FFCP PHASE1:Mm9::chr4:134409143..134409187,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66146|HGNC=|MCL_coexpression_id=22|UniProt=E0CZE6|association_with_transcript=0bp_to_ENSMUST00000148595_5end|description=CAGE_peak_2_at_Tmem57_5end|id=chr4:134409143..134409187,-|ontology_enrichment_celltype=CL:0000540!2.95e-14!33;CL:0000047!2.95e-14!33;CL:0000031!2.95e-14!33;CL:0000404!2.95e-14!33;CL:0000117!3.98e-11!23;CL:0000337!3.98e-11!23;CL:0000393!3.86e-10!39;CL:0000211!3.86e-10!39;CL:0000221!8.89e-09!44;CL:0000133!8.89e-09!44;CL:0002319!1.89e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,2.83e-14,33;CL:0000047,2.83e-14,33;CL:0000031,2.83e-14,33;CL:0000404,2.83e-14,33;CL:0000117,3.85e-11,23;CL:0000337,3.85e-11,23;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0000221,7.63e-09,44;CL:0000133,7.63e-09,44;CL:0002319,1.63e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.18e-20!75;UBERON:0001016!2.18e-20!75;UBERON:0001017!3.32e-20!73;UBERON:0005743!3.32e-20!73;UBERON:0004121!2.34e-19!102;UBERON:0000924!2.34e-19!102;UBERON:0006601!2.34e-19!102;UBERON:0003056!2.70e-19!49;UBERON:0002346!8.78e-19!71;UBERON:0003075!8.78e-19!71;UBERON:0007284!8.78e-19!71;UBERON:0000033!2.07e-18!63;UBERON:0003080!8.15e-17!40;UBERON:0002780!2.05e-16!39;UBERON:0001890!2.05e-16!39;UBERON:0006240!2.05e-16!39;UBERON:0001049!2.06e-16!52;UBERON:0005068!2.06e-16!52;UBERON:0006241!2.06e-16!52;UBERON:0007135!2.06e-16!52;UBERON:0000955!1.31e-15!50;UBERON:0006238!1.31e-15!50;UBERON:0002616!4.93e-15!49;UBERON:0002020!1.64e-14!34;UBERON:0002791!1.17e-12!29;UBERON:0003528!1.17e-12!29;UBERON:0001893!1.17e-12!29;UBERON:0000153!2.89e-11!94;UBERON:0007811!2.55e-10!86;UBERON:0000956!9.32e-10!21;UBERON:0001869!9.32e-10!21;UBERON:0000203!9.32e-10!21;UBERON:0000468!7.13e-08!333;UBERON:0002619!2.01e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.03e-21,64;UBERON:0003075,9.03e-21,64;UBERON:0007284,9.03e-21,64;UBERON:0004121,1.40e-20,95;UBERON:0000924,1.40e-20,95;UBERON:0006601,1.40e-20,95;UBERON:0001016,1.73e-20,75;UBERON:0001017,2.64e-20,73;UBERON:0003056,2.54e-19,49;UBERON:0010371,1.02e-18,73;UBERON:0000073,4.21e-17,54;UBERON:0003080,7.74e-17,40;UBERON:0001049,1.65e-16,52;UBERON:0005068,1.65e-16,52;UBERON:0006241,1.65e-16,52;UBERON:0007135,1.65e-16,52;UBERON:0002780,1.95e-16,39;UBERON:0001890,1.95e-16,39;UBERON:0006240,1.95e-16,39;UBERON:0010314,1.41e-15,92;UBERON:0000955,4.53e-15,47;UBERON:0006238,4.53e-15,47;UBERON:0002020,1.57e-14,34;UBERON:0002616,1.70e-14,46;UBERON:0003528,1.13e-12,29;UBERON:0002791,1.13e-12,29;UBERON:0001893,1.13e-12,29;UBERON:0000956,9.07e-10,21;UBERON:0001869,9.07e-10,21;UBERON:0000203,9.07e-10,21;UBERON:0002619,1.97e-07,17|phase1_expression=7.04654927261093,0,0,0,1.00179145989269,2.18243053485457,0.934450562382103,0.645616617207881,9.15126693985834,8.89445200023575,1.19852577757853,2.31339261086476,0.684802919724823,0.699363219351979,1.66554880907831,0.809901069559304,0.699561878128147,1.26184866143295,1.23402990245165,2.12194825899015,5.6128571499706,2.18440092641948,1.82839852397255,0.95995453676044,0.68822784320151,1.14846392823004,0,1.07735616342945,0.760093677825496,1.51218077855958,0.886922042621219,0.635030673459631,1.84519436275371,0,2.02196133825892,0.997407872150954,0.816677425049476,0.418531630736908,0,0.523523743973798,0,0,0,2.01434908760924,2.23029248682932,2.20256102594018,0,1.52617609466313,1.97717564461025,2.72201858703997,2.09979632438044,1.43752564364972,2.51673909086605,2.17608642603403,2.01656279485478,2.05807548828758,2.29226751951005,1.03134418455488,21.8501777728366,24.3335850465135,27.8885817542719,1.35537812827653,1.77858959222228,0.899899717281399,0,1.4209602298922,0.599200221036809,1.53687322128622,20.1157847878447,18.2258016747782,18.718921560273,5.71301968807607,7.73039893330647,18.0061474845982,23.9613677545591,24.8189072384706,7.70811166995721,6.51205424234457,5.37622866396852,30.2019598902144,25.0676143470602,21.8783615633839,6.14202597803038,3.93933827022176,6.72312290217964,8.2496003932627,8.39992916714707,21.6223357157349,6.36100023998746,4.45872204630035,2.6087803983151,1.72084775396277,2.03991400112325,2.15881276655127,3.89865850468601,0.896053774194671,1.96622188184453,0.681721290312231,1.03914401841148,0.35333957451034,7.74638808771743,1.28326477414318,2.54805239706646,0,1.73192832808971,2.28023878927589,2.02209778005913,2.2836775943812,1.29468941823586,2.67195850316685,4.68410382268567,3.34912026143355,2.53677046981664,2.56228488939458,5.52666923537813,2.51333182659351,2.22475470960936,2.31358971071859,1.76922110389975,2.75003644910596,2.87093973998512,0.969750506270444,1.86391761218122,6.44117753425404,3.97948742945565,0.510914110417183,2.63593273913025,1.19980546198682,2.41433431438823,7.9389038884556,6.8625090422794,23.4973638451056,11.8200537730748,7.67146371990992,9.55825004973976,9.40999325792994,6.31404055871961,3.35898820647251,7.07623723614289,2.10441855886474,7.80722657776222,7.81667155073808,9.18316862007281,7.08312643827861,12.5867523429957,10.1209839025031,8.90166383317424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| ||
|EntrezGene=66146 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=E0CZE6 | |||
|association_with_transcript=0bp_to_ENSMUST00000148595_5end | |||
|description=CAGE_peak_2_at_Tmem57_5end | |||
|id=chr4:134409143..134409187,- | |||
|ontology_enrichment_celltype=CL:0000540!2.95e-14!33;CL:0000047!2.95e-14!33;CL:0000031!2.95e-14!33;CL:0000404!2.95e-14!33;CL:0000117!3.98e-11!23;CL:0000337!3.98e-11!23;CL:0000393!3.86e-10!39;CL:0000211!3.86e-10!39;CL:0000221!8.89e-09!44;CL:0000133!8.89e-09!44;CL:0002319!1.89e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.83e-14,33;CL:0000047,2.83e-14,33;CL:0000031,2.83e-14,33;CL:0000404,2.83e-14,33;CL:0000117,3.85e-11,23;CL:0000337,3.85e-11,23;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0000221,7.63e-09,44;CL:0000133,7.63e-09,44;CL:0002319,1.63e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.18e-20!75;UBERON:0001016!2.18e-20!75;UBERON:0001017!3.32e-20!73;UBERON:0005743!3.32e-20!73;UBERON:0004121!2.34e-19!102;UBERON:0000924!2.34e-19!102;UBERON:0006601!2.34e-19!102;UBERON:0003056!2.70e-19!49;UBERON:0002346!8.78e-19!71;UBERON:0003075!8.78e-19!71;UBERON:0007284!8.78e-19!71;UBERON:0000033!2.07e-18!63;UBERON:0003080!8.15e-17!40;UBERON:0002780!2.05e-16!39;UBERON:0001890!2.05e-16!39;UBERON:0006240!2.05e-16!39;UBERON:0001049!2.06e-16!52;UBERON:0005068!2.06e-16!52;UBERON:0006241!2.06e-16!52;UBERON:0007135!2.06e-16!52;UBERON:0000955!1.31e-15!50;UBERON:0006238!1.31e-15!50;UBERON:0002616!4.93e-15!49;UBERON:0002020!1.64e-14!34;UBERON:0002791!1.17e-12!29;UBERON:0003528!1.17e-12!29;UBERON:0001893!1.17e-12!29;UBERON:0000153!2.89e-11!94;UBERON:0007811!2.55e-10!86;UBERON:0000956!9.32e-10!21;UBERON:0001869!9.32e-10!21;UBERON:0000203!9.32e-10!21;UBERON:0000468!7.13e-08!333;UBERON:0002619!2.01e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.03e-21,64;UBERON:0003075,9.03e-21,64;UBERON:0007284,9.03e-21,64;UBERON:0004121,1.40e-20,95;UBERON:0000924,1.40e-20,95;UBERON:0006601,1.40e-20,95;UBERON:0001016,1.73e-20,75;UBERON:0001017,2.64e-20,73;UBERON:0003056,2.54e-19,49;UBERON:0010371,1.02e-18,73;UBERON:0000073,4.21e-17,54;UBERON:0003080,7.74e-17,40;UBERON:0001049,1.65e-16,52;UBERON:0005068,1.65e-16,52;UBERON:0006241,1.65e-16,52;UBERON:0007135,1.65e-16,52;UBERON:0002780,1.95e-16,39;UBERON:0001890,1.95e-16,39;UBERON:0006240,1.95e-16,39;UBERON:0010314,1.41e-15,92;UBERON:0000955,4.53e-15,47;UBERON:0006238,4.53e-15,47;UBERON:0002020,1.57e-14,34;UBERON:0002616,1.70e-14,46;UBERON:0003528,1.13e-12,29;UBERON:0002791,1.13e-12,29;UBERON:0001893,1.13e-12,29;UBERON:0000956,9.07e-10,21;UBERON:0001869,9.07e-10,21;UBERON:0000203,9.07e-10,21;UBERON:0002619,1.97e-07,17 | |||
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| |||
|short_description=p2@Tmem57 | |||
}} |
Revision as of 04:05, 14 September 2013
Short description: | p2@Tmem57 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tmem57_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000148595_5end |
EntrezGene: | Tmem57 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.83e-14 | 33 |
neuronal stem cell | 2.83e-14 | 33 |
neuroblast | 2.83e-14 | 33 |
electrically signaling cell | 2.83e-14 | 33 |
CNS neuron (sensu Vertebrata) | 3.85e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.85e-11 | 23 |
electrically responsive cell | 3.75e-10 | 39 |
electrically active cell | 3.75e-10 | 39 |
ectodermal cell | 7.63e-09 | 44 |
neurectodermal cell | 7.63e-09 | 44 |
neural cell | 1.63e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.03e-21 | 64 |
neural plate | 9.03e-21 | 64 |
presumptive neural plate | 9.03e-21 | 64 |
ectoderm-derived structure | 1.40e-20 | 95 |
ectoderm | 1.40e-20 | 95 |
presumptive ectoderm | 1.40e-20 | 95 |
nervous system | 1.73e-20 | 75 |
central nervous system | 2.64e-20 | 73 |
pre-chordal neural plate | 2.54e-19 | 49 |
ecto-epithelium | 1.02e-18 | 73 |
regional part of nervous system | 4.21e-17 | 54 |
anterior neural tube | 7.74e-17 | 40 |
neural tube | 1.65e-16 | 52 |
neural rod | 1.65e-16 | 52 |
future spinal cord | 1.65e-16 | 52 |
neural keel | 1.65e-16 | 52 |
regional part of forebrain | 1.95e-16 | 39 |
forebrain | 1.95e-16 | 39 |
future forebrain | 1.95e-16 | 39 |
structure with developmental contribution from neural crest | 1.41e-15 | 92 |
brain | 4.53e-15 | 47 |
future brain | 4.53e-15 | 47 |
gray matter | 1.57e-14 | 34 |
regional part of brain | 1.70e-14 | 46 |
brain grey matter | 1.13e-12 | 29 |
regional part of telencephalon | 1.13e-12 | 29 |
telencephalon | 1.13e-12 | 29 |
cerebral cortex | 9.07e-10 | 21 |
cerebral hemisphere | 9.07e-10 | 21 |
pallium | 9.07e-10 | 21 |
regional part of cerebral cortex | 1.97e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.