FFCP PHASE1:Mm9::chr5:104475937..104475994,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74167|HGNC=|MCL_coexpression_id=347|UniProt=|association_with_transcript=0bp_to_ENSMUST00000142018_5end|description=CAGE_peak_1_at_Nudt9_5end|id=chr5:104475937..104475994,+|ontology_enrichment_celltype=CL:0000221!1.39e-16!44;CL:0000133!1.39e-16!44;CL:0002319!3.48e-16!43;CL:0000055!1.97e-15!50;CL:0000117!4.60e-12!23;CL:0000337!4.60e-12!23;CL:0000393!8.26e-11!39;CL:0000211!8.26e-11!39;CL:0000540!8.74e-11!33;CL:0000047!8.74e-11!33;CL:0000031!8.74e-11!33;CL:0000404!8.74e-11!33;CL:0002321!1.60e-09!70;CL:0000220!1.60e-09!70;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,1.39e-16,44;CL:0000133,1.39e-16,44;CL:0002319,3.48e-16,43;CL:0000117,4.60e-12,23;CL:0000337,4.60e-12,23;CL:0000393,8.26e-11,39;CL:0000211,8.26e-11,39;CL:0000540,8.74e-11,33;CL:0000047,8.74e-11,33;CL:0000031,8.74e-11,33;CL:0000404,8.74e-11,33;CL:0002321,1.60e-09,70;CL:0000333,9.97e-07,10;CL:0000095,9.97e-07,10;CL:0000243,9.97e-07,10;CL:0000123,9.97e-07,10;CL:0000125,9.97e-07,10;CL:0000030,9.97e-07,10;CL:0000339,9.97e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.02e-28!75;UBERON:0001016!1.02e-28!75;UBERON:0001017!1.85e-27!73;UBERON:0005743!1.85e-27!73;UBERON:0004121!3.63e-22!102;UBERON:0000924!3.63e-22!102;UBERON:0006601!3.63e-22!102;UBERON:0001049!1.22e-21!52;UBERON:0005068!1.22e-21!52;UBERON:0006241!1.22e-21!52;UBERON:0007135!1.22e-21!52;UBERON:0000955!1.14e-20!50;UBERON:0006238!1.14e-20!50;UBERON:0002616!2.93e-20!49;UBERON:0000033!9.81e-20!63;UBERON:0002346!7.81e-18!71;UBERON:0003075!7.81e-18!71;UBERON:0007284!7.81e-18!71;UBERON:0002020!1.32e-17!34;UBERON:0003080!1.34e-15!40;UBERON:0002780!3.77e-15!39;UBERON:0001890!3.77e-15!39;UBERON:0006240!3.77e-15!39;UBERON:0002791!9.22e-15!29;UBERON:0003528!9.22e-15!29;UBERON:0001893!9.22e-15!29;UBERON:0003056!1.33e-14!49;UBERON:0007811!2.43e-12!86;UBERON:0000153!1.35e-11!94;UBERON:0000956!5.66e-11!21;UBERON:0001869!5.66e-11!21;UBERON:0000203!5.66e-11!21;UBERON:0002619!1.53e-09!17;UBERON:0004111!4.61e-09!122;UBERON:0000025!1.93e-08!114;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10;UBERON:0003076!8.81e-07!12;UBERON:0003057!8.81e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.02e-28,75;UBERON:0001017,1.85e-27,73;UBERON:0004121,3.02e-24,95;UBERON:0000924,3.02e-24,95;UBERON:0006601,3.02e-24,95;UBERON:0000073,2.82e-23,54;UBERON:0001049,1.22e-21,52;UBERON:0005068,1.22e-21,52;UBERON:0006241,1.22e-21,52;UBERON:0007135,1.22e-21,52;UBERON:0002346,2.31e-20,64;UBERON:0003075,2.31e-20,64;UBERON:0007284,2.31e-20,64;UBERON:0010314,3.63e-19,92;UBERON:0000955,1.00e-18,47;UBERON:0006238,1.00e-18,47;UBERON:0002616,2.53e-18,46;UBERON:0010371,2.85e-18,73;UBERON:0002020,1.32e-17,34;UBERON:0003080,1.34e-15,40;UBERON:0002780,3.77e-15,39;UBERON:0001890,3.77e-15,39;UBERON:0006240,3.77e-15,39;UBERON:0003528,9.22e-15,29;UBERON:0002791,9.22e-15,29;UBERON:0001893,9.22e-15,29;UBERON:0003056,1.33e-14,49;UBERON:0000956,5.66e-11,21;UBERON:0001869,5.66e-11,21;UBERON:0000203,5.66e-11,21;UBERON:0002619,1.53e-09,17;UBERON:0004111,4.61e-09,122;UBERON:0000025,1.93e-08,114;UBERON:0002021,2.41e-07,10;UBERON:0000411,2.41e-07,10;UBERON:0001950,2.41e-07,10;UBERON:0003076,8.81e-07,12;UBERON:0003057,8.81e-07,12|phase1_expression=27.0651551607102,4.88565570695105,5.91499011206397,4.53696316960245,6.51164448930251,3.69334398206158,6.54115393667472,13.2997023144824,4.92760527530834,3.97909694747389,11.1291679346578,8.37607669451032,15.2368649638773,11.7143339241457,28.9805492779627,17.0079224607454,31.4802845157666,11.5143690355757,9.32378148519024,9.76096199135469,13.6919697143222,7.94327609607082,8.097193463307,5.11975752938901,6.8822784320151,5.16808767703518,3.87685796543167,4.30942465371778,5.70070258369122,6.04872311423834,4.21287970245079,10.1604907753541,6.76571266343027,31.6963362030877,8.37669697278696,13.4650062740379,11.4334839506927,4.18531630736908,8.5946887897618,8.37637990358077,3.52938892818609,2.73218193983378,5.34061388334269,12.211991343631,12.2666086775613,15.7850206859046,35.9900018400098,40.3346539303826,32.0741826792329,23.1371579898397,33.7367276117124,30.188038516644,7.55021727259814,10.8804321301702,12.0993767691287,14.663787854049,18.6246735960192,15.9858348606007,30.9544185115185,25.9205579843296,29.7900759647904,17.6199156675949,24.9002542911119,51.2942838850397,50.4321844909157,45.4707273565504,43.4420160251687,44.5693234173003,21.2563705232379,25.5161223446895,24.8183454394631,39.9911378165325,39.7563373712904,20.0884910712525,15.6228117759725,27.5765635983006,53.9567816897005,33.7094572544896,36.8655679814984,33.7628896589296,27.0803425063133,35.4221091978597,36.5729728691809,36.5795696520592,33.6156145108982,31.8198872311561,30.0404246486107,32.6199030194276,29.0788582399427,36.9544928922181,15.3628179011889,10.3250865237766,6.79971333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rt_description=p1@Nudt9}} | ||
|EntrezGene=74167 | |||
|HGNC= | |||
|MCL_coexpression_id=347 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000142018_5end | |||
|description=CAGE_peak_1_at_Nudt9_5end | |||
|id=chr5:104475937..104475994,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.39e-16!44;CL:0000133!1.39e-16!44;CL:0002319!3.48e-16!43;CL:0000055!1.97e-15!50;CL:0000117!4.60e-12!23;CL:0000337!4.60e-12!23;CL:0000393!8.26e-11!39;CL:0000211!8.26e-11!39;CL:0000540!8.74e-11!33;CL:0000047!8.74e-11!33;CL:0000031!8.74e-11!33;CL:0000404!8.74e-11!33;CL:0002321!1.60e-09!70;CL:0000220!1.60e-09!70;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.39e-16,44;CL:0000133,1.39e-16,44;CL:0002319,3.48e-16,43;CL:0000117,4.60e-12,23;CL:0000337,4.60e-12,23;CL:0000393,8.26e-11,39;CL:0000211,8.26e-11,39;CL:0000540,8.74e-11,33;CL:0000047,8.74e-11,33;CL:0000031,8.74e-11,33;CL:0000404,8.74e-11,33;CL:0002321,1.60e-09,70;CL:0000333,9.97e-07,10;CL:0000095,9.97e-07,10;CL:0000243,9.97e-07,10;CL:0000123,9.97e-07,10;CL:0000125,9.97e-07,10;CL:0000030,9.97e-07,10;CL:0000339,9.97e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.02e-28!75;UBERON:0001016!1.02e-28!75;UBERON:0001017!1.85e-27!73;UBERON:0005743!1.85e-27!73;UBERON:0004121!3.63e-22!102;UBERON:0000924!3.63e-22!102;UBERON:0006601!3.63e-22!102;UBERON:0001049!1.22e-21!52;UBERON:0005068!1.22e-21!52;UBERON:0006241!1.22e-21!52;UBERON:0007135!1.22e-21!52;UBERON:0000955!1.14e-20!50;UBERON:0006238!1.14e-20!50;UBERON:0002616!2.93e-20!49;UBERON:0000033!9.81e-20!63;UBERON:0002346!7.81e-18!71;UBERON:0003075!7.81e-18!71;UBERON:0007284!7.81e-18!71;UBERON:0002020!1.32e-17!34;UBERON:0003080!1.34e-15!40;UBERON:0002780!3.77e-15!39;UBERON:0001890!3.77e-15!39;UBERON:0006240!3.77e-15!39;UBERON:0002791!9.22e-15!29;UBERON:0003528!9.22e-15!29;UBERON:0001893!9.22e-15!29;UBERON:0003056!1.33e-14!49;UBERON:0007811!2.43e-12!86;UBERON:0000153!1.35e-11!94;UBERON:0000956!5.66e-11!21;UBERON:0001869!5.66e-11!21;UBERON:0000203!5.66e-11!21;UBERON:0002619!1.53e-09!17;UBERON:0004111!4.61e-09!122;UBERON:0000025!1.93e-08!114;UBERON:0002021!2.41e-07!10;UBERON:0000411!2.41e-07!10;UBERON:0001950!2.41e-07!10;UBERON:0003076!8.81e-07!12;UBERON:0003057!8.81e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.02e-28,75;UBERON:0001017,1.85e-27,73;UBERON:0004121,3.02e-24,95;UBERON:0000924,3.02e-24,95;UBERON:0006601,3.02e-24,95;UBERON:0000073,2.82e-23,54;UBERON:0001049,1.22e-21,52;UBERON:0005068,1.22e-21,52;UBERON:0006241,1.22e-21,52;UBERON:0007135,1.22e-21,52;UBERON:0002346,2.31e-20,64;UBERON:0003075,2.31e-20,64;UBERON:0007284,2.31e-20,64;UBERON:0010314,3.63e-19,92;UBERON:0000955,1.00e-18,47;UBERON:0006238,1.00e-18,47;UBERON:0002616,2.53e-18,46;UBERON:0010371,2.85e-18,73;UBERON:0002020,1.32e-17,34;UBERON:0003080,1.34e-15,40;UBERON:0002780,3.77e-15,39;UBERON:0001890,3.77e-15,39;UBERON:0006240,3.77e-15,39;UBERON:0003528,9.22e-15,29;UBERON:0002791,9.22e-15,29;UBERON:0001893,9.22e-15,29;UBERON:0003056,1.33e-14,49;UBERON:0000956,5.66e-11,21;UBERON:0001869,5.66e-11,21;UBERON:0000203,5.66e-11,21;UBERON:0002619,1.53e-09,17;UBERON:0004111,4.61e-09,122;UBERON:0000025,1.93e-08,114;UBERON:0002021,2.41e-07,10;UBERON:0000411,2.41e-07,10;UBERON:0001950,2.41e-07,10;UBERON:0003076,8.81e-07,12;UBERON:0003057,8.81e-07,12 | |||
|phase1_expression=27.0651551607102,4.88565570695105,5.91499011206397,4.53696316960245,6.51164448930251,3.69334398206158,6.54115393667472,13.2997023144824,4.92760527530834,3.97909694747389,11.1291679346578,8.37607669451032,15.2368649638773,11.7143339241457,28.9805492779627,17.0079224607454,31.4802845157666,11.5143690355757,9.32378148519024,9.76096199135469,13.6919697143222,7.94327609607082,8.097193463307,5.11975752938901,6.8822784320151,5.16808767703518,3.87685796543167,4.30942465371778,5.70070258369122,6.04872311423834,4.21287970245079,10.1604907753541,6.76571266343027,31.6963362030877,8.37669697278696,13.4650062740379,11.4334839506927,4.18531630736908,8.5946887897618,8.37637990358077,3.52938892818609,2.73218193983378,5.34061388334269,12.211991343631,12.2666086775613,15.7850206859046,35.9900018400098,40.3346539303826,32.0741826792329,23.1371579898397,33.7367276117124,30.188038516644,7.55021727259814,10.8804321301702,12.0993767691287,14.663787854049,18.6246735960192,15.9858348606007,30.9544185115185,25.9205579843296,29.7900759647904,17.6199156675949,24.9002542911119,51.2942838850397,50.4321844909157,45.4707273565504,43.4420160251687,44.5693234173003,21.2563705232379,25.5161223446895,24.8183454394631,39.9911378165325,39.7563373712904,20.0884910712525,15.6228117759725,27.5765635983006,53.9567816897005,33.7094572544896,36.8655679814984,33.7628896589296,27.0803425063133,35.4221091978597,36.5729728691809,36.5795696520592,33.6156145108982,31.8198872311561,30.0404246486107,32.6199030194276,29.0788582399427,36.9544928922181,15.3628179011889,10.3250865237766,6.79971333707751,8.09554787456726,9.74664626171504,10.7526452903361,15.5893306346245,14.827438064291,17.9252343175979,22.6137327686618,24.225068201589,17.9657068380045,33.1246811618639,42.6640021891999,12.7729714196616,15.2015919285059,14.1546844604139,10.0481814152773,12.4290184150642,13.6566767939639,10.7560902595004,11.5696881758614,10.8389283710347,11.6056433225519,10.347806227942,14.9543243682314,10.8765785803125,11.1341504828332,10.6153266233985,17.794353494215,18.1090045137523,16.0008833534623,7.45567044872489,21.3729981818429,20.7352239745321,4.08731288333746,5.99075622529601,5.39912457894067,6.22644112658017,27.2618963716777,23.33253074375,17.4659549436882,26.0736480288415,33.243009452943,24.5189892580281,26.6075671431123,18.7384429484582,14.9288364732112,18.4487613656583,12.6265113531884,12.6216829673823,17.7024620413774,13.1445354757905,14.9197769657358,12.3826428455417,12.6832583082001,16.6789069716317,13.1938719076898,10.1316956678436,12.1027891307404,13.5482365606241,15.7820927347854,11.3999372182495,12.1888258282758,14.8163138213719,14.131432944113,1.40442637462647,5.40430604940902,6.81992398549422,10.5634143993106,12.6644072389792,12.064158117888,12.0739815148457,10.4285042826124,13.7297730469767,12.7893669612724,12.6088498657821,14.1286064264275,17.9370236405694,15.7600765515931,17.429794052359,16.5205985790626,16.2467085315377,19.0573114639728,27.3376933133365,23.3593470100976,4.62586296177317,4.7601101999438,10.4511242762265,11.6118335930219,10.4382643670896,7.86565746031036,9.11749979763968,12.935342575654,4.2707615539006,11.3642278759568,10.304743560811,15.7175612912509,12.2827374885046,8.98819408654222,8.21324589523838,6.96994456390285,9.48339504765408,10.0538691096561,9.01661885384643,10.7935203758017,11.0552917685547,13.1855341393799,9.99137286563265,11.8088118383682,10.047918581848,11.9695249004147,2.96452627087149,14.181833985868,12.1866576970186,11.9176919563972,11.1573066763677,10.6117950291063,11.2035374783825,10.9324532231308,7.94462611197673,10.158772287959,5.75072826109418,8.55924179637558,6.55279113540577,4.79899868099512,5.02312757861354,5.78932225636041,12.0089573608293,13.6433816474749,11.5705133273838,11.3729207469376,8.44884893838608,12.5629693081362,12.8543566078447,12.4885534628991,8.82756806994669,12.6234873099802,11.0023790373666,11.6342953448174,11.569893785015,15.6220983268033,39.2057338242108,34.8099637643974,7.37646409528554,11.5893433447988,20.2293743384618,26.3726294832457,19.5082584998244,31.5588659005466,14.5133780931478,14.8366722832723,12.4945570685023,14.8160654730582,12.9223230967789,16.9845918473299,13.3587531552715,13.151513606009,10.6727700045561,23.7777774152137,11.639086987078,19.7652820070653,18.2433394476005,13.857490329693,6.63725691699814,15.0523994416088,9.97667737983678,8.11001842950362,9.44966057218473,11.9899707698132,8.26970538138308,11.2695456138027,9.9819265947722,8.53299246426703,8.4334886859999,5.15677716240934,13.6175842301515,13.5045820523483,17.0753462593236,16.5039516974326,14.7192393923087,14.6262430433698,12.8348236069654,14.6143175575008,7.50949465803873,12.921756322693,21.8323114074412,13.1909002353184,14.5317984026315,10.7960135621399,11.9372344003136,9.84845398470368,6.99554007911642,20.7676338251771,15.3783792718067,14.6534676253888,12.7784223885101,14.3160027323565,15.1730592770338,12.5827995263587,8.32894306969891,8.6769900440668,6.49539876880792,6.68269432610579,12.495271746454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| |||
|short_description=p1@Nudt9 | |||
}} |
Revision as of 05:46, 14 September 2013
Short description: | p1@Nudt9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nudt9_5end |
Coexpression cluster: | MCL_coexpression_mm9:347 |
Association with transcript: | 0bp_to_ENSMUST00000142018_5end |
EntrezGene: | Nudt9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.39e-16 | 44 |
neurectodermal cell | 1.39e-16 | 44 |
neural cell | 3.48e-16 | 43 |
CNS neuron (sensu Vertebrata) | 4.60e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.60e-12 | 23 |
electrically responsive cell | 8.26e-11 | 39 |
electrically active cell | 8.26e-11 | 39 |
neuron | 8.74e-11 | 33 |
neuronal stem cell | 8.74e-11 | 33 |
neuroblast | 8.74e-11 | 33 |
electrically signaling cell | 8.74e-11 | 33 |
embryonic cell | 1.60e-09 | 70 |
migratory neural crest cell | 9.97e-07 | 10 |
neuron associated cell | 9.97e-07 | 10 |
glial cell (sensu Vertebrata) | 9.97e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.97e-07 | 10 |
glial cell | 9.97e-07 | 10 |
glioblast | 9.97e-07 | 10 |
glioblast (sensu Vertebrata) | 9.97e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.