FFCP PHASE1:Mm9::chr2:136539243..136539264,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20614|HGNC=|MCL_coexpression_id=1|UniProt=P60879|association_with_transcript=29bp_to_ENSMUST00000110098_5end|description=CAGE_peak_2_at_Snap25_5end|id=chr2:136539243..136539264,+|ontology_enrichment_celltype=CL:0000540!2.26e-13!33;CL:0000047!2.26e-13!33;CL:0000031!2.26e-13!33;CL:0000404!2.26e-13!33;CL:0000117!4.56e-12!23;CL:0000337!4.56e-12!23;CL:0000393!6.23e-09!39;CL:0000211!6.23e-09!39;CL:0000221!1.05e-08!44;CL:0000133!1.05e-08!44;CL:0002319!1.63e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,2.63e-14,33;CL:0000047,2.63e-14,33;CL:0000031,2.63e-14,33;CL:0000404,2.63e-14,33;CL:0000117,1.64e-13,23;CL:0000337,1.64e-13,23;CL:0000393,3.49e-10,39;CL:0000211,3.49e-10,39;CL:0000221,4.99e-10,44;CL:0000133,4.99e-10,44;CL:0002319,8.27e-10,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.94e-29!71;UBERON:0003075!2.94e-29!71;UBERON:0007284!2.94e-29!71;UBERON:0004121!6.30e-27!102;UBERON:0000924!6.30e-27!102;UBERON:0006601!6.30e-27!102;UBERON:0000073!1.16e-25!75;UBERON:0001016!1.16e-25!75;UBERON:0001017!1.60e-25!73;UBERON:0005743!1.60e-25!73;UBERON:0000033!4.28e-25!63;UBERON:0001049!8.26e-22!52;UBERON:0005068!8.26e-22!52;UBERON:0006241!8.26e-22!52;UBERON:0007135!8.26e-22!52;UBERON:0003056!4.65e-21!49;UBERON:0000955!7.60e-21!50;UBERON:0006238!7.60e-21!50;UBERON:0002616!4.27e-20!49;UBERON:0003080!4.63e-17!40;UBERON:0002020!1.53e-16!34;UBERON:0002780!2.36e-16!39;UBERON:0001890!2.36e-16!39;UBERON:0006240!2.36e-16!39;UBERON:0002791!9.34e-14!29;UBERON:0003528!9.34e-14!29;UBERON:0001893!9.34e-14!29;UBERON:0007811!1.67e-11!86;UBERON:0000956!1.81e-09!21;UBERON:0001869!1.81e-09!21;UBERON:0000203!1.81e-09!21;UBERON:0000153!1.14e-08!94;UBERON:0002021!5.03e-08!10;UBERON:0000411!5.03e-08!10;UBERON:0001950!5.03e-08!10;UBERON:0002619!1.12e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.20e-29,64;UBERON:0003075,1.20e-29,64;UBERON:0007284,1.20e-29,64;UBERON:0001016,8.25e-29,75;UBERON:0001017,1.20e-28,73;UBERON:0004121,1.06e-26,95;UBERON:0000924,1.06e-26,95;UBERON:0006601,1.06e-26,95;UBERON:0000073,4.69e-26,54;UBERON:0001049,1.30e-24,52;UBERON:0005068,1.30e-24,52;UBERON:0006241,1.30e-24,52;UBERON:0007135,1.30e-24,52;UBERON:0010371,1.44e-24,73;UBERON:0003056,1.03e-22,49;UBERON:0000955,2.95e-21,47;UBERON:0006238,2.95e-21,47;UBERON:0002616,2.00e-20,46;UBERON:0010314,4.86e-20,92;UBERON:0002020,5.58e-19,34;UBERON:0003080,7.52e-19,40;UBERON:0002780,4.74e-18,39;UBERON:0001890,4.74e-18,39;UBERON:0006240,4.74e-18,39;UBERON:0003528,8.47e-16,29;UBERON:0002791,8.47e-16,29;UBERON:0001893,8.47e-16,29;UBERON:0000956,6.67e-11,21;UBERON:0001869,6.67e-11,21;UBERON:0000203,6.67e-11,21;UBERON:0002021,6.48e-09,10;UBERON:0000411,6.48e-09,10;UBERON:0001950,6.48e-09,10;UBERON:0002619,7.40e-09,17|phase1_expression=4.32401887182944,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,100.606212248716,0,0,0.159992422793407,0,0,0,0,0.380046838912748,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,12.9482534950143,12.1667925232568,12.6766280701236,0,0,0,0,0,0,0,10.6800300677732,8.10035629990144,12.4091727197315,56.5588949119531,54.9962666969518,8.81933754347669,8.62609239164127,7.35375029288017,262.075796778545,339.776006644685,347.611584758879,11.0784481693363,17.6571152152651,14.5855743755893,276.111986012366,155.322480368744,234.392512089627,79.5497180778903,77.7349377163102,41.9398753106926,1.4387976733305,3.77857800533928,0,0,0,1.07940638327563,0,0,27.5271063458234,0,0,0,5.49289337129054,0,0,0,0,0,0,15.8715592809493,0,12.6175818205101,5.20455980298408,10.9607572192371,4.38169444786511,8.28974523039424,10.347806227942,3.51866455723091,0,0.86759614151947,0,0,0,0,1.86391761218122,630.357055965861,473.559004105222,0.255457055208591,0,0,0,493.709947478296,465.278113066543,43.2250971268254,739.274833777752,645.170098844424,473.133377462118,350.441128226357,0.305518091550949,0,0,50.0851617009808,0.650602214813519,8.27647575960503,11.7040384373477,25.1677045785644,42.3187024721259,44.327347218558,46.1949502079463,172.037741541445,0.215567992932842,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0,0.219550115291051,0.134206418760372,433.61787393923,38.6921342546109,0,1.05780226665418,0.639864751605702,1.16118335930219,1.41754207454303,1.61346819698674,2.66853652613844,3.04361001780095,2.37264530772256,2.14108641141214,2.76468729680296,2.98434708061726,3.31438948102504,0.898819408654221,1.51296634912286,1.59313018603494,0.189667900953082,2.17072173958485,0,0.203651327845314,0,0.420814919341911,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0.189491411770485,0.325929952884052,0.169745085775188,0.234690248288502,0.335012514883631,0.238043640886014,0.780534591431195,0,0.221464689648775,0.478364305972461,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,616.193164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| ||
|EntrezGene=20614 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P60879 | |||
|association_with_transcript=29bp_to_ENSMUST00000110098_5end | |||
|description=CAGE_peak_2_at_Snap25_5end | |||
|id=chr2:136539243..136539264,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.26e-13!33;CL:0000047!2.26e-13!33;CL:0000031!2.26e-13!33;CL:0000404!2.26e-13!33;CL:0000117!4.56e-12!23;CL:0000337!4.56e-12!23;CL:0000393!6.23e-09!39;CL:0000211!6.23e-09!39;CL:0000221!1.05e-08!44;CL:0000133!1.05e-08!44;CL:0002319!1.63e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.63e-14,33;CL:0000047,2.63e-14,33;CL:0000031,2.63e-14,33;CL:0000404,2.63e-14,33;CL:0000117,1.64e-13,23;CL:0000337,1.64e-13,23;CL:0000393,3.49e-10,39;CL:0000211,3.49e-10,39;CL:0000221,4.99e-10,44;CL:0000133,4.99e-10,44;CL:0002319,8.27e-10,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.94e-29!71;UBERON:0003075!2.94e-29!71;UBERON:0007284!2.94e-29!71;UBERON:0004121!6.30e-27!102;UBERON:0000924!6.30e-27!102;UBERON:0006601!6.30e-27!102;UBERON:0000073!1.16e-25!75;UBERON:0001016!1.16e-25!75;UBERON:0001017!1.60e-25!73;UBERON:0005743!1.60e-25!73;UBERON:0000033!4.28e-25!63;UBERON:0001049!8.26e-22!52;UBERON:0005068!8.26e-22!52;UBERON:0006241!8.26e-22!52;UBERON:0007135!8.26e-22!52;UBERON:0003056!4.65e-21!49;UBERON:0000955!7.60e-21!50;UBERON:0006238!7.60e-21!50;UBERON:0002616!4.27e-20!49;UBERON:0003080!4.63e-17!40;UBERON:0002020!1.53e-16!34;UBERON:0002780!2.36e-16!39;UBERON:0001890!2.36e-16!39;UBERON:0006240!2.36e-16!39;UBERON:0002791!9.34e-14!29;UBERON:0003528!9.34e-14!29;UBERON:0001893!9.34e-14!29;UBERON:0007811!1.67e-11!86;UBERON:0000956!1.81e-09!21;UBERON:0001869!1.81e-09!21;UBERON:0000203!1.81e-09!21;UBERON:0000153!1.14e-08!94;UBERON:0002021!5.03e-08!10;UBERON:0000411!5.03e-08!10;UBERON:0001950!5.03e-08!10;UBERON:0002619!1.12e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.20e-29,64;UBERON:0003075,1.20e-29,64;UBERON:0007284,1.20e-29,64;UBERON:0001016,8.25e-29,75;UBERON:0001017,1.20e-28,73;UBERON:0004121,1.06e-26,95;UBERON:0000924,1.06e-26,95;UBERON:0006601,1.06e-26,95;UBERON:0000073,4.69e-26,54;UBERON:0001049,1.30e-24,52;UBERON:0005068,1.30e-24,52;UBERON:0006241,1.30e-24,52;UBERON:0007135,1.30e-24,52;UBERON:0010371,1.44e-24,73;UBERON:0003056,1.03e-22,49;UBERON:0000955,2.95e-21,47;UBERON:0006238,2.95e-21,47;UBERON:0002616,2.00e-20,46;UBERON:0010314,4.86e-20,92;UBERON:0002020,5.58e-19,34;UBERON:0003080,7.52e-19,40;UBERON:0002780,4.74e-18,39;UBERON:0001890,4.74e-18,39;UBERON:0006240,4.74e-18,39;UBERON:0003528,8.47e-16,29;UBERON:0002791,8.47e-16,29;UBERON:0001893,8.47e-16,29;UBERON:0000956,6.67e-11,21;UBERON:0001869,6.67e-11,21;UBERON:0000203,6.67e-11,21;UBERON:0002021,6.48e-09,10;UBERON:0000411,6.48e-09,10;UBERON:0001950,6.48e-09,10;UBERON:0002619,7.40e-09,17 | |||
|phase1_expression=4.32401887182944,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,100.606212248716,0,0,0.159992422793407,0,0,0,0,0.380046838912748,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43752564364972,0,0,0,0,0,0,12.9482534950143,12.1667925232568,12.6766280701236,0,0,0,0,0,0,0,10.6800300677732,8.10035629990144,12.4091727197315,56.5588949119531,54.9962666969518,8.81933754347669,8.62609239164127,7.35375029288017,262.075796778545,339.776006644685,347.611584758879,11.0784481693363,17.6571152152651,14.5855743755893,276.111986012366,155.322480368744,234.392512089627,79.5497180778903,77.7349377163102,41.9398753106926,1.4387976733305,3.77857800533928,0,0,0,1.07940638327563,0,0,27.5271063458234,0,0,0,5.49289337129054,0,0,0,0,0,0,15.8715592809493,0,12.6175818205101,5.20455980298408,10.9607572192371,4.38169444786511,8.28974523039424,10.347806227942,3.51866455723091,0,0.86759614151947,0,0,0,0,1.86391761218122,630.357055965861,473.559004105222,0.255457055208591,0,0,0,493.709947478296,465.278113066543,43.2250971268254,739.274833777752,645.170098844424,473.133377462118,350.441128226357,0.305518091550949,0,0,50.0851617009808,0.650602214813519,8.27647575960503,11.7040384373477,25.1677045785644,42.3187024721259,44.327347218558,46.1949502079463,172.037741541445,0.215567992932842,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0.180062061461015,0.23674473558521,0.196764231747404,0,0,0,0.233530684734339,0.329119699826961,0.164167464079095,0.0810688095458557,0,0.219550115291051,0.134206418760372,433.61787393923,38.6921342546109,0,1.05780226665418,0.639864751605702,1.16118335930219,1.41754207454303,1.61346819698674,2.66853652613844,3.04361001780095,2.37264530772256,2.14108641141214,2.76468729680296,2.98434708061726,3.31438948102504,0.898819408654221,1.51296634912286,1.59313018603494,0.189667900953082,2.17072173958485,0,0.203651327845314,0,0.420814919341911,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0.189491411770485,0.325929952884052,0.169745085775188,0.234690248288502,0.335012514883631,0.238043640886014,0.780534591431195,0,0.221464689648775,0.478364305972461,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,616.193164373146,531.086151949273,0,0.252470927204373,3.47059041357882,8.58965237452605,7.53981892064796,0.955875191810208,2.00518806674155,1.98153571552183,7.69140333182299,9.05993159525067,9.48690667071656,538.213205006527,0,0.178065603667255,0,0,0,0.728341908464944,0.604647113929502,1.32023555829129,0,2.45948118355142,4.13485269069154,0.727067458955011,1.42598951353889,1.58018378967908,2.10837217149998,1.03135543248187,82.0459449866629,1.8006109403131,0.776152102696527,1.50035924522115,7.09360934569094,4.99432689285798,12.9993726275676,7.91608867697958,0,0,8.38007912608855,0,0,0,0,0,2.91480836629851,541.071031266667,0,0,0,0,0,0,0,0,0,5.72802370809068,0.158167996790568,1.21991680276109,2.05210147561422,2.92723614420256,2.62035076495413,4.31565908431426,4.21532624199213,1.83229159388821,1.42576470620972,0.621339313086926,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0.205421914329655,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0.906921534460845,0,0.0897138566094757,0,5.40930863290133,0,0,0.643105137237198,0,306.660250541067,280.338069032871,283.010383639062,337.175943758315,471.336773602202,500.070760071982,420.539017644415,463.830839320947,559.630875095493,588.175714150067,3.84013186061454,3.19219898720825,4.60980735536162,4.61902762429759,9.22297915563122,8.08911437180062,10.0011027510727,8.03536723231687,9.62757628775446,6.82282471762253,10.8996098952803,8.48818536237343,7.77224512000024,9.28364709870604,9.01736862603128,9.0495801343784,9.15486174964358,6.17309505483856,8.24171801606613,5.2991611248383,11.3146853287187,7.63145966485151,8.58370283810355,9.01147783120437,7.34053167239579,7.95377314181759,4.93905526756486,8.15516105457313,8.01244271690584,7.2948495315506,7.94854621431967,6.99381824866501,4.50154147486658,7.90177890048427,5.20847849649082,8.74337022782811,7.25187986180766,7.30561583764214,4.20834330551455,3.75005412503176,6.4922993973718 | |||
|short_description=p2@Snap25 | |||
}} |
Revision as of 22:12, 13 September 2013
Short description: | p2@Snap25 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Snap25_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 29bp_to_ENSMUST00000110098_5end |
EntrezGene: | Snap25 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.63e-14 | 33 |
neuronal stem cell | 2.63e-14 | 33 |
neuroblast | 2.63e-14 | 33 |
electrically signaling cell | 2.63e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.64e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.64e-13 | 23 |
electrically responsive cell | 3.49e-10 | 39 |
electrically active cell | 3.49e-10 | 39 |
ectodermal cell | 4.99e-10 | 44 |
neurectodermal cell | 4.99e-10 | 44 |
neural cell | 8.27e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.20e-29 | 64 |
neural plate | 1.20e-29 | 64 |
presumptive neural plate | 1.20e-29 | 64 |
nervous system | 8.25e-29 | 75 |
central nervous system | 1.20e-28 | 73 |
ectoderm-derived structure | 1.06e-26 | 95 |
ectoderm | 1.06e-26 | 95 |
presumptive ectoderm | 1.06e-26 | 95 |
regional part of nervous system | 4.69e-26 | 54 |
neural tube | 1.30e-24 | 52 |
neural rod | 1.30e-24 | 52 |
future spinal cord | 1.30e-24 | 52 |
neural keel | 1.30e-24 | 52 |
ecto-epithelium | 1.44e-24 | 73 |
pre-chordal neural plate | 1.03e-22 | 49 |
brain | 2.95e-21 | 47 |
future brain | 2.95e-21 | 47 |
regional part of brain | 2.00e-20 | 46 |
structure with developmental contribution from neural crest | 4.86e-20 | 92 |
gray matter | 5.58e-19 | 34 |
anterior neural tube | 7.52e-19 | 40 |
regional part of forebrain | 4.74e-18 | 39 |
forebrain | 4.74e-18 | 39 |
future forebrain | 4.74e-18 | 39 |
brain grey matter | 8.47e-16 | 29 |
regional part of telencephalon | 8.47e-16 | 29 |
telencephalon | 8.47e-16 | 29 |
cerebral cortex | 6.67e-11 | 21 |
cerebral hemisphere | 6.67e-11 | 21 |
pallium | 6.67e-11 | 21 |
occipital lobe | 6.48e-09 | 10 |
visual cortex | 6.48e-09 | 10 |
neocortex | 6.48e-09 | 10 |
regional part of cerebral cortex | 7.40e-09 | 17 |
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