FFCP PHASE1:Mm9::chr17:35068276..35068288,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18010|HGNC=|UniProt=|association_with_transcript=17bp_to_ENSMUST00000173269_5end|description=CAGE_peak_2_at_Neu1_5end|id=chr17:35068276..35068288,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!5.78e-12!50;UBERON:0006238!5.78e-12!50;UBERON:0002616!1.23e-11!49;UBERON:0001017!1.43e-11!73;UBERON:0005743!1.43e-11!73;UBERON:0000073!1.46e-11!75;UBERON:0001016!1.46e-11!75;UBERON:0001049!1.99e-11!52;UBERON:0005068!1.99e-11!52;UBERON:0006241!1.99e-11!52;UBERON:0007135!1.99e-11!52;UBERON:0000033!9.82e-11!63;UBERON:0004121!7.53e-10!102;UBERON:0000924!7.53e-10!102;UBERON:0006601!7.53e-10!102;UBERON:0003080!1.53e-08!40;UBERON:0002780!4.75e-08!39;UBERON:0001890!4.75e-08!39;UBERON:0006240!4.75e-08!39;UBERON:0007811!4.83e-08!86;UBERON:0002346!8.36e-08!71;UBERON:0003075!8.36e-08!71;UBERON:0007284!8.36e-08!71;UBERON:0002020!2.05e-07!34;UBERON:0002791!4.11e-07!29;UBERON:0003528!4.11e-07!29;UBERON:0001893!4.11e-07!29;UBERON:0003056!4.58e-07!49;UBERON:0000064!5.92e-07!99;UBERON:0000153!6.37e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.19e-15,73;UBERON:0001016,9.59e-15,75;UBERON:0000073,5.43e-14,54;UBERON:0001049,2.81e-13,52;UBERON:0005068,2.81e-13,52;UBERON:0006241,2.81e-13,52;UBERON:0007135,2.81e-13,52;UBERON:0000955,1.77e-12,47;UBERON:0006238,1.77e-12,47;UBERON:0004121,1.77e-12,95;UBERON:0000924,1.77e-12,95;UBERON:0006601,1.77e-12,95;UBERON:0002616,4.40e-12,46;UBERON:0002346,9.91e-11,64;UBERON:0003075,9.91e-11,64;UBERON:0007284,9.91e-11,64;UBERON:0010371,3.46e-10,73;UBERON:0003080,1.75e-09,40;UBERON:0002780,6.89e-09,39;UBERON:0001890,6.89e-09,39;UBERON:0006240,6.89e-09,39;UBERON:0002020,1.83e-08,34;UBERON:0003528,7.50e-08,29;UBERON:0002791,7.50e-08,29;UBERON:0001893,7.50e-08,29;UBERON:0003056,1.10e-07,49;UBERON:0002021,5.69e-07,10;UBERON:0000411,5.69e-07,10;UBERON:0001950,5.69e-07,10;UBERON:0010314,6.65e-07,92|phase1_expression=1.92178616525753,1.04692622291808,2.27499619694768,2.41971369045464,2.00358291978539,0.671517087647559,0,3.74457637980571,0.703943610758334,0.468129052643987,2.22583358693156,3.03134204182278,2.9104124088305,3.4968160967599,0,1.41732687172878,0.699561878128147,2.20823515750766,1.37114433605739,2.54633791078818,1.10556277196391,0.595745707205312,0.522399578277871,1.27993938234725,0.45881856213434,1.14846392823004,0.86152399231815,1.29282739611533,2.47030445293286,0.252030129759931,3.76941868114018,0,0.61506478758457,0,0.866554859253824,0.498703936075477,1.22501613757421,0.837063261473815,0.7813353445238,1.57057123192139,1.17646297606203,1.36609096991689,0.485510353031154,2.39203954153597,1.52065396829272,0.734187008646726,1.56478268869608,1.52617609466313,0.878744730937887,0.972149495371417,0.279972843250725,1.43752564364972,4.02678254538567,2.90144856804538,1.68046899571232,1.28629718017973,1.14613375975503,2.06268836910977,1.82084814773638,2.64495489636016,0.633831403506179,0.677689064138264,0,1.7997994345628,0.988866362566974,2.8419204597844,1.19840044207362,1.92109152660777,1.03689612308478,1.08004750665353,1.05162480675691,2.28520787523043,1.10434270475807,0.734944795289724,1.0543001812006,0,1.10115880999389,2.17068474744819,2.76491759861238,1.31886287730194,1.18933936683133,1.04182674111352,2.23346399201105,2.8138130501584,2.44477196442896,1.17851434189467,2.13557521198654,0.372798891650601,1.13589289999776,0.831287161174641,2.02905142091174,0,0,0.539703191637817,0.649776417447669,0,1.12355536105401,1.1930122580464,1.29893002301434,0,1.40843419776681,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,0.91347103775248,1.29468941823586,0.742210695324124,0.693941307064543,0.304465478312141,0.461230994512117,0.904335843315735,0.823120949949934,1.0053327306374,1.48316980640624,0.722996784599558,1.76922110389975,0.485300549842228,0.883366073841574,0.969750506270444,0,3.22058876712702,3.14170060220183,1.27728527604296,0.11981512450592,0.599902730993408,0.381210681219194,2.84602214869163,2.74500361691176,1.25654352112864,2.08589184230732,3.3243009452943,1.24672826735736,2.59586020908412,1.2220723662038,0.995255764880744,2.77995034277042,1.47309299120532,0.650602214813519,0.459804208866946,0.900310649026746,0.60281927134286,0.272145996605311,0.512454881139399,1.40552586839593,1.55222022443409,0,0.567318240503458,1.40760899331159,0.43839146485515,0.278047249225598,0.348252166522167,1.85203922767149,0.59710280045548,1.40442637462647,0,0.852490498186778,0.621377317606506,0.469052119962192,0.540186184383045,1.89395788468168,0.787056926989615,0.154267112887378,0.232533944750408,0.804820204198858,0.934122738937356,0.658239399653922,0.820837320395476,0.648550476366846,1.31579988682799,0,0.536825675041487,3.15434922846191,1.13195073617213,0.660837565967596,0.528901133327089,0.853153002140936,0.464473343720877,0.902072229254653,0.201683524623343,0.667134131534611,1.52180500890047,0.949058123089023,1.81168850196412,0.754005626400808,2.78539060857611,2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| ||
|EntrezGene=18010 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=17bp_to_ENSMUST00000173269_5end | |||
|description=CAGE_peak_2_at_Neu1_5end | |||
|id=chr17:35068276..35068288,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!5.78e-12!50;UBERON:0006238!5.78e-12!50;UBERON:0002616!1.23e-11!49;UBERON:0001017!1.43e-11!73;UBERON:0005743!1.43e-11!73;UBERON:0000073!1.46e-11!75;UBERON:0001016!1.46e-11!75;UBERON:0001049!1.99e-11!52;UBERON:0005068!1.99e-11!52;UBERON:0006241!1.99e-11!52;UBERON:0007135!1.99e-11!52;UBERON:0000033!9.82e-11!63;UBERON:0004121!7.53e-10!102;UBERON:0000924!7.53e-10!102;UBERON:0006601!7.53e-10!102;UBERON:0003080!1.53e-08!40;UBERON:0002780!4.75e-08!39;UBERON:0001890!4.75e-08!39;UBERON:0006240!4.75e-08!39;UBERON:0007811!4.83e-08!86;UBERON:0002346!8.36e-08!71;UBERON:0003075!8.36e-08!71;UBERON:0007284!8.36e-08!71;UBERON:0002020!2.05e-07!34;UBERON:0002791!4.11e-07!29;UBERON:0003528!4.11e-07!29;UBERON:0001893!4.11e-07!29;UBERON:0003056!4.58e-07!49;UBERON:0000064!5.92e-07!99;UBERON:0000153!6.37e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.19e-15,73;UBERON:0001016,9.59e-15,75;UBERON:0000073,5.43e-14,54;UBERON:0001049,2.81e-13,52;UBERON:0005068,2.81e-13,52;UBERON:0006241,2.81e-13,52;UBERON:0007135,2.81e-13,52;UBERON:0000955,1.77e-12,47;UBERON:0006238,1.77e-12,47;UBERON:0004121,1.77e-12,95;UBERON:0000924,1.77e-12,95;UBERON:0006601,1.77e-12,95;UBERON:0002616,4.40e-12,46;UBERON:0002346,9.91e-11,64;UBERON:0003075,9.91e-11,64;UBERON:0007284,9.91e-11,64;UBERON:0010371,3.46e-10,73;UBERON:0003080,1.75e-09,40;UBERON:0002780,6.89e-09,39;UBERON:0001890,6.89e-09,39;UBERON:0006240,6.89e-09,39;UBERON:0002020,1.83e-08,34;UBERON:0003528,7.50e-08,29;UBERON:0002791,7.50e-08,29;UBERON:0001893,7.50e-08,29;UBERON:0003056,1.10e-07,49;UBERON:0002021,5.69e-07,10;UBERON:0000411,5.69e-07,10;UBERON:0001950,5.69e-07,10;UBERON:0010314,6.65e-07,92 | |||
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| |||
|short_description=p2@Neu1 | |||
}} |
Revision as of 14:18, 13 September 2013
Short description: | p2@Neu1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Neu1_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_ENSMUST00000173269_5end |
EntrezGene: | Neu1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.19e-15 | 73 |
nervous system | 9.59e-15 | 75 |
regional part of nervous system | 5.43e-14 | 54 |
neural tube | 2.81e-13 | 52 |
neural rod | 2.81e-13 | 52 |
future spinal cord | 2.81e-13 | 52 |
neural keel | 2.81e-13 | 52 |
brain | 1.77e-12 | 47 |
future brain | 1.77e-12 | 47 |
ectoderm-derived structure | 1.77e-12 | 95 |
ectoderm | 1.77e-12 | 95 |
presumptive ectoderm | 1.77e-12 | 95 |
regional part of brain | 4.40e-12 | 46 |
neurectoderm | 9.91e-11 | 64 |
neural plate | 9.91e-11 | 64 |
presumptive neural plate | 9.91e-11 | 64 |
ecto-epithelium | 3.46e-10 | 73 |
anterior neural tube | 1.75e-09 | 40 |
regional part of forebrain | 6.89e-09 | 39 |
forebrain | 6.89e-09 | 39 |
future forebrain | 6.89e-09 | 39 |
gray matter | 1.83e-08 | 34 |
brain grey matter | 7.50e-08 | 29 |
regional part of telencephalon | 7.50e-08 | 29 |
telencephalon | 7.50e-08 | 29 |
pre-chordal neural plate | 1.10e-07 | 49 |
occipital lobe | 5.69e-07 | 10 |
visual cortex | 5.69e-07 | 10 |
neocortex | 5.69e-07 | 10 |
structure with developmental contribution from neural crest | 6.65e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.