FFCP PHASE1:Mm9::chr7:31912012..31912061,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20266|HGNC=|MCL_coexpression_id=1|UniProt=P97952|association_with_transcript=-48bp_to_ENSMUST00000098548,NM_011322,uc009gie.1_5end|description=CAGE_peak_1_at_Scn1b_5end|id=chr7:31912012..31912061,-|ontology_enrichment_celltype=CL:0000055!2.90e-09!50;CL:0002319!1.67e-07!43;CL:0000221!1.84e-07!44;CL:0000133!1.84e-07!44|ontology_enrichment_celltype_v019_2=CL:0002319,1.86e-07,43;CL:0000221,2.04e-07,44;CL:0000133,2.04e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.05e-20!75;UBERON:0001016!6.05e-20!75;UBERON:0001017!9.89e-20!73;UBERON:0005743!9.89e-20!73;UBERON:0004121!1.83e-17!102;UBERON:0000924!1.83e-17!102;UBERON:0006601!1.83e-17!102;UBERON:0001049!3.61e-14!52;UBERON:0005068!3.61e-14!52;UBERON:0006241!3.61e-14!52;UBERON:0007135!3.61e-14!52;UBERON:0000955!7.89e-14!50;UBERON:0006238!7.89e-14!50;UBERON:0002616!2.42e-13!49;UBERON:0000033!2.46e-12!63;UBERON:0002346!6.25e-11!71;UBERON:0003075!6.25e-11!71;UBERON:0007284!6.25e-11!71;UBERON:0002020!1.68e-09!34;UBERON:0003080!1.11e-08!40;UBERON:0004111!1.82e-08!122;UBERON:0002780!3.40e-08!39;UBERON:0001890!3.40e-08!39;UBERON:0006240!3.40e-08!39;UBERON:0002791!1.15e-07!29;UBERON:0003528!1.15e-07!29;UBERON:0001893!1.15e-07!29;UBERON:0002021!2.16e-07!10;UBERON:0000411!2.16e-07!10;UBERON:0001950!2.16e-07!10;UBERON:0000025!3.56e-07!114;UBERON:0003076!4.79e-07!12;UBERON:0003057!4.79e-07!12;UBERON:0002619!8.21e-07!17;UBERON:0003056!9.76e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.88e-20,75;UBERON:0001017,8.05e-20,73;UBERON:0004121,2.13e-18,95;UBERON:0000924,2.13e-18,95;UBERON:0006601,2.13e-18,95;UBERON:0000073,2.16e-15,54;UBERON:0001049,3.52e-14,52;UBERON:0005068,3.52e-14,52;UBERON:0006241,3.52e-14,52;UBERON:0007135,3.52e-14,52;UBERON:0010371,1.57e-12,73;UBERON:0000955,4.37e-12,47;UBERON:0006238,4.37e-12,47;UBERON:0002346,7.73e-12,64;UBERON:0003075,7.73e-12,64;UBERON:0007284,7.73e-12,64;UBERON:0002616,1.30e-11,46;UBERON:0010314,4.83e-11,92;UBERON:0002020,1.90e-09,34;UBERON:0003080,1.23e-08,40;UBERON:0002780,3.81e-08,39;UBERON:0001890,3.81e-08,39;UBERON:0006240,3.81e-08,39;UBERON:0004111,4.72e-08,122;UBERON:0003528,1.36e-07,29;UBERON:0002791,1.36e-07,29;UBERON:0001893,1.36e-07,29;UBERON:0002021,1.75e-07,10;UBERON:0000411,1.75e-07,10;UBERON:0001950,1.75e-07,10;UBERON:0003076,3.93e-07,12;UBERON:0003057,3.93e-07,12;UBERON:0000025,8.79e-07,114;UBERON:0003056,9.39e-07,49|phase1_expression=6.56610273129655,0,0,0,0.500895729946347,0.16787927191189,0.467225281191051,1.54947988129892,3.51971805379167,11.9372908424217,1.19852577757853,4.30769658574817,0,0.0874204024189974,1.33243904726265,1.41732687172878,1.39912375625629,0.473193248037357,0.548457734422955,0,35.378008702845,0.297872853602656,0.261199789138935,0.159992422793407,0.68822784320151,0,0,0.430942465371778,0.950117097281869,0.504060259519861,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,15.485308610996,17.538209100976,9.36088436024576,61.0265248591471,5.88667922227206,32.5135550447018,14.9711022287198,16.6583841734181,10.062679505548,0.335565212115473,0,0,15.4355661621568,25.5014761545493,27.3306208907044,4.04632921719196,5.28990979272033,5.07065122804943,38.9671211879502,24.0109594950008,45.8948855813513,48.4544517657817,54.7069688508497,35.6524131516902,36.5007390055477,1.14058573539325,1.62007125998029,1.05162480675691,45.4185065202048,34.2346238475001,1.5923803897944,1.72521847832825,0.919218786610021,103.508928139425,147.606562826477,112.900801943339,2.63772575460388,3.11057988248193,2.08365348222704,168.905714395835,86.102679334847,83.5806415339151,21.2132581541041,18.3659468230843,6.71038004971082,2.80186915332781,6.8014404096107,4.63783181922684,1.72084775396277,6.79971333707751,2.15881276655127,1.29955283489534,0,54.7733238513832,8.52151612890289,10.9110121933205,15.9002808529653,2.81686839553361,3.84979432242953,2.54805239706646,0,2.16491041011214,3.54703811665138,2.52762222507392,13.1311461676919,1.55362730188303,6.82833839698194,2.25530924795977,0.913396434936424,1.38369298353635,1.95939432718409,2.3517741427141,3.64433114856059,0.494389935468748,18.2195189719089,19.4614321428972,10.1913115466868,39.5306318044104,33.9412677194656,1.86391761218122,170.983985454744,193.738203802446,2.29911349687732,1.1981512450592,0.599902730993408,0.762421362438388,94.8174747432528,82.8076091101714,9.42407640846483,148.09832080382,130.926314153129,98.2837450766719,82.7430441645564,3.25885964321012,21.7712198567663,2.0217820674694,14.5204880561667,0.260240885925407,1.14951052216736,0.180062129805349,1.65775299619287,1.49680298132921,1.66547836370305,2.34254311399322,10.0894314588216,0,1.13463648100692,1.40760899331159,2.6303487891309,1.39023624612799,2.089512999133,1.85203922767149,0.796137067273973,0.702213187313235,0,0,1.03562886267751,0.703578179943289,1.80062061461015,1.18372367792605,1.37734962223183,1.69693824176116,1.62773761325285,1.07309360559848,1.98501082024188,2.46839774870221,4.26835406605648,4.86412857275134,5.55559952216263,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| ||
|EntrezGene=20266 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P97952 | |||
|association_with_transcript=-48bp_to_ENSMUST00000098548,NM_011322,uc009gie.1_5end | |||
|description=CAGE_peak_1_at_Scn1b_5end | |||
|id=chr7:31912012..31912061,- | |||
|ontology_enrichment_celltype=CL:0000055!2.90e-09!50;CL:0002319!1.67e-07!43;CL:0000221!1.84e-07!44;CL:0000133!1.84e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.86e-07,43;CL:0000221,2.04e-07,44;CL:0000133,2.04e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.05e-20!75;UBERON:0001016!6.05e-20!75;UBERON:0001017!9.89e-20!73;UBERON:0005743!9.89e-20!73;UBERON:0004121!1.83e-17!102;UBERON:0000924!1.83e-17!102;UBERON:0006601!1.83e-17!102;UBERON:0001049!3.61e-14!52;UBERON:0005068!3.61e-14!52;UBERON:0006241!3.61e-14!52;UBERON:0007135!3.61e-14!52;UBERON:0000955!7.89e-14!50;UBERON:0006238!7.89e-14!50;UBERON:0002616!2.42e-13!49;UBERON:0000033!2.46e-12!63;UBERON:0002346!6.25e-11!71;UBERON:0003075!6.25e-11!71;UBERON:0007284!6.25e-11!71;UBERON:0002020!1.68e-09!34;UBERON:0003080!1.11e-08!40;UBERON:0004111!1.82e-08!122;UBERON:0002780!3.40e-08!39;UBERON:0001890!3.40e-08!39;UBERON:0006240!3.40e-08!39;UBERON:0002791!1.15e-07!29;UBERON:0003528!1.15e-07!29;UBERON:0001893!1.15e-07!29;UBERON:0002021!2.16e-07!10;UBERON:0000411!2.16e-07!10;UBERON:0001950!2.16e-07!10;UBERON:0000025!3.56e-07!114;UBERON:0003076!4.79e-07!12;UBERON:0003057!4.79e-07!12;UBERON:0002619!8.21e-07!17;UBERON:0003056!9.76e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.88e-20,75;UBERON:0001017,8.05e-20,73;UBERON:0004121,2.13e-18,95;UBERON:0000924,2.13e-18,95;UBERON:0006601,2.13e-18,95;UBERON:0000073,2.16e-15,54;UBERON:0001049,3.52e-14,52;UBERON:0005068,3.52e-14,52;UBERON:0006241,3.52e-14,52;UBERON:0007135,3.52e-14,52;UBERON:0010371,1.57e-12,73;UBERON:0000955,4.37e-12,47;UBERON:0006238,4.37e-12,47;UBERON:0002346,7.73e-12,64;UBERON:0003075,7.73e-12,64;UBERON:0007284,7.73e-12,64;UBERON:0002616,1.30e-11,46;UBERON:0010314,4.83e-11,92;UBERON:0002020,1.90e-09,34;UBERON:0003080,1.23e-08,40;UBERON:0002780,3.81e-08,39;UBERON:0001890,3.81e-08,39;UBERON:0006240,3.81e-08,39;UBERON:0004111,4.72e-08,122;UBERON:0003528,1.36e-07,29;UBERON:0002791,1.36e-07,29;UBERON:0001893,1.36e-07,29;UBERON:0002021,1.75e-07,10;UBERON:0000411,1.75e-07,10;UBERON:0001950,1.75e-07,10;UBERON:0003076,3.93e-07,12;UBERON:0003057,3.93e-07,12;UBERON:0000025,8.79e-07,114;UBERON:0003056,9.39e-07,49 | |||
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| |||
|short_description=p1@Scn1b | |||
}} |
Revision as of 13:19, 14 September 2013
Short description: | p1@Scn1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scn1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -48bp_to_ENSMUST00000098548, NM_011322, uc009gie.1_5end |
EntrezGene: | Scn1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.86e-07 | 43 |
ectodermal cell | 2.04e-07 | 44 |
neurectodermal cell | 2.04e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.88e-20 | 75 |
central nervous system | 8.05e-20 | 73 |
ectoderm-derived structure | 2.13e-18 | 95 |
ectoderm | 2.13e-18 | 95 |
presumptive ectoderm | 2.13e-18 | 95 |
regional part of nervous system | 2.16e-15 | 54 |
neural tube | 3.52e-14 | 52 |
neural rod | 3.52e-14 | 52 |
future spinal cord | 3.52e-14 | 52 |
neural keel | 3.52e-14 | 52 |
ecto-epithelium | 1.57e-12 | 73 |
brain | 4.37e-12 | 47 |
future brain | 4.37e-12 | 47 |
neurectoderm | 7.73e-12 | 64 |
neural plate | 7.73e-12 | 64 |
presumptive neural plate | 7.73e-12 | 64 |
regional part of brain | 1.30e-11 | 46 |
structure with developmental contribution from neural crest | 4.83e-11 | 92 |
gray matter | 1.90e-09 | 34 |
anterior neural tube | 1.23e-08 | 40 |
regional part of forebrain | 3.81e-08 | 39 |
forebrain | 3.81e-08 | 39 |
future forebrain | 3.81e-08 | 39 |
anatomical conduit | 4.72e-08 | 122 |
brain grey matter | 1.36e-07 | 29 |
regional part of telencephalon | 1.36e-07 | 29 |
telencephalon | 1.36e-07 | 29 |
occipital lobe | 1.75e-07 | 10 |
visual cortex | 1.75e-07 | 10 |
neocortex | 1.75e-07 | 10 |
posterior neural tube | 3.93e-07 | 12 |
chordal neural plate | 3.93e-07 | 12 |
tube | 8.79e-07 | 114 |
pre-chordal neural plate | 9.39e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.