FFCP PHASE1:Hg19::chr8:16425067..16425095,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4481|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7376|TSSclassifier=S|UniProt=|association_with_transcript=-68bp_to_ENST00000522130_5end|coexpression_cluster_id=C1515|description=CAGE_peak_7_at_MSR1_5end|id=chr8:16425067..16425095,-|ontology_enrichment_celltype=CL:0002139!2.96e-44!24;CL:0000115!1.37e-35!35;CL:0000071!3.58e-27!18;CL:0002546!3.58e-27!18;CL:0002078!4.20e-27!44;CL:0005020!6.49e-20!6;CL:0002138!6.49e-20!6;CL:0005022!6.49e-20!6;CL:0000213!1.32e-19!57;CL:0000215!1.32e-19!57;CL:1000413!1.09e-16!9;CL:0002544!2.77e-13!6;CL:0000222!2.39e-11!119;CL:0002144!1.04e-10!3;CL:0000076!5.56e-08!62;CL:0002545!1.20e-07!2|ontology_enrichment_celltype_v019=CL:0002139;3.67e-50;24!CL:0002138;7.86e-37;6!CL:0000115;2.10e-35;36!CL:0000071;9.76e-23;18!CL:0002078;9.75e-21;45!CL:0002545;2.89e-18;2!CL:1000413;1.82e-15;9!CL:0000213;5.02e-14;58!CL:0000215;5.02e-14;58!CL:0002544;1.74e-13;6!CL:0002573;4.61e-13;2!CL:0002144;8.58e-13;3!CL:0000222;7.54e-10;1|ontology_enrichment_celltype_v019_2=CL:0002139,5.11e-50,24;CL:0000115,1.31e-38,36;CL:0005020,7.31e-37,6;CL:0002138,7.31e-37,6;CL:0005022,7.31e-37,6;CL:0002078,1.81e-30,45;CL:0000213,3.66e-23,58;CL:0000215,3.66e-23,58;CL:0000071,1.30e-22,18;CL:0002546,1.30e-22,18;CL:0002545,4.11e-18,2;CL:1000413,2.66e-15,9;CL:0002544,2.56e-13,6;CL:0002573,4.61e-13,2;CL:0002144,8.34e-13,3;CL:0000222,1.09e-11,121;CL:0000076,9.70e-08,63;CL:0002321,4.31e-07,250|ontology_enrichment_development_v019=CL:0005022;7.86e-37;6!CL:0002546;9.76e-23;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060085;7.54e-10;1!DOID:3165;7.54e-10;1!DOID:0060121;7.54e-10;1!DOID:2438;7.54e-10;1!DOID:4418;7.54e-10;1|ontology_enrichment_disease_v019_2=DOID:0060085,5.30e-10,1;DOID:3165,5.30e-10,1;DOID:0060121,5.30e-10,1;DOID:2438,5.30e-10,1;DOID:4418,5.30e-10,1|ontology_enrichment_uberon=UBERON:0001986!3.58e-27!18;UBERON:0004638!3.58e-27!18;UBERON:0004852!3.58e-27!18;UBERON:0000487!1.22e-21!22;UBERON:0006914!1.18e-18!25;UBERON:0000055!1.88e-18!69;UBERON:0002049!7.86e-17!79;UBERON:0007798!7.86e-17!79;UBERON:0003915!1.09e-16!9;UBERON:0004700!1.09e-16!9;UBERON:0001917!1.09e-16!9;UBERON:0001473!9.81e-15!8;UBERON:0004536!9.81e-15!8;UBERON:0006558!9.81e-15!8;UBERON:0002465!1.27e-11!10;UBERON:0004535!2.24e-11!110;UBERON:0001009!6.55e-11!113;UBERON:0001981!6.80e-11!60;UBERON:0007500!6.80e-11!60;UBERON:0004537!6.80e-11!60;UBERON:0006965!6.80e-11!60;UBERON:0001915!1.04e-10!3;UBERON:0001982!1.04e-10!3;UBERON:0003914!6.46e-09!118;UBERON:0005800!1.20e-07!2;UBERON:0001515!1.20e-07!2;UBERON:0004111!1.22e-07!241;UBERON:0004872!1.49e-07!84;UBERON:0000477!2.45e-07!286|ontology_enrichment_uberon_v019=UBERON:0001473;1.26e-27;8!UBERON:0004536;1.26e-27;8!UBERON:0006558;1.26e-27;8!UBERON:0004638;9.76e-23;18!UBERON:0001986;9.76e-23;18!UBERON:0004852;9.76e-23;18!UBERON:0002465;4.28e-22;10!UBERON:0000487;1.75e-18;22!UBERON:0005800;2.89e-18;2!UBERON:0001515;2.89e-18;2!UBERON:0006914;3.50e-16;25!UBERON:0003915;1.82e-15;9!UBERON:0004700;1.82e-15;9!UBERON:0001917;1.82e-15;9!UBERON:0010523;8.58e-13;3!UBERON:0001915;8.58e-13;3!UBERON:0001982;8.58e-13;3!UBERON:0000055;1.29e-11;65!UBERON:0002405;2.55e-11;27!UBERON:0000490;5.03e-11;33!UBERON:0002049;4.56e-07;75!UBERON:0007798;4.56e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.19e-27,8;UBERON:0004536,1.19e-27,8;UBERON:0006558,1.19e-27,8;UBERON:0004638,1.30e-22,18;UBERON:0001986,1.30e-22,18;UBERON:0004852,1.30e-22,18;UBERON:0002465,4.10e-22,10;UBERON:0000487,2.21e-18,22;UBERON:0005800,4.11e-18,2;UBERON:0001515,4.11e-18,2;UBERON:0000055,2.05e-16,68;UBERON:0006914,4.28e-16,25;UBERON:0003915,2.66e-15,9;UBERON:0004700,2.66e-15,9;UBERON:0001917,2.66e-15,9;UBERON:0002049,4.67e-14,78;UBERON:0007798,4.67e-14,78;UBERON:0010523,8.34e-13,3;UBERON:0001915,8.34e-13,3;UBERON:0001982,8.34e-13,3;UBERON:0004535,1.71e-09,109;UBERON:0001009,3.48e-09,112|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,1.04142150482278,0,0,0.825354125820202,1.25396979922086,6.71883573840255,15.2979492955285,20.0832367658802,4.43112248820062,0.760272105718513,2.68468263302986,1.10298924103761,2.43042584364528,1.42879565254528,0,0.450445921933289,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,1.44366447761074,2.31492756288305,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4481 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7376 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-68bp_to_ENST00000522130_5end | |||
|coexpression_cluster_id=C1515 | |||
|description=CAGE_peak_7_at_MSR1_5end | |||
|id=chr8:16425067..16425095,- | |||
|ontology_enrichment_celltype=CL:0002139!2.96e-44!24;CL:0000115!1.37e-35!35;CL:0000071!3.58e-27!18;CL:0002546!3.58e-27!18;CL:0002078!4.20e-27!44;CL:0005020!6.49e-20!6;CL:0002138!6.49e-20!6;CL:0005022!6.49e-20!6;CL:0000213!1.32e-19!57;CL:0000215!1.32e-19!57;CL:1000413!1.09e-16!9;CL:0002544!2.77e-13!6;CL:0000222!2.39e-11!119;CL:0002144!1.04e-10!3;CL:0000076!5.56e-08!62;CL:0002545!1.20e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.67e-50;24!CL:0002138;7.86e-37;6!CL:0000115;2.10e-35;36!CL:0000071;9.76e-23;18!CL:0002078;9.75e-21;45!CL:0002545;2.89e-18;2!CL:1000413;1.82e-15;9!CL:0000213;5.02e-14;58!CL:0000215;5.02e-14;58!CL:0002544;1.74e-13;6!CL:0002573;4.61e-13;2!CL:0002144;8.58e-13;3!CL:0000222;7.54e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,5.11e-50,24;CL:0000115,1.31e-38,36;CL:0005020,7.31e-37,6;CL:0002138,7.31e-37,6;CL:0005022,7.31e-37,6;CL:0002078,1.81e-30,45;CL:0000213,3.66e-23,58;CL:0000215,3.66e-23,58;CL:0000071,1.30e-22,18;CL:0002546,1.30e-22,18;CL:0002545,4.11e-18,2;CL:1000413,2.66e-15,9;CL:0002544,2.56e-13,6;CL:0002573,4.61e-13,2;CL:0002144,8.34e-13,3;CL:0000222,1.09e-11,121;CL:0000076,9.70e-08,63;CL:0002321,4.31e-07,250 | |||
|ontology_enrichment_development_v019=CL:0005022;7.86e-37;6!CL:0002546;9.76e-23;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;7.54e-10;1!DOID:3165;7.54e-10;1!DOID:0060121;7.54e-10;1!DOID:2438;7.54e-10;1!DOID:4418;7.54e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,5.30e-10,1;DOID:3165,5.30e-10,1;DOID:0060121,5.30e-10,1;DOID:2438,5.30e-10,1;DOID:4418,5.30e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!3.58e-27!18;UBERON:0004638!3.58e-27!18;UBERON:0004852!3.58e-27!18;UBERON:0000487!1.22e-21!22;UBERON:0006914!1.18e-18!25;UBERON:0000055!1.88e-18!69;UBERON:0002049!7.86e-17!79;UBERON:0007798!7.86e-17!79;UBERON:0003915!1.09e-16!9;UBERON:0004700!1.09e-16!9;UBERON:0001917!1.09e-16!9;UBERON:0001473!9.81e-15!8;UBERON:0004536!9.81e-15!8;UBERON:0006558!9.81e-15!8;UBERON:0002465!1.27e-11!10;UBERON:0004535!2.24e-11!110;UBERON:0001009!6.55e-11!113;UBERON:0001981!6.80e-11!60;UBERON:0007500!6.80e-11!60;UBERON:0004537!6.80e-11!60;UBERON:0006965!6.80e-11!60;UBERON:0001915!1.04e-10!3;UBERON:0001982!1.04e-10!3;UBERON:0003914!6.46e-09!118;UBERON:0005800!1.20e-07!2;UBERON:0001515!1.20e-07!2;UBERON:0004111!1.22e-07!241;UBERON:0004872!1.49e-07!84;UBERON:0000477!2.45e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.26e-27;8!UBERON:0004536;1.26e-27;8!UBERON:0006558;1.26e-27;8!UBERON:0004638;9.76e-23;18!UBERON:0001986;9.76e-23;18!UBERON:0004852;9.76e-23;18!UBERON:0002465;4.28e-22;10!UBERON:0000487;1.75e-18;22!UBERON:0005800;2.89e-18;2!UBERON:0001515;2.89e-18;2!UBERON:0006914;3.50e-16;25!UBERON:0003915;1.82e-15;9!UBERON:0004700;1.82e-15;9!UBERON:0001917;1.82e-15;9!UBERON:0010523;8.58e-13;3!UBERON:0001915;8.58e-13;3!UBERON:0001982;8.58e-13;3!UBERON:0000055;1.29e-11;65!UBERON:0002405;2.55e-11;27!UBERON:0000490;5.03e-11;33!UBERON:0002049;4.56e-07;75!UBERON:0007798;4.56e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.19e-27,8;UBERON:0004536,1.19e-27,8;UBERON:0006558,1.19e-27,8;UBERON:0004638,1.30e-22,18;UBERON:0001986,1.30e-22,18;UBERON:0004852,1.30e-22,18;UBERON:0002465,4.10e-22,10;UBERON:0000487,2.21e-18,22;UBERON:0005800,4.11e-18,2;UBERON:0001515,4.11e-18,2;UBERON:0000055,2.05e-16,68;UBERON:0006914,4.28e-16,25;UBERON:0003915,2.66e-15,9;UBERON:0004700,2.66e-15,9;UBERON:0001917,2.66e-15,9;UBERON:0002049,4.67e-14,78;UBERON:0007798,4.67e-14,78;UBERON:0010523,8.34e-13,3;UBERON:0001915,8.34e-13,3;UBERON:0001982,8.34e-13,3;UBERON:0004535,1.71e-09,109;UBERON:0001009,3.48e-09,112 | |||
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|short_description=p7@MSR1 | |||
}} |
Revision as of 04:18, 14 September 2013
Short description: | p7@MSR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_MSR1_5end |
Coexpression cluster: | C1515_Endothelial_schwannoma_Renal_cerebellum_lung_heart_diaphragm |
Association with transcript: | -68bp_to_ENST00000522130_5end |
EntrezGene: | MSR1 |
HGNC: | 7376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 5.11e-50 | 24 |
endothelial cell | 1.31e-38 | 36 |
lymphangioblast | 7.31e-37 | 6 |
endothelial cell of lymphatic vessel | 7.31e-37 | 6 |
vascular lymphangioblast | 7.31e-37 | 6 |
meso-epithelial cell | 1.81e-30 | 45 |
lining cell | 3.66e-23 | 58 |
barrier cell | 3.66e-23 | 58 |
blood vessel endothelial cell | 1.30e-22 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.30e-22 | 18 |
thoracic aorta endothelial cell | 4.11e-18 | 2 |
endothelial cell of artery | 2.66e-15 | 9 |
aortic endothelial cell | 2.56e-13 | 6 |
Schwann cell | 4.61e-13 | 2 |
capillary endothelial cell | 8.34e-13 | 3 |
mesodermal cell | 1.09e-11 | 121 |
squamous epithelial cell | 9.70e-08 | 63 |
embryonic cell | 4.31e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.19e-27 | 8 |
lymph vasculature | 1.19e-27 | 8 |
lymphatic part of lymphoid system | 1.19e-27 | 8 |
blood vessel endothelium | 1.30e-22 | 18 |
endothelium | 1.30e-22 | 18 |
cardiovascular system endothelium | 1.30e-22 | 18 |
lymphoid system | 4.10e-22 | 10 |
simple squamous epithelium | 2.21e-18 | 22 |
segment of aorta | 4.11e-18 | 2 |
thoracic aorta | 4.11e-18 | 2 |
vessel | 2.05e-16 | 68 |
squamous epithelium | 4.28e-16 | 25 |
endothelial tube | 2.66e-15 | 9 |
arterial system endothelium | 2.66e-15 | 9 |
endothelium of artery | 2.66e-15 | 9 |
vasculature | 4.67e-14 | 78 |
vascular system | 4.67e-14 | 78 |
microcirculatory vessel | 8.34e-13 | 3 |
endothelium of capillary | 8.34e-13 | 3 |
capillary | 8.34e-13 | 3 |
cardiovascular system | 1.71e-09 | 109 |
circulatory system | 3.48e-09 | 112 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 5.30e-10 | 1 |
skin benign neoplasm | 5.30e-10 | 1 |
integumentary system benign neoplasm | 5.30e-10 | 1 |
dermis tumor | 5.30e-10 | 1 |
cutaneous fibrous histiocytoma | 5.30e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.