FFCP PHASE1:Mm9::chr7:91032308..91032340,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=562|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:91032308..91032340,-|id=chr7:91032308..91032340,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,4.31e-07,9;CL:0002251,4.31e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!7.18e-15!59;UBERON:0000160!6.83e-12!43;UBERON:0004923!1.20e-11!24;UBERON:0000344!2.41e-09!15;UBERON:0001242!1.82e-08!13;UBERON:0000060!1.82e-08!13;UBERON:0001262!1.82e-08!13;UBERON:0004786!1.82e-08!13|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.52e-17,47;UBERON:0000160,1.29e-14,31;UBERON:0004923,2.33e-13,24;UBERON:0000344,4.82e-11,15;UBERON:0001242,5.65e-10,13;UBERON:0001262,5.65e-10,13;UBERON:0004786,5.65e-10,13;UBERON:0004119,4.99e-08,118;UBERON:0000925,4.99e-08,118;UBERON:0006595,4.99e-08,118;UBERON:0001007,1.82e-07,116;UBERON:0001555,1.82e-07,116;UBERON:0007026,1.82e-07,116;UBERON:0003350,4.31e-07,9;UBERON:0004808,4.31e-07,9;UBERON:0001277,4.31e-07,9;UBERON:0004921,8.80e-07,114|phase1_expression=0.320297694209588,15.0059425284925,7.73498706962211,7.86406949397758,11.0197060588196,3.86122325397347,5.84031601488814,0.129123323441576,0.140788722151667,0,0,0.159544317990673,0,0,5.3297561890506,6.88415909125408,10.4934281719222,0.157731082679119,0.137114433605739,0.42438965179803,0.680346321208558,0.198581902401771,0,3.51983330145495,3.21172993494038,4.01962374880514,5.1691439539089,5.60225204983311,5.89072600314759,5.29263272495855,4.6563407237614,1.27006134691926,0.61506478758457,0,2.02196133825892,2.99222361645286,2.04169356262369,0.837063261473815,0,1.0470474879476,0.588231488031014,0.683045484958446,1.45653105909346,1.6366586336825,1.62203089951223,1.46837401729345,2.34717403304412,0.65407546914134,0.878744730937887,0.58328969722285,2.09979632438044,0,0.335565212115473,0,0,1.28629718017973,1.71920063963254,1.03134418455488,0.404632921719196,0.528990979272033,0.633831403506179,1.0165335962074,3.55717918444456,2.2497492932035,1.97773272513395,4.2628806896766,2.39680088414724,0,0.207379224616955,0.135005938331691,0.210324961351382,0.571301968807607,0.441737081903227,0.122490799214954,0.191690942036473,0,2.20231761998777,1.27687338085188,0.921639199537461,0,0.365950574409639,0.52091337055676,1.3959149950069,0,0.45839474333043,0.294628585473668,0.711858403995515,0.745597783301202,1.74170244666323,1.43585964202892,0.579728977403356,0,1.3599426674155,1.07940638327563,0,0.896053774194671,1.26399978118577,0.681721290312231,1.29893002301434,2.47337702157238,0.563373679106722,1.28326477414318,2.54805239706646,0,1.08245520505607,1.01343946190039,0.505524445014783,1.1418387971906,0.517875767294343,0.593768556259299,1.38788261412909,1.82679286987285,1.38369298353635,0.904335843315735,1.29347577849275,0.879666139307728,0.741584903203122,2.31358971071859,4.42305275974937,1.61766849947409,3.97514733228708,3.39412677194655,3.72783522436244,2.04946557908083,2.51336048176146,4.08731288333746,0,1.19980546198682,0.254140454146129,0.599162557619291,0,0.125654352112864,0.347648640384553,0.255715457330331,1.24672826735736,0.324482526135515,0.81471491080253,2.48813941220186,0.252722758433675,0.841767423545896,0.260240885925407,0.229902104433473,0.540186389416048,0.30140963567143,0.544291993210623,0.2562274405697,0.374806898238915,1.55222022443409,0.646703978798527,0.378212160335639,0.351902248327898,0.219195732427575,0,0,0.205782136407943,0.398068533636986,0,0.772043721344145,0.568326998791185,0.828503090142008,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.462801338662135,0.465067889500816,0.268273401399619,0.467061369468678,0.493679549740441,0.32833492815819,0.56748166682099,0.438599962275997,0.219550115291051,0.536825675041487,0.210289948564127,0.102904612379284,11.5646574044329,6.61126416658861,0,0.232236671860439,1.15980715189884,1.81515172161008,1.11189021922435,1.71203063501303,7.59246498471219,1.81168850196412,2.5133520880027,2.38747766449381,1.16978452271472,5.39291645192533,3.6743468478698,5.17767310461355,0.758671603812327,0.114248512609729,0,0,0.193952487167626,0.911765658574141,0.569128834118316,0.590440591918409,0.784993639206874,0.616985819609003,0.889357881261447,4.50481785433454,6.09332884850929,4.72210436008193,8.92584534109413,6.99413763282009,5.60176873919124,4.60313819921297,3.72911021582581,2.19649130550465,1.43768206527355,1.11642284300551,0.624075346229121,0.505157755894224,0.179397413521912,0.482443521363367,0.184753190166605,1.51593129416388,0.162964976442026,0.169745085775188,0,0.502518772325447,0.952174563544055,2.14647012643579,1.10344600874334,1.10732344824387,1.11618338060241,0.655453258862952,0.690739927463582,0.433947175744535,1.50791283939272,1.08781136763742,1.47529281905711,1.93155722413313,0.321101179975584,0.117211686592203,0.655739781506702,0.757412781613119,0.315508219416257,1.17131623288992,0.430846795465598,1.67278158566786,0.668396022247182,0.849229592366497,0.404810701674894,1.75353514746787,1.97643888973262,0.321321316421807,1.27746076687442,0.890328018336276,1.79175655288934,1.97964147567043,6.63725691699814,0.485561272309963,1.209294227859,0.754420319023592,1.18120757152309,1.84461088766356,2.32585463851399,0,1.78248689192361,0.948110273807448,2.10837217149998,3.09406629744561,0,0.18006109403131,0.258717367565509,0.643011105094777,0.177340233642274,0.891844088010353,0.329098041204242,0,2.81606049676452,1.69465656691056,0.441056796109924,0.98931751764888,0.645857706783622,0.603129249281559,0.477489376012546,0.492422699235184,9.03590593552537,0.556275906031529,2.9048049735635,1.23832120777933,1.66675074632741,6.96963290917357,7.51818252465638,4.11800711771741,0.509935289981566,0.279902904647316,0.967399816630967,3.81868247206045,0.316335993581135,0.609958401380546,1.08005340821801,1.46361807210128,1.9652630737156,0.674321731924103,1.73572257023205,1.83229159388821,2.46268449254406,1.24267862617385,0,1.49516546043979,1.15820943319968,0.972255941720238,2.71235629303235,2.36538575687089,1.64300134104056,2.21347454234715,2.09718688851422,0.483168241652012,0.288030006257865,0,0,0.308132871494482,0,0.179026695667481,0.39736270956253,0.240390899039938,0.147689527174577,0.100966449948148,0,0.100826185136841,0.292373642219257,0,0.233753804363138,0.453460767230423,0.665957860122194,0.62799699626633,0.839423081820392,0.772758376128762,2.25218970541418,2.74727436400898,1.71494703263253,1.50471631210609,0.564751842617067,0,0.572895513439397,0,0,0,0.675022500231806,0,0,0,0.207574695168353,0.798049746802062,2.04880326904961,0.729320151204882,1.67690530102386,0.919217542250071,0.44449345560323,1.23621034343337,0.962757628775446,1.01078884705519,0.760437899670719,0.943131706930381,0.936415074698824,1.02440243847791,0.746661096422973,0,0.927074607558844,0.578727661391115,0.824171801606613,0.588795680537589,1.02860775715625,1.24233064311536,2.38436189947321,1.30811774969096,1.03520318456864,1.18460451048347,1.09756783723664,1.05227884575137,0.543216455383447,2.24456908663095,1.30498519936592,1.57607171800902,0.409231043169689,1.23949472948773,0.964533054905707,1.99848462350357,1.16965804222704,1.50409737833809,0.382576664137687,1.76473135295612,1.15933917810211|short_description=p@chr7:91032308..91032340,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=562 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:91032308..91032340,- | |||
|id=chr7:91032308..91032340,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.31e-07,9;CL:0002251,4.31e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!7.18e-15!59;UBERON:0000160!6.83e-12!43;UBERON:0004923!1.20e-11!24;UBERON:0000344!2.41e-09!15;UBERON:0001242!1.82e-08!13;UBERON:0000060!1.82e-08!13;UBERON:0001262!1.82e-08!13;UBERON:0004786!1.82e-08!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.52e-17,47;UBERON:0000160,1.29e-14,31;UBERON:0004923,2.33e-13,24;UBERON:0000344,4.82e-11,15;UBERON:0001242,5.65e-10,13;UBERON:0001262,5.65e-10,13;UBERON:0004786,5.65e-10,13;UBERON:0004119,4.99e-08,118;UBERON:0000925,4.99e-08,118;UBERON:0006595,4.99e-08,118;UBERON:0001007,1.82e-07,116;UBERON:0001555,1.82e-07,116;UBERON:0007026,1.82e-07,116;UBERON:0003350,4.31e-07,9;UBERON:0004808,4.31e-07,9;UBERON:0001277,4.31e-07,9;UBERON:0004921,8.80e-07,114 | |||
|phase1_expression=0.320297694209588,15.0059425284925,7.73498706962211,7.86406949397758,11.0197060588196,3.86122325397347,5.84031601488814,0.129123323441576,0.140788722151667,0,0,0.159544317990673,0,0,5.3297561890506,6.88415909125408,10.4934281719222,0.157731082679119,0.137114433605739,0.42438965179803,0.680346321208558,0.198581902401771,0,3.51983330145495,3.21172993494038,4.01962374880514,5.1691439539089,5.60225204983311,5.89072600314759,5.29263272495855,4.6563407237614,1.27006134691926,0.61506478758457,0,2.02196133825892,2.99222361645286,2.04169356262369,0.837063261473815,0,1.0470474879476,0.588231488031014,0.683045484958446,1.45653105909346,1.6366586336825,1.62203089951223,1.46837401729345,2.34717403304412,0.65407546914134,0.878744730937887,0.58328969722285,2.09979632438044,0,0.335565212115473,0,0,1.28629718017973,1.71920063963254,1.03134418455488,0.404632921719196,0.528990979272033,0.633831403506179,1.0165335962074,3.55717918444456,2.2497492932035,1.97773272513395,4.2628806896766,2.39680088414724,0,0.207379224616955,0.135005938331691,0.210324961351382,0.571301968807607,0.441737081903227,0.122490799214954,0.191690942036473,0,2.20231761998777,1.27687338085188,0.921639199537461,0,0.365950574409639,0.52091337055676,1.3959149950069,0,0.45839474333043,0.294628585473668,0.711858403995515,0.745597783301202,1.74170244666323,1.43585964202892,0.579728977403356,0,1.3599426674155,1.07940638327563,0,0.896053774194671,1.26399978118577,0.681721290312231,1.29893002301434,2.47337702157238,0.563373679106722,1.28326477414318,2.54805239706646,0,1.08245520505607,1.01343946190039,0.505524445014783,1.1418387971906,0.517875767294343,0.593768556259299,1.38788261412909,1.82679286987285,1.38369298353635,0.904335843315735,1.29347577849275,0.879666139307728,0.741584903203122,2.31358971071859,4.42305275974937,1.61766849947409,3.97514733228708,3.39412677194655,3.72783522436244,2.04946557908083,2.51336048176146,4.08731288333746,0,1.19980546198682,0.254140454146129,0.599162557619291,0,0.125654352112864,0.347648640384553,0.255715457330331,1.24672826735736,0.324482526135515,0.81471491080253,2.48813941220186,0.252722758433675,0.841767423545896,0.260240885925407,0.229902104433473,0.540186389416048,0.30140963567143,0.544291993210623,0.2562274405697,0.374806898238915,1.55222022443409,0.646703978798527,0.378212160335639,0.351902248327898,0.219195732427575,0,0,0.205782136407943,0.398068533636986,0,0.772043721344145,0.568326998791185,0.828503090142008,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.462801338662135,0.465067889500816,0.268273401399619,0.467061369468678,0.493679549740441,0.32833492815819,0.56748166682099,0.438599962275997,0.219550115291051,0.536825675041487,0.210289948564127,0.102904612379284,11.5646574044329,6.61126416658861,0,0.232236671860439,1.15980715189884,1.81515172161008,1.11189021922435,1.71203063501303,7.59246498471219,1.81168850196412,2.5133520880027,2.38747766449381,1.16978452271472,5.39291645192533,3.6743468478698,5.17767310461355,0.758671603812327,0.114248512609729,0,0,0.193952487167626,0.911765658574141,0.569128834118316,0.590440591918409,0.784993639206874,0.616985819609003,0.889357881261447,4.50481785433454,6.09332884850929,4.72210436008193,8.92584534109413,6.99413763282009,5.60176873919124,4.60313819921297,3.72911021582581,2.19649130550465,1.43768206527355,1.11642284300551,0.624075346229121,0.505157755894224,0.179397413521912,0.482443521363367,0.184753190166605,1.51593129416388,0.162964976442026,0.169745085775188,0,0.502518772325447,0.952174563544055,2.14647012643579,1.10344600874334,1.10732344824387,1.11618338060241,0.655453258862952,0.690739927463582,0.433947175744535,1.50791283939272,1.08781136763742,1.47529281905711,1.93155722413313,0.321101179975584,0.117211686592203,0.655739781506702,0.757412781613119,0.315508219416257,1.17131623288992,0.430846795465598,1.67278158566786,0.668396022247182,0.849229592366497,0.404810701674894,1.75353514746787,1.97643888973262,0.321321316421807,1.27746076687442,0.890328018336276,1.79175655288934,1.97964147567043,6.63725691699814,0.485561272309963,1.209294227859,0.754420319023592,1.18120757152309,1.84461088766356,2.32585463851399,0,1.78248689192361,0.948110273807448,2.10837217149998,3.09406629744561,0,0.18006109403131,0.258717367565509,0.643011105094777,0.177340233642274,0.891844088010353,0.329098041204242,0,2.81606049676452,1.69465656691056,0.441056796109924,0.98931751764888,0.645857706783622,0.603129249281559,0.477489376012546,0.492422699235184,9.03590593552537,0.556275906031529,2.9048049735635,1.23832120777933,1.66675074632741,6.96963290917357,7.51818252465638,4.11800711771741,0.509935289981566,0.279902904647316,0.967399816630967,3.81868247206045,0.316335993581135,0.609958401380546,1.08005340821801,1.46361807210128,1.9652630737156,0.674321731924103,1.73572257023205,1.83229159388821,2.46268449254406,1.24267862617385,0,1.49516546043979,1.15820943319968,0.972255941720238,2.71235629303235,2.36538575687089,1.64300134104056,2.21347454234715,2.09718688851422,0.483168241652012,0.288030006257865,0,0,0.308132871494482,0,0.179026695667481,0.39736270956253,0.240390899039938,0.147689527174577,0.100966449948148,0,0.100826185136841,0.292373642219257,0,0.233753804363138,0.453460767230423,0.665957860122194,0.62799699626633,0.839423081820392,0.772758376128762,2.25218970541418,2.74727436400898,1.71494703263253,1.50471631210609,0.564751842617067,0,0.572895513439397,0,0,0,0.675022500231806,0,0,0,0.207574695168353,0.798049746802062,2.04880326904961,0.729320151204882,1.67690530102386,0.919217542250071,0.44449345560323,1.23621034343337,0.962757628775446,1.01078884705519,0.760437899670719,0.943131706930381,0.936415074698824,1.02440243847791,0.746661096422973,0,0.927074607558844,0.578727661391115,0.824171801606613,0.588795680537589,1.02860775715625,1.24233064311536,2.38436189947321,1.30811774969096,1.03520318456864,1.18460451048347,1.09756783723664,1.05227884575137,0.543216455383447,2.24456908663095,1.30498519936592,1.57607171800902,0.409231043169689,1.23949472948773,0.964533054905707,1.99848462350357,1.16965804222704,1.50409737833809,0.382576664137687,1.76473135295612,1.15933917810211 | |||
|short_description=p@chr7:91032308..91032340,- | |||
}} | |||
Revision as of 14:23, 14 September 2013
| Short description: | p@chr7:91032308..91032340, - |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr7:91032308..91032340, - |
| Coexpression cluster: | MCL_coexpression_mm9:562 |
| Association with transcript: | NA |
| EntrezGene: | NA |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 4.31e-07 | 9 |
| epithelial cell of alimentary canal | 4.31e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| gastrointestinal system | 3.52e-17 | 47 |
| intestine | 1.29e-14 | 31 |
| organ component layer | 2.33e-13 | 24 |
| mucosa | 4.82e-11 | 15 |
| intestinal mucosa | 5.65e-10 | 13 |
| wall of intestine | 5.65e-10 | 13 |
| gastrointestinal system mucosa | 5.65e-10 | 13 |
| endoderm-derived structure | 4.99e-08 | 118 |
| endoderm | 4.99e-08 | 118 |
| presumptive endoderm | 4.99e-08 | 118 |
| digestive system | 1.82e-07 | 116 |
| digestive tract | 1.82e-07 | 116 |
| primitive gut | 1.82e-07 | 116 |
| epithelium of mucosa | 4.31e-07 | 9 |
| gastrointestinal system epithelium | 4.31e-07 | 9 |
| intestinal epithelium | 4.31e-07 | 9 |
| subdivision of digestive tract | 8.80e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
