659|ontology_enrichment_uberon_v019=UBERON:0002619;1.09e-09;22!UBERON:0002791;9.93e-09;32!UBERON:0001869;2.29e-08;32!UBERON:0000956;2.51e-08;25!UBERON:0000203;2.51e-08;25!UBERON:0003528;9.36e-08;34!UBERON:0002020;9.36e-08;34!UBERON:0001893;2.62e-07;34!UBERON:0001954;8.93e-07;2!UBERON:0003022;8.93e-07;2!UBERON:0002421;8.93e-07;2!UBERON:0002600;8.93e-07;2!UBERON:0001950;9.45e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.34e-09,22;UBERON:0002791,5.47e-09,32;UBERON:0001869,5.47e-09,32;UBERON:0001017,1.15e-08,81;UBERON:0003528,2.55e-08,34;UBERON:0002020,2.55e-08,34;UBERON:0001893,2.55e-08,34;UBERON:0000956,3.01e-08,25;UBERON:0000203,3.01e-08,25;UBERON:0001016,2.50e-07,89;UBERON:0001049,6.90e-07,56;UBERON:0005068,6.90e-07,56;UBERON:0006241,6.90e-07,56;UBERON:0007135,6.90e-07,56;UBERON:0001954,9.83e-07,2;UBERON:0003022,9.83e-07,2;UBERON:0002421,9.83e-07,2;UBERON:0002600,9.83e-07,2|phase1_expression=0.54503513781167,0.856402095563933,0,1.0007329835313,0.446961094427288,1.74467704820074,0,0,0,0,0,0,0,0.990130823680373,1.98838425436749,1.34465029290355,1.20538905604795,1.46062018077475,0.487932798790507,0.61560529038394,0.612002073732759,0,0.85870796139317,0.684372125364421,0.627713197974014,0.0764134057479513,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.50668955317945,1.88300474649071,0.795285947051099,1.94653948121054,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.208994966536811,0.258416759169329,0,0,0.805658634218294,0,0.488124115096339,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,1.2663051166458,0.264818361626438,2.0078563452417,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.622422070799533,0.269421344139376,0,0.605429710579726,0.576175924479999,0.234321431833797,0.624320153660641,0,0.597794722207204,0.23486899728753,0.323745888736263,0,0.61246251376468,0.368502951935304,0.619954687054593,2.37600571456411,1.23633464639278,0,0,0.336672227908132,0.125118519871964,0,0,0.919463387397059,1.35214253015937,0.453728732640084,0.89694817844431,0.427114777637135,0.423863802319124,0.900273288253207,0.618315175430633,1.03056216018252,0.37223371266318,1.18143432568886,0.292311015483596,0.252433774244115,0.828449087780694,1.2931684545505,1.06502877754984,0.503760491138201,0.339121184620975,0.193260853163297,0,0.286804595389004,0.121973706129595,0,0,0.310983165046111,0,0,0,1.92972281457866,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0.253991577168676,0.763976851116555,0,3.4214489204541,1.13110241973656,1.2013722313756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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5098 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=8716 | |||
|TSSclassifier=N | |||
|UniProt=Q9BT64 | |||
|association_with_transcript=324bp_to_BC004321_5end | |||
|description=CAGE_peak_4_at_PCDHGC3_5end | |||
|id=chr5:140890849..140890861,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.89e-18!180;CL:0000057!4.78e-10!75 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.28e-10;9!CL:0000447;3.28e-10;9!CL:0000499;1.42e-07;28!CL:0000138;4.44e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.93e-10,9;CL:0000447,1.93e-10,9;CL:0000499,1.19e-07,28;CL:0000058,2.69e-07,6;CL:0000138,2.69e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.09e-19!82;UBERON:0005743!1.41e-19!86;UBERON:0000073!1.66e-17!94;UBERON:0001016!1.66e-17!94;UBERON:0001049!3.64e-16!57;UBERON:0005068!3.64e-16!57;UBERON:0006241!3.64e-16!57;UBERON:0007135!3.64e-16!57;UBERON:0000955!1.31e-15!69;UBERON:0006238!1.31e-15!69;UBERON:0002616!1.85e-14!59;UBERON:0002346!7.93e-13!90;UBERON:0002020!1.28e-12!34;UBERON:0003528!1.28e-12!34;UBERON:0003080!1.49e-12!42;UBERON:0000924!1.50e-12!173;UBERON:0006601!1.50e-12!173;UBERON:0002780!4.11e-12!41;UBERON:0001890!4.11e-12!41;UBERON:0006240!4.11e-12!41;UBERON:0001893!5.51e-12!34;UBERON:0001869!6.58e-12!32;UBERON:0002791!6.70e-12!33;UBERON:0000033!7.41e-12!123;UBERON:0003075!7.78e-12!86;UBERON:0007284!7.78e-12!86;UBERON:0004121!1.13e-11!169;UBERON:0000475!2.24e-11!365;UBERON:0000153!5.66e-11!129;UBERON:0007811!5.66e-11!129;UBERON:0000956!6.30e-10!25;UBERON:0000203!6.30e-10!25;UBERON:0000119!2.54e-09!312;UBERON:0000483!7.67e-09!309;UBERON:0003056!7.96e-09!61;UBERON:0000025!8.19e-09!194;UBERON:0002619!1.36e-08!22;UBERON:0000477!1.65e-08!286;UBERON:0004111!1.70e-08!241;UBERON:0001950!2.88e-07!20;UBERON:0000468!8.97e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.09e-09;22!UBERON:0002791;9.93e-09;32!UBERON:0001869;2.29e-08;32!UBERON:0000956;2.51e-08;25!UBERON:0000203;2.51e-08;25!UBERON:0003528;9.36e-08;34!UBERON:0002020;9.36e-08;34!UBERON:0001893;2.62e-07;34!UBERON:0001954;8.93e-07;2!UBERON:0003022;8.93e-07;2!UBERON:0002421;8.93e-07;2!UBERON:0002600;8.93e-07;2!UBERON:0001950;9.45e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.34e-09,22;UBERON:0002791,5.47e-09,32;UBERON:0001869,5.47e-09,32;UBERON:0001017,1.15e-08,81;UBERON:0003528,2.55e-08,34;UBERON:0002020,2.55e-08,34;UBERON:0001893,2.55e-08,34;UBERON:0000956,3.01e-08,25;UBERON:0000203,3.01e-08,25;UBERON:0001016,2.50e-07,89;UBERON:0001049,6.90e-07,56;UBERON:0005068,6.90e-07,56;UBERON:0006241,6.90e-07,56;UBERON:0007135,6.90e-07,56;UBERON:0001954,9.83e-07,2;UBERON:0003022,9.83e-07,2;UBERON:0002421,9.83e-07,2;UBERON:0002600,9.83e-07,2 | |||
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| |||
|short_description=p4@PCDHGC3 | |||
}} |
Revision as of 13:37, 13 September 2013
Short description: | p4@PCDHGC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PCDHGC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 324bp_to_BC004321_5end |
EntrezGene: | PCDHGC3 |
HGNC: | 8716 |
UniProt: | Q9BT64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.93e-10 | 9 |
carbohydrate secreting cell | 1.93e-10 | 9 |
stromal cell | 1.19e-07 | 28 |
chondroblast | 2.69e-07 | 6 |
chondrocyte | 2.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.34e-09 | 22 |
regional part of telencephalon | 5.47e-09 | 32 |
cerebral hemisphere | 5.47e-09 | 32 |
central nervous system | 1.15e-08 | 81 |
brain grey matter | 2.55e-08 | 34 |
gray matter | 2.55e-08 | 34 |
telencephalon | 2.55e-08 | 34 |
cerebral cortex | 3.01e-08 | 25 |
pallium | 3.01e-08 | 25 |
nervous system | 2.50e-07 | 89 |
neural tube | 6.90e-07 | 56 |
neural rod | 6.90e-07 | 56 |
future spinal cord | 6.90e-07 | 56 |
neural keel | 6.90e-07 | 56 |
Ammon's horn | 9.83e-07 | 2 |
lobe parts of cerebral cortex | 9.83e-07 | 2 |
hippocampal formation | 9.83e-07 | 2 |
limbic lobe | 9.83e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.