FFCP PHASE1:Mm9::chr8:48374767..48374815,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=71069|HGNC=|MCL_coexpression_id=1|UniProt=Q499E5|association_with_transcript=-11bp_to_ENSMUST00000079195,NM_001114311,uc009lqw.2,uc009lqx.2_5end|description=CAGE_peak_3_at_Stox2_5end|id=chr8:48374767..48374815,-|ontology_enrichment_celltype=CL:0000540!6.62e-14!33;CL:0000047!6.62e-14!33;CL:0000031!6.62e-14!33;CL:0000404!6.62e-14!33;CL:0000117!8.22e-13!23;CL:0000337!8.22e-13!23;CL:0000221!2.02e-12!44;CL:0000133!2.02e-12!44;CL:0002319!2.66e-12!43;CL:0000393!1.99e-11!39;CL:0000211!1.99e-11!39;CL:0000055!8.47e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,7.65e-15,33;CL:0000047,7.65e-15,33;CL:0000031,7.65e-15,33;CL:0000404,7.65e-15,33;CL:0000117,1.15e-13,23;CL:0000337,1.15e-13,23;CL:0000221,6.87e-13,44;CL:0000133,6.87e-13,44;CL:0002319,9.24e-13,43;CL:0000393,3.20e-12,39;CL:0000211,3.20e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.49e-29!73;UBERON:0005743!1.49e-29!73;UBERON:0004121!3.94e-28!102;UBERON:0000924!3.94e-28!102;UBERON:0006601!3.94e-28!102;UBERON:0000073!4.39e-28!75;UBERON:0001016!4.39e-28!75;UBERON:0002346!9.53e-26!71;UBERON:0003075!9.53e-26!71;UBERON:0007284!9.53e-26!71;UBERON:0000033!3.52e-24!63;UBERON:0001049!4.12e-23!52;UBERON:0005068!4.12e-23!52;UBERON:0006241!4.12e-23!52;UBERON:0007135!4.12e-23!52;UBERON:0000955!9.22e-22!50;UBERON:0006238!9.22e-22!50;UBERON:0002616!3.40e-21!49;UBERON:0003056!3.30e-20!49;UBERON:0002020!3.81e-18!34;UBERON:0003080!1.90e-17!40;UBERON:0002780!9.40e-17!39;UBERON:0001890!9.40e-17!39;UBERON:0006240!9.40e-17!39;UBERON:0002791!4.71e-15!29;UBERON:0003528!4.71e-15!29;UBERON:0001893!4.71e-15!29;UBERON:0000153!1.38e-11!94;UBERON:0007811!1.20e-10!86;UBERON:0000956!1.35e-10!21;UBERON:0001869!1.35e-10!21;UBERON:0000203!1.35e-10!21;UBERON:0000468!2.16e-10!333;UBERON:0004111!1.81e-09!122;UBERON:0002619!7.60e-09!17;UBERON:0000025!7.94e-09!114;UBERON:0000922!1.16e-07!328;UBERON:0002021!2.25e-07!10;UBERON:0000411!2.25e-07!10;UBERON:0001950!2.25e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.46e-31,73;UBERON:0001016,1.16e-29,75;UBERON:0002346,6.24e-29,64;UBERON:0003075,6.24e-29,64;UBERON:0007284,6.24e-29,64;UBERON:0004121,9.85e-29,95;UBERON:0000924,9.85e-29,95;UBERON:0006601,9.85e-29,95;UBERON:0010314,3.95e-27,92;UBERON:0000073,1.84e-26,54;UBERON:0010371,4.68e-26,73;UBERON:0001049,5.43e-25,52;UBERON:0005068,5.43e-25,52;UBERON:0006241,5.43e-25,52;UBERON:0007135,5.43e-25,52;UBERON:0003056,1.26e-21,49;UBERON:0000955,2.03e-21,47;UBERON:0006238,2.03e-21,47;UBERON:0002616,8.06e-21,46;UBERON:0002020,2.09e-19,34;UBERON:0003080,1.18e-18,40;UBERON:0002780,6.59e-18,39;UBERON:0001890,6.59e-18,39;UBERON:0006240,6.59e-18,39;UBERON:0003528,4.46e-16,29;UBERON:0002791,4.46e-16,29;UBERON:0001893,4.46e-16,29;UBERON:0000956,2.78e-11,21;UBERON:0001869,2.78e-11,21;UBERON:0000203,2.78e-11,21;UBERON:0004111,2.45e-10,122;UBERON:0000025,8.30e-10,114;UBERON:0002619,2.12e-09,17;UBERON:0002021,8.12e-08,10;UBERON:0000411,8.12e-08,10;UBERON:0001950,8.12e-08,10;UBERON:0003076,6.56e-07,12;UBERON:0003057,6.56e-07,12|phase1_expression=2.88267924788629,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63634199468316,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.51076181570693,1.52065396829272,1.65192076945513,0,5.23260375313072,2.19686182734472,4.47188767870852,2.93971485413261,1.43752564364972,0,0,0,0.257259436035947,1.14613375975503,0,9.91350658212029,14.8117474196169,13.9442908771359,0.338844532069132,0,0,0,0,0.599200221036809,2.68952813725088,4.66603255388149,4.72520784160917,3.57552434297349,8.56952953211411,7.28866185140325,3.79721477566358,2.68367318851062,1.83843757322004,22.0231761998777,7.02280359468532,10.5988507946808,10.2871304429551,10.2466160834699,7.29278718779464,8.65467296904281,10.1297269805702,8.70950012327818,15.3206864446307,12.6710795911202,9.69277118291563,0.151452386666368,0.377857800533928,0.289864488701678,0,0,0.539703191637817,0,0,0.842666520790511,0,0,0,2.39433813620357,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0,1.33597925158342,1.21439728736295,2.43572382649713,1.38369298353635,1.95939432718409,1.99900802130698,1.13099932196708,0.247194967734374,1.59059292611903,1.76922110389975,1.7794353494215,0.441683036920787,1.45462575940567,0,7.61230072230023,9.84399522023239,0,0,0,0,13.3313669070292,8.23501085073528,6.40837195775608,9.21268897019065,11.5071955798649,10.389402227978,11.1946471516753,1.73126918545538,1.24406970610093,1.51633655060205,2.73574412652416,1.95180664444056,3.44853156650209,3.96136685571768,2.41127708537144,4.01415344992834,5.89323113310309,4.40398105430725,3.10444044886819,2.15567992932842,4.16033376369202,3.69497360744293,2.19195732427575,2.50242524303038,2.78601733217733,2.05782136407943,2.58744546864041,0,0,0,2.89976081549703,1.87620847984877,1.44049649168812,3.07768156260773,1.57411385397923,2.31400669331067,1.39520366850245,1.60964040839772,1.86824547787471,1.81015834904829,1.31333971263276,2.26992666728396,2.48539978623065,2.85415149878366,2.28150911892632,4.83666881697493,7.40913209130848,0,0.264450566663544,1.49301775374664,0.696710015581316,0.902072229254653,0.80673409849337,1.11189021922435,0.380451252225118,0.474529061544512,0.988193728344065,0.754005626400808,0.198956472041151,1.16978452271472,2.69645822596266,0,0.995706366271836,0.569003702859245,1.02823661348756,1.1270773567308,0.814605311381257,1.16371492300575,1.96380295692892,0.758838445491087,0.442830443938806,0.31399745568275,0.246794327843601,0,0.500535317148282,0,0,0,0.241177159752417,0,0,0,0,0,0.372140947668503,0.312037673114561,0,0,0,0.923765950833023,2.08440552947533,0.977789858652155,0.509235257325564,1.87752198630802,1.00503754465089,0.714130922658041,1.95133647857799,2.99506773801763,3.32197034473162,2.07291199254733,1.3109065177259,1.55416483679306,1.59113964439663,0,0,0.983528546038072,0.551873492609465,12.2018448390722,9.84578167374507,0,1.26235463602186,2.83957397474631,3.90438744296638,1.93881057959519,2.62865677747807,1.55959071857676,2.54768877709949,2.83367491172426,4.09158201075837,1.97643888973262,7.39039027770156,1.13552068166615,1.24645922567079,2.60619134965722,1.97964147567043,1.32745138339963,0.728341908464944,0.302323556964751,0.943025398779491,0,0.922305443831782,0.775284879504663,1.81766864738753,1.06949213515416,2.21225730555071,3.16255825724996,1.03135543248187,2.38307724027652,2.16073312837572,3.10460841078611,1.71469628025274,2.6601035046341,2.67553226403106,1.97458824722545,2.43571959291679,0.704015124191131,1.27099242518292,3.96951116498931,0.32977250588296,2.09903754704677,1.80938774784468,1.19372344003136,1.47726809770555,0.582961673259701,10.0129663085675,0,0.412773735926445,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0.138199973804424,0.954670618015114,3.00519193902079,1.01659733563424,0.86404272657441,0.418176592028937,1.09181281873089,1.21377911746339,1.1571483801547,0.785267825952089,0.90730481304255,0.621339313086926,0,4.48549638131936,3.30916980914195,5.25018208528929,4.1331143512874,2.02747350588934,3.52071715937262,1.5624526181274,0.943734099831398,0,0.288030006257865,0,1.62180172232131,1.23253148597793,0.389762468933385,0.716106782669926,0.39736270956253,0.480781798079875,0.147689527174577,0.100966449948148,0.457240839929999,0.100826185136841,0.0974578807397524,0.0962118416403295,0,1.13365191807606,0.443971906748129,0,0,1.35232715822533,0.187682475451182,0.915758121336325,1.07184189539533,3.00943262421218,11.2950368523413,6.44455331110048,8.02053718815155,7.21783365843488,10.9613203163303,15.8632718451837,10.8003600037089,13.9599572999508,9.9691329976525,11.39072685854,2.90604573235695,4.38927360741134,3.07320490357441,2.18796045361465,2.09613162627982,2.75765262675021,1.77797382241292,3.5025959730612,1.28367683836726,2.27427490587418,2.28131369901216,1.69763707247469,1.96647165686753,2.4969809437899,2.5845961030026,2.85776214769844,3.01299247456624,3.08654752741928,2.88460130562315,3.38557516309114,3.08582327146874,2.8396128985494,2.86123427936785,2.90692833264657,3.76437521661322,2.36920902096694,3.10977553883713,1.31534855718921,2.03706170768793,2.24456908663095,1.66089025373844,2.56111654176465,1.22769312950907,2.78886314134739,2.89359916471712,5.49583271463481,2.57324769289949,2.57845264857958,2.48674831689496,1.76473135295612,1.39120701372253|short_description=p3@Stox2}} | ||
|EntrezGene=71069 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q499E5 | |||
|association_with_transcript=-11bp_to_ENSMUST00000079195,NM_001114311,uc009lqw.2,uc009lqx.2_5end | |||
|description=CAGE_peak_3_at_Stox2_5end | |||
|id=chr8:48374767..48374815,- | |||
|ontology_enrichment_celltype=CL:0000540!6.62e-14!33;CL:0000047!6.62e-14!33;CL:0000031!6.62e-14!33;CL:0000404!6.62e-14!33;CL:0000117!8.22e-13!23;CL:0000337!8.22e-13!23;CL:0000221!2.02e-12!44;CL:0000133!2.02e-12!44;CL:0002319!2.66e-12!43;CL:0000393!1.99e-11!39;CL:0000211!1.99e-11!39;CL:0000055!8.47e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.65e-15,33;CL:0000047,7.65e-15,33;CL:0000031,7.65e-15,33;CL:0000404,7.65e-15,33;CL:0000117,1.15e-13,23;CL:0000337,1.15e-13,23;CL:0000221,6.87e-13,44;CL:0000133,6.87e-13,44;CL:0002319,9.24e-13,43;CL:0000393,3.20e-12,39;CL:0000211,3.20e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.49e-29!73;UBERON:0005743!1.49e-29!73;UBERON:0004121!3.94e-28!102;UBERON:0000924!3.94e-28!102;UBERON:0006601!3.94e-28!102;UBERON:0000073!4.39e-28!75;UBERON:0001016!4.39e-28!75;UBERON:0002346!9.53e-26!71;UBERON:0003075!9.53e-26!71;UBERON:0007284!9.53e-26!71;UBERON:0000033!3.52e-24!63;UBERON:0001049!4.12e-23!52;UBERON:0005068!4.12e-23!52;UBERON:0006241!4.12e-23!52;UBERON:0007135!4.12e-23!52;UBERON:0000955!9.22e-22!50;UBERON:0006238!9.22e-22!50;UBERON:0002616!3.40e-21!49;UBERON:0003056!3.30e-20!49;UBERON:0002020!3.81e-18!34;UBERON:0003080!1.90e-17!40;UBERON:0002780!9.40e-17!39;UBERON:0001890!9.40e-17!39;UBERON:0006240!9.40e-17!39;UBERON:0002791!4.71e-15!29;UBERON:0003528!4.71e-15!29;UBERON:0001893!4.71e-15!29;UBERON:0000153!1.38e-11!94;UBERON:0007811!1.20e-10!86;UBERON:0000956!1.35e-10!21;UBERON:0001869!1.35e-10!21;UBERON:0000203!1.35e-10!21;UBERON:0000468!2.16e-10!333;UBERON:0004111!1.81e-09!122;UBERON:0002619!7.60e-09!17;UBERON:0000025!7.94e-09!114;UBERON:0000922!1.16e-07!328;UBERON:0002021!2.25e-07!10;UBERON:0000411!2.25e-07!10;UBERON:0001950!2.25e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.46e-31,73;UBERON:0001016,1.16e-29,75;UBERON:0002346,6.24e-29,64;UBERON:0003075,6.24e-29,64;UBERON:0007284,6.24e-29,64;UBERON:0004121,9.85e-29,95;UBERON:0000924,9.85e-29,95;UBERON:0006601,9.85e-29,95;UBERON:0010314,3.95e-27,92;UBERON:0000073,1.84e-26,54;UBERON:0010371,4.68e-26,73;UBERON:0001049,5.43e-25,52;UBERON:0005068,5.43e-25,52;UBERON:0006241,5.43e-25,52;UBERON:0007135,5.43e-25,52;UBERON:0003056,1.26e-21,49;UBERON:0000955,2.03e-21,47;UBERON:0006238,2.03e-21,47;UBERON:0002616,8.06e-21,46;UBERON:0002020,2.09e-19,34;UBERON:0003080,1.18e-18,40;UBERON:0002780,6.59e-18,39;UBERON:0001890,6.59e-18,39;UBERON:0006240,6.59e-18,39;UBERON:0003528,4.46e-16,29;UBERON:0002791,4.46e-16,29;UBERON:0001893,4.46e-16,29;UBERON:0000956,2.78e-11,21;UBERON:0001869,2.78e-11,21;UBERON:0000203,2.78e-11,21;UBERON:0004111,2.45e-10,122;UBERON:0000025,8.30e-10,114;UBERON:0002619,2.12e-09,17;UBERON:0002021,8.12e-08,10;UBERON:0000411,8.12e-08,10;UBERON:0001950,8.12e-08,10;UBERON:0003076,6.56e-07,12;UBERON:0003057,6.56e-07,12 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63634199468316,0,0,0,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.51076181570693,1.52065396829272,1.65192076945513,0,5.23260375313072,2.19686182734472,4.47188767870852,2.93971485413261,1.43752564364972,0,0,0,0.257259436035947,1.14613375975503,0,9.91350658212029,14.8117474196169,13.9442908771359,0.338844532069132,0,0,0,0,0.599200221036809,2.68952813725088,4.66603255388149,4.72520784160917,3.57552434297349,8.56952953211411,7.28866185140325,3.79721477566358,2.68367318851062,1.83843757322004,22.0231761998777,7.02280359468532,10.5988507946808,10.2871304429551,10.2466160834699,7.29278718779464,8.65467296904281,10.1297269805702,8.70950012327818,15.3206864446307,12.6710795911202,9.69277118291563,0.151452386666368,0.377857800533928,0.289864488701678,0,0,0.539703191637817,0,0,0.842666520790511,0,0,0,2.39433813620357,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0,1.33597925158342,1.21439728736295,2.43572382649713,1.38369298353635,1.95939432718409,1.99900802130698,1.13099932196708,0.247194967734374,1.59059292611903,1.76922110389975,1.7794353494215,0.441683036920787,1.45462575940567,0,7.61230072230023,9.84399522023239,0,0,0,0,13.3313669070292,8.23501085073528,6.40837195775608,9.21268897019065,11.5071955798649,10.389402227978,11.1946471516753,1.73126918545538,1.24406970610093,1.51633655060205,2.73574412652416,1.95180664444056,3.44853156650209,3.96136685571768,2.41127708537144,4.01415344992834,5.89323113310309,4.40398105430725,3.10444044886819,2.15567992932842,4.16033376369202,3.69497360744293,2.19195732427575,2.50242524303038,2.78601733217733,2.05782136407943,2.58744546864041,0,0,0,2.89976081549703,1.87620847984877,1.44049649168812,3.07768156260773,1.57411385397923,2.31400669331067,1.39520366850245,1.60964040839772,1.86824547787471,1.81015834904829,1.31333971263276,2.26992666728396,2.48539978623065,2.85415149878366,2.28150911892632,4.83666881697493,7.40913209130848,0,0.264450566663544,1.49301775374664,0.696710015581316,0.902072229254653,0.80673409849337,1.11189021922435,0.380451252225118,0.474529061544512,0.988193728344065,0.754005626400808,0.198956472041151,1.16978452271472,2.69645822596266,0,0.995706366271836,0.569003702859245,1.02823661348756,1.1270773567308,0.814605311381257,1.16371492300575,1.96380295692892,0.758838445491087,0.442830443938806,0.31399745568275,0.246794327843601,0,0.500535317148282,0,0,0,0.241177159752417,0,0,0,0,0,0.372140947668503,0.312037673114561,0,0,0,0.923765950833023,2.08440552947533,0.977789858652155,0.509235257325564,1.87752198630802,1.00503754465089,0.714130922658041,1.95133647857799,2.99506773801763,3.32197034473162,2.07291199254733,1.3109065177259,1.55416483679306,1.59113964439663,0,0,0.983528546038072,0.551873492609465,12.2018448390722,9.84578167374507,0,1.26235463602186,2.83957397474631,3.90438744296638,1.93881057959519,2.62865677747807,1.55959071857676,2.54768877709949,2.83367491172426,4.09158201075837,1.97643888973262,7.39039027770156,1.13552068166615,1.24645922567079,2.60619134965722,1.97964147567043,1.32745138339963,0.728341908464944,0.302323556964751,0.943025398779491,0,0.922305443831782,0.775284879504663,1.81766864738753,1.06949213515416,2.21225730555071,3.16255825724996,1.03135543248187,2.38307724027652,2.16073312837572,3.10460841078611,1.71469628025274,2.6601035046341,2.67553226403106,1.97458824722545,2.43571959291679,0.704015124191131,1.27099242518292,3.96951116498931,0.32977250588296,2.09903754704677,1.80938774784468,1.19372344003136,1.47726809770555,0.582961673259701,10.0129663085675,0,0.412773735926445,0.185194527369712,0.188368457004691,0.136694227721025,0,0,0,0.138199973804424,0.954670618015114,3.00519193902079,1.01659733563424,0.86404272657441,0.418176592028937,1.09181281873089,1.21377911746339,1.1571483801547,0.785267825952089,0.90730481304255,0.621339313086926,0,4.48549638131936,3.30916980914195,5.25018208528929,4.1331143512874,2.02747350588934,3.52071715937262,1.5624526181274,0.943734099831398,0,0.288030006257865,0,1.62180172232131,1.23253148597793,0.389762468933385,0.716106782669926,0.39736270956253,0.480781798079875,0.147689527174577,0.100966449948148,0.457240839929999,0.100826185136841,0.0974578807397524,0.0962118416403295,0,1.13365191807606,0.443971906748129,0,0,1.35232715822533,0.187682475451182,0.915758121336325,1.07184189539533,3.00943262421218,11.2950368523413,6.44455331110048,8.02053718815155,7.21783365843488,10.9613203163303,15.8632718451837,10.8003600037089,13.9599572999508,9.9691329976525,11.39072685854,2.90604573235695,4.38927360741134,3.07320490357441,2.18796045361465,2.09613162627982,2.75765262675021,1.77797382241292,3.5025959730612,1.28367683836726,2.27427490587418,2.28131369901216,1.69763707247469,1.96647165686753,2.4969809437899,2.5845961030026,2.85776214769844,3.01299247456624,3.08654752741928,2.88460130562315,3.38557516309114,3.08582327146874,2.8396128985494,2.86123427936785,2.90692833264657,3.76437521661322,2.36920902096694,3.10977553883713,1.31534855718921,2.03706170768793,2.24456908663095,1.66089025373844,2.56111654176465,1.22769312950907,2.78886314134739,2.89359916471712,5.49583271463481,2.57324769289949,2.57845264857958,2.48674831689496,1.76473135295612,1.39120701372253 | |||
|short_description=p3@Stox2 | |||
}} |
Revision as of 15:45, 14 September 2013
Short description: | p3@Stox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Stox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -11bp_to_ENSMUST00000079195, NM_001114311, uc009lqw.2, uc009lqx.2_5end |
EntrezGene: | Stox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.65e-15 | 33 |
neuronal stem cell | 7.65e-15 | 33 |
neuroblast | 7.65e-15 | 33 |
electrically signaling cell | 7.65e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.15e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.15e-13 | 23 |
ectodermal cell | 6.87e-13 | 44 |
neurectodermal cell | 6.87e-13 | 44 |
neural cell | 9.24e-13 | 43 |
electrically responsive cell | 3.20e-12 | 39 |
electrically active cell | 3.20e-12 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.