FFCP PHASE1:Mm9::chr4:77857731..77857793,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19266|HGNC=|MCL_coexpression_id=2|UniProt=|association_with_transcript=0bp_to_ENSMUST00000129550,ENSMUST00000134604,ENSMUST00000156656_5end|description=CAGE_peak_2_at_Ptprd_5end|id=chr4:77857731..77857793,-|ontology_enrichment_celltype=CL:0000540!1.42e-15!33;CL:0000047!1.42e-15!33;CL:0000031!1.42e-15!33;CL:0000404!1.42e-15!33;CL:0000117!4.55e-15!23;CL:0000337!4.55e-15!23;CL:0000393!5.94e-11!39;CL:0000211!5.94e-11!39;CL:0000221!6.82e-10!44;CL:0000133!6.82e-10!44;CL:0002319!1.23e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.62e-20,23;CL:0000337,2.62e-20,23;CL:0000540,1.81e-13,33;CL:0000047,1.81e-13,33;CL:0000031,1.81e-13,33;CL:0000404,1.81e-13,33;CL:0000393,4.08e-10,39;CL:0000211,4.08e-10,39;CL:0000221,9.18e-09,44;CL:0000133,9.18e-09,44;CL:0002319,1.91e-08,43;CL:0002609,5.47e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.14e-28!73;UBERON:0005743!4.14e-28!73;UBERON:0002346!6.51e-28!71;UBERON:0003075!6.51e-28!71;UBERON:0007284!6.51e-28!71;UBERON:0000073!7.20e-28!75;UBERON:0001016!7.20e-28!75;UBERON:0000033!2.22e-25!63;UBERON:0001049!2.38e-25!52;UBERON:0005068!2.38e-25!52;UBERON:0006241!2.38e-25!52;UBERON:0007135!2.38e-25!52;UBERON:0004121!2.59e-25!102;UBERON:0000924!2.59e-25!102;UBERON:0006601!2.59e-25!102;UBERON:0000955!1.71e-24!50;UBERON:0006238!1.71e-24!50;UBERON:0003056!5.33e-24!49;UBERON:0002616!9.40e-24!49;UBERON:0003080!4.53e-22!40;UBERON:0002780!2.60e-21!39;UBERON:0001890!2.60e-21!39;UBERON:0006240!2.60e-21!39;UBERON:0002020!1.52e-20!34;UBERON:0002791!1.11e-17!29;UBERON:0003528!1.11e-17!29;UBERON:0001893!1.11e-17!29;UBERON:0007811!5.22e-13!86;UBERON:0000956!9.73e-13!21;UBERON:0001869!9.73e-13!21;UBERON:0000203!9.73e-13!21;UBERON:0000153!3.67e-12!94;UBERON:0002619!6.92e-10!17;UBERON:0002021!2.25e-09!10;UBERON:0000411!2.25e-09!10;UBERON:0001950!2.25e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.06e-35,54;UBERON:0002346,3.02e-34,64;UBERON:0003075,3.02e-34,64;UBERON:0007284,3.02e-34,64;UBERON:0001049,4.61e-33,52;UBERON:0005068,4.61e-33,52;UBERON:0006241,4.61e-33,52;UBERON:0007135,4.61e-33,52;UBERON:0003056,6.07e-31,49;UBERON:0001017,1.77e-30,73;UBERON:0001016,3.81e-29,75;UBERON:0000955,5.65e-29,47;UBERON:0006238,5.65e-29,47;UBERON:0003080,8.15e-29,40;UBERON:0010371,9.31e-29,73;UBERON:0002020,1.11e-28,34;UBERON:0002616,5.58e-28,46;UBERON:0002780,9.08e-28,39;UBERON:0001890,9.08e-28,39;UBERON:0006240,9.08e-28,39;UBERON:0004121,3.93e-27,95;UBERON:0000924,3.93e-27,95;UBERON:0006601,3.93e-27,95;UBERON:0003528,1.07e-24,29;UBERON:0002791,1.07e-24,29;UBERON:0001893,1.07e-24,29;UBERON:0010314,1.36e-20,92;UBERON:0000956,8.42e-18,21;UBERON:0001869,8.42e-18,21;UBERON:0000203,8.42e-18,21;UBERON:0002619,8.19e-14,17;UBERON:0002021,2.10e-12,10;UBERON:0000411,2.10e-12,10;UBERON:0001950,2.10e-12,10;UBERON:0002420,5.64e-08,8;UBERON:0007245,5.64e-08,8;UBERON:0010009,5.64e-08,8;UBERON:0010011,5.64e-08,8;UBERON:0000454,5.64e-08,8;UBERON:0000025,7.47e-07,114|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50432901510698,0,0,0,0,0,0,0,0,0,0,0,0,15.8481681015439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1158230429799,8.46385566835253,10.775133859605,0.338844532069132,0,0,0,0,0,0,34.3212616741061,22.8160035780557,32.3900440481128,7.42692559449889,6.84692476950002,18.2511290830282,14.185129710699,20.2228133054205,12.1127469099328,26.558966321719,19.6616362567992,11.6059933202571,13.174220678747,9.37644067002168,13.1216009530649,21.3849791812038,19.2525792198781,10.3120004915784,12.2439645487229,14.1663578827228,0.075726193333184,0.226714680320357,0.289864488701678,0,0,0.539703191637817,0,0,0.702222100658759,0,0,0,1.69012103732017,0,0,0,0,0,0,0.45673551887624,0,2.07818994690755,0.346970653532272,0,0.461230994512117,0.301445281105245,0.470354828542819,1.25666591329675,0,0,0,0.161766849947409,0,0,0,1.17112318804619,0.41889341362691,0,0,0,0,31.1564529962031,26.0775343606617,11.6858547464964,71.4417955990256,71.3446125951622,15.7918913865266,32.6104938766193,0,0,0,1.26265113531884,0.130120442962704,1.60931473103431,1.62055916824814,3.61691562805716,2.51735046859913,2.17793324484245,2.52994656311268,3.62184719034622,0,0.189106080167819,0.175951124163949,0.657587197282725,0,0.348252166522167,0.205782136407943,0,0,0,0,0.414251545071004,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,20.1878350621562,6.5858951922742,0,0.264450566663544,0.213288250535234,0.928946687441754,0.128867461322093,0,0.444756087689741,0,0,0,0.251335208800269,0,0,0,0,0,0.189667900953082,0.342745537829186,0,0.407302655690628,0.193952487167626,0.140271639780637,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9816660786327,17.1129062424617,0,0,0.315508219416257,0.390438744296638,1.07711698866399,0.955875191810208,0.445597348164788,0.849229592366497,0.809621403349789,1.16902343164525,0.395287777946524,20.5645642509957,0,0,0.162886959353576,0.164970122972535,0,0,0.604647113929502,0.188605079755898,0.295301892880773,0,0.258428293168221,0.727067458955011,0,0,0,0,48.3424240170379,1.26042765821917,0.388076051348264,1.71469628025274,5.49754724291048,6.0645397984704,5.10101963866575,0.304464949114599,0,0,0,0,0,0,0,0.164140899745061,0,13.1651964427462,0,0.619160603889667,0,0,0,0,0,0,0,0,0.790839983952838,0.406638934253697,0.432021363287205,0.418176592028937,0.655087691238533,0.539457385539283,0.41326727862668,0.26175594198403,0,0,0,0.299033092087958,0.496375471371293,0.388902376688095,0.258319646955462,0.168956125490778,0.234714477291508,0.39061315453185,0.209718688851422,0,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0.147689527174577,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,100.525827985838,84.6998435173205,79.6324763680761,82.48952752497,106.18779056445,120.107629684962,89.7779925308302,97.7197010996558,109.660462974178,133.58216043197,0,2.39414924040619,3.41467211508268,2.43106717068294,0.838452650511929,1.47074806760011,6.66740183404846,5.76898160268904,6.09746498224449,4.80124702351215,5.57654459758527,5.84741658296836,4.96299989590377,6.85069130732101,5.22662767496081,5.71552429539688,6.14186927507734,5.40145817298374,3.70877310722976,5.15196220470391,3.08582327146874,3.72699192934609,5.48403236878838,4.21504608233753,4.51725025993587,4.39995961036718,4.57319932181931,2.63069711437843,5.97538100921792,6.73370725989286,6.8808310512021,6.79680928391388,5.72923460437565,5.26785260032284,3.47231899766054,6.74488560432454,4.67863216890817,2.57845264857958,0.191288332068843,0.441182838239031,0.463735671240843|short_description=p2@Ptprd}} | ||
|EntrezGene=19266 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000129550,ENSMUST00000134604,ENSMUST00000156656_5end | |||
|description=CAGE_peak_2_at_Ptprd_5end | |||
|id=chr4:77857731..77857793,- | |||
|ontology_enrichment_celltype=CL:0000540!1.42e-15!33;CL:0000047!1.42e-15!33;CL:0000031!1.42e-15!33;CL:0000404!1.42e-15!33;CL:0000117!4.55e-15!23;CL:0000337!4.55e-15!23;CL:0000393!5.94e-11!39;CL:0000211!5.94e-11!39;CL:0000221!6.82e-10!44;CL:0000133!6.82e-10!44;CL:0002319!1.23e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.62e-20,23;CL:0000337,2.62e-20,23;CL:0000540,1.81e-13,33;CL:0000047,1.81e-13,33;CL:0000031,1.81e-13,33;CL:0000404,1.81e-13,33;CL:0000393,4.08e-10,39;CL:0000211,4.08e-10,39;CL:0000221,9.18e-09,44;CL:0000133,9.18e-09,44;CL:0002319,1.91e-08,43;CL:0002609,5.47e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.14e-28!73;UBERON:0005743!4.14e-28!73;UBERON:0002346!6.51e-28!71;UBERON:0003075!6.51e-28!71;UBERON:0007284!6.51e-28!71;UBERON:0000073!7.20e-28!75;UBERON:0001016!7.20e-28!75;UBERON:0000033!2.22e-25!63;UBERON:0001049!2.38e-25!52;UBERON:0005068!2.38e-25!52;UBERON:0006241!2.38e-25!52;UBERON:0007135!2.38e-25!52;UBERON:0004121!2.59e-25!102;UBERON:0000924!2.59e-25!102;UBERON:0006601!2.59e-25!102;UBERON:0000955!1.71e-24!50;UBERON:0006238!1.71e-24!50;UBERON:0003056!5.33e-24!49;UBERON:0002616!9.40e-24!49;UBERON:0003080!4.53e-22!40;UBERON:0002780!2.60e-21!39;UBERON:0001890!2.60e-21!39;UBERON:0006240!2.60e-21!39;UBERON:0002020!1.52e-20!34;UBERON:0002791!1.11e-17!29;UBERON:0003528!1.11e-17!29;UBERON:0001893!1.11e-17!29;UBERON:0007811!5.22e-13!86;UBERON:0000956!9.73e-13!21;UBERON:0001869!9.73e-13!21;UBERON:0000203!9.73e-13!21;UBERON:0000153!3.67e-12!94;UBERON:0002619!6.92e-10!17;UBERON:0002021!2.25e-09!10;UBERON:0000411!2.25e-09!10;UBERON:0001950!2.25e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.06e-35,54;UBERON:0002346,3.02e-34,64;UBERON:0003075,3.02e-34,64;UBERON:0007284,3.02e-34,64;UBERON:0001049,4.61e-33,52;UBERON:0005068,4.61e-33,52;UBERON:0006241,4.61e-33,52;UBERON:0007135,4.61e-33,52;UBERON:0003056,6.07e-31,49;UBERON:0001017,1.77e-30,73;UBERON:0001016,3.81e-29,75;UBERON:0000955,5.65e-29,47;UBERON:0006238,5.65e-29,47;UBERON:0003080,8.15e-29,40;UBERON:0010371,9.31e-29,73;UBERON:0002020,1.11e-28,34;UBERON:0002616,5.58e-28,46;UBERON:0002780,9.08e-28,39;UBERON:0001890,9.08e-28,39;UBERON:0006240,9.08e-28,39;UBERON:0004121,3.93e-27,95;UBERON:0000924,3.93e-27,95;UBERON:0006601,3.93e-27,95;UBERON:0003528,1.07e-24,29;UBERON:0002791,1.07e-24,29;UBERON:0001893,1.07e-24,29;UBERON:0010314,1.36e-20,92;UBERON:0000956,8.42e-18,21;UBERON:0001869,8.42e-18,21;UBERON:0000203,8.42e-18,21;UBERON:0002619,8.19e-14,17;UBERON:0002021,2.10e-12,10;UBERON:0000411,2.10e-12,10;UBERON:0001950,2.10e-12,10;UBERON:0002420,5.64e-08,8;UBERON:0007245,5.64e-08,8;UBERON:0010009,5.64e-08,8;UBERON:0010011,5.64e-08,8;UBERON:0000454,5.64e-08,8;UBERON:0000025,7.47e-07,114 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50432901510698,0,0,0,0,0,0,0,0,0,0,0,0,15.8481681015439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1158230429799,8.46385566835253,10.775133859605,0.338844532069132,0,0,0,0,0,0,34.3212616741061,22.8160035780557,32.3900440481128,7.42692559449889,6.84692476950002,18.2511290830282,14.185129710699,20.2228133054205,12.1127469099328,26.558966321719,19.6616362567992,11.6059933202571,13.174220678747,9.37644067002168,13.1216009530649,21.3849791812038,19.2525792198781,10.3120004915784,12.2439645487229,14.1663578827228,0.075726193333184,0.226714680320357,0.289864488701678,0,0,0.539703191637817,0,0,0.702222100658759,0,0,0,1.69012103732017,0,0,0,0,0,0,0.45673551887624,0,2.07818994690755,0.346970653532272,0,0.461230994512117,0.301445281105245,0.470354828542819,1.25666591329675,0,0,0,0.161766849947409,0,0,0,1.17112318804619,0.41889341362691,0,0,0,0,31.1564529962031,26.0775343606617,11.6858547464964,71.4417955990256,71.3446125951622,15.7918913865266,32.6104938766193,0,0,0,1.26265113531884,0.130120442962704,1.60931473103431,1.62055916824814,3.61691562805716,2.51735046859913,2.17793324484245,2.52994656311268,3.62184719034622,0,0.189106080167819,0.175951124163949,0.657587197282725,0,0.348252166522167,0.205782136407943,0,0,0,0,0.414251545071004,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,20.1878350621562,6.5858951922742,0,0.264450566663544,0.213288250535234,0.928946687441754,0.128867461322093,0,0.444756087689741,0,0,0,0.251335208800269,0,0,0,0,0,0.189667900953082,0.342745537829186,0,0.407302655690628,0.193952487167626,0.140271639780637,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9816660786327,17.1129062424617,0,0,0.315508219416257,0.390438744296638,1.07711698866399,0.955875191810208,0.445597348164788,0.849229592366497,0.809621403349789,1.16902343164525,0.395287777946524,20.5645642509957,0,0,0.162886959353576,0.164970122972535,0,0,0.604647113929502,0.188605079755898,0.295301892880773,0,0.258428293168221,0.727067458955011,0,0,0,0,48.3424240170379,1.26042765821917,0.388076051348264,1.71469628025274,5.49754724291048,6.0645397984704,5.10101963866575,0.304464949114599,0,0,0,0,0,0,0,0.164140899745061,0,13.1651964427462,0,0.619160603889667,0,0,0,0,0,0,0,0,0.790839983952838,0.406638934253697,0.432021363287205,0.418176592028937,0.655087691238533,0.539457385539283,0.41326727862668,0.26175594198403,0,0,0,0.299033092087958,0.496375471371293,0.388902376688095,0.258319646955462,0.168956125490778,0.234714477291508,0.39061315453185,0.209718688851422,0,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0.147689527174577,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,100.525827985838,84.6998435173205,79.6324763680761,82.48952752497,106.18779056445,120.107629684962,89.7779925308302,97.7197010996558,109.660462974178,133.58216043197,0,2.39414924040619,3.41467211508268,2.43106717068294,0.838452650511929,1.47074806760011,6.66740183404846,5.76898160268904,6.09746498224449,4.80124702351215,5.57654459758527,5.84741658296836,4.96299989590377,6.85069130732101,5.22662767496081,5.71552429539688,6.14186927507734,5.40145817298374,3.70877310722976,5.15196220470391,3.08582327146874,3.72699192934609,5.48403236878838,4.21504608233753,4.51725025993587,4.39995961036718,4.57319932181931,2.63069711437843,5.97538100921792,6.73370725989286,6.8808310512021,6.79680928391388,5.72923460437565,5.26785260032284,3.47231899766054,6.74488560432454,4.67863216890817,2.57845264857958,0.191288332068843,0.441182838239031,0.463735671240843 | |||
|short_description=p2@Ptprd | |||
}} |
Revision as of 05:28, 14 September 2013
Short description: | p2@Ptprd |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ptprd_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000129550, ENSMUST00000134604, ENSMUST00000156656_5end |
EntrezGene: | Ptprd |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.62e-20 | 23 |
neuroblast (sensu Vertebrata) | 2.62e-20 | 23 |
neuron | 1.81e-13 | 33 |
neuronal stem cell | 1.81e-13 | 33 |
neuroblast | 1.81e-13 | 33 |
electrically signaling cell | 1.81e-13 | 33 |
electrically responsive cell | 4.08e-10 | 39 |
electrically active cell | 4.08e-10 | 39 |
ectodermal cell | 9.18e-09 | 44 |
neurectodermal cell | 9.18e-09 | 44 |
neural cell | 1.91e-08 | 43 |
neuron of cerebral cortex | 5.47e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.