FFCP PHASE1:Mm9::chr9:123169874..123169891,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72309|HGNC=|UniProt=B2RTM1|association_with_transcript=15bp_to_ENSMUST00000068140,NM_001002267,uc009sgb.1_5end|description=CAGE_peak_1_at_Tmem158_5end|id=chr9:123169874..123169891,-|ontology_enrichment_celltype=CL:0002319!2.72e-11!43;CL:0000221!4.80e-11!44;CL:0000133!4.80e-11!44;CL:0000055!8.61e-10!50;CL:0000540!1.59e-08!33;CL:0000047!1.59e-08!33;CL:0000031!1.59e-08!33;CL:0000404!1.59e-08!33;CL:0000393!1.05e-07!39;CL:0000211!1.05e-07!39|ontology_enrichment_celltype_v019_2=CL:0002319,2.69e-11,43;CL:0000221,4.76e-11,44;CL:0000133,4.76e-11,44;CL:0000540,1.58e-08,33;CL:0000047,1.58e-08,33;CL:0000031,1.58e-08,33;CL:0000404,1.58e-08,33;CL:0000393,1.05e-07,39;CL:0000211,1.05e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.69e-19!75;UBERON:0001016!1.69e-19!75;UBERON:0001017!2.68e-18!73;UBERON:0005743!2.68e-18!73;UBERON:0004121!7.28e-18!102;UBERON:0000924!7.28e-18!102;UBERON:0006601!7.28e-18!102;UBERON:0002346!1.52e-13!71;UBERON:0003075!1.52e-13!71;UBERON:0007284!1.52e-13!71;UBERON:0001049!1.92e-12!52;UBERON:0005068!1.92e-12!52;UBERON:0006241!1.92e-12!52;UBERON:0007135!1.92e-12!52;UBERON:0003080!2.25e-12!40;UBERON:0002780!3.08e-12!39;UBERON:0001890!3.08e-12!39;UBERON:0006240!3.08e-12!39;UBERON:0003056!3.45e-12!49;UBERON:0002020!1.54e-11!34;UBERON:0000955!4.46e-11!50;UBERON:0006238!4.46e-11!50;UBERON:0002616!1.35e-10!49;UBERON:0000033!2.18e-10!63;UBERON:0002791!5.06e-10!29;UBERON:0003528!5.06e-10!29;UBERON:0001893!5.06e-10!29;UBERON:0002619!1.79e-07!17;UBERON:0000956!1.97e-07!21;UBERON:0001869!1.97e-07!21;UBERON:0000203!1.97e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.66e-19,75;UBERON:0001017,2.64e-18,73;UBERON:0004121,4.19e-17,95;UBERON:0000924,4.19e-17,95;UBERON:0006601,4.19e-17,95;UBERON:0002346,5.22e-13,64;UBERON:0003075,5.22e-13,64;UBERON:0007284,5.22e-13,64;UBERON:0001049,1.90e-12,52;UBERON:0005068,1.90e-12,52;UBERON:0006241,1.90e-12,52;UBERON:0007135,1.90e-12,52;UBERON:0003080,2.22e-12,40;UBERON:0002780,3.05e-12,39;UBERON:0001890,3.05e-12,39;UBERON:0006240,3.05e-12,39;UBERON:0003056,3.42e-12,49;UBERON:0000073,3.75e-12,54;UBERON:0010371,8.18e-12,73;UBERON:0000955,1.02e-11,47;UBERON:0006238,1.02e-11,47;UBERON:0002020,1.52e-11,34;UBERON:0002616,3.21e-11,46;UBERON:0003528,5.02e-10,29;UBERON:0002791,5.02e-10,29;UBERON:0001893,5.02e-10,29;UBERON:0010314,2.52e-09,92;UBERON:0002619,1.78e-07,17;UBERON:0000956,1.96e-07,21;UBERON:0001869,1.96e-07,21;UBERON:0000203,1.96e-07,21|phase1_expression=13.2923543096979,6.2815573375085,14.1049764210756,2.11724947914781,4.00716583957078,14.7733759282463,9.81173090501208,10.4589891987677,13.3749286044083,19.8954847373694,0.856089841127525,1.11681022593471,0.513602189793617,0.437102012094987,0.666219523631325,1.61980213911861,0,0.473193248037357,1.09691546884591,0.42438965179803,11.9911039113008,0.496454756004426,0.522399578277871,2.3998863419011,2.75291137280604,13.7815671387605,9.47676391549965,11.8509177977239,1.52018735565099,1.00812051903972,4.8780712344167,14.6057054895715,6.1506478758457,31.6963362030877,1.44425809875637,1.49611180822643,2.85837098767317,0,0,0,0,0,0,16.7442767907518,15.6120474078052,16.702754446713,215.940011040059,13.5175596955877,17.5748946187577,11.665793944457,15.3985063787899,8.62515386189829,0,2.17608642603403,1.00828139742739,4.3734104126111,5.73066879877513,6.18806510732931,21.4455448511174,26.4495489636016,30.4239073682966,37.6117430596737,20.4537803105562,1.3498495759221,1.97773272513395,4.2628806896766,79.3940292873773,51.4852529130883,9.22837549545451,12.9605700798423,11.567872874326,19.1386159550548,17.8903518170807,29.1528102131591,19.6483215587385,38.6071890376209,8.8092704799511,10.4703617229854,7.98753972932466,20.7061471736404,16.742238779241,20.3156214517136,12.2840519560608,20.8222165711722,18.3357897332172,21.5078867395777,17.0846016958924,22.3679334990361,26.6556200532808,214.472087583057,10.1452571045587,2.58127163094416,9.51959867190851,0.539703191637817,1.29955283489534,0,5.05599912474307,0.170430322578058,0.519572009205738,0,8.87313544593087,2.56652954828636,0,0,4.5463118612355,4.56047757855178,7.58286667522175,4.22480354960522,3.6251303710604,8.75808620482466,10.0621489524359,16.7456013071678,15.912469310668,20.0461111934988,19.2845479702556,8.04266184509923,4.94389935468748,17.6411215442292,7.96149496754887,13.426648545635,4.63767188766826,5.81850303762267,24.2309289583559,5.5628351432194,6.91174132484402,9.70736809792647,2.27648736561249,2.99951365496704,1.65191295194984,16.027598416316,186.66024595,85.6962681409735,40.848715245185,34.5215867395946,42.8043371792694,73.9820159588975,19.2476397677098,6.59356944233493,10.108910337347,2.94618598241064,4.81445638962004,17.7024620413774,15.48534316326,16.8789395976001,16.0566137997134,19.2170580427275,33.8263225660621,6.20888089773638,6.68260778091811,9.07709184805532,19.1786725338704,28.2762494831572,17.7950239504383,21.9398864908965,32.925141825271,4.77682240364384,0,1.02939162845886,0.2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| ||
|EntrezGene=72309 | |||
|HGNC= | |||
|UniProt=B2RTM1 | |||
|association_with_transcript=15bp_to_ENSMUST00000068140,NM_001002267,uc009sgb.1_5end | |||
|description=CAGE_peak_1_at_Tmem158_5end | |||
|id=chr9:123169874..123169891,- | |||
|ontology_enrichment_celltype=CL:0002319!2.72e-11!43;CL:0000221!4.80e-11!44;CL:0000133!4.80e-11!44;CL:0000055!8.61e-10!50;CL:0000540!1.59e-08!33;CL:0000047!1.59e-08!33;CL:0000031!1.59e-08!33;CL:0000404!1.59e-08!33;CL:0000393!1.05e-07!39;CL:0000211!1.05e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.69e-11,43;CL:0000221,4.76e-11,44;CL:0000133,4.76e-11,44;CL:0000540,1.58e-08,33;CL:0000047,1.58e-08,33;CL:0000031,1.58e-08,33;CL:0000404,1.58e-08,33;CL:0000393,1.05e-07,39;CL:0000211,1.05e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.69e-19!75;UBERON:0001016!1.69e-19!75;UBERON:0001017!2.68e-18!73;UBERON:0005743!2.68e-18!73;UBERON:0004121!7.28e-18!102;UBERON:0000924!7.28e-18!102;UBERON:0006601!7.28e-18!102;UBERON:0002346!1.52e-13!71;UBERON:0003075!1.52e-13!71;UBERON:0007284!1.52e-13!71;UBERON:0001049!1.92e-12!52;UBERON:0005068!1.92e-12!52;UBERON:0006241!1.92e-12!52;UBERON:0007135!1.92e-12!52;UBERON:0003080!2.25e-12!40;UBERON:0002780!3.08e-12!39;UBERON:0001890!3.08e-12!39;UBERON:0006240!3.08e-12!39;UBERON:0003056!3.45e-12!49;UBERON:0002020!1.54e-11!34;UBERON:0000955!4.46e-11!50;UBERON:0006238!4.46e-11!50;UBERON:0002616!1.35e-10!49;UBERON:0000033!2.18e-10!63;UBERON:0002791!5.06e-10!29;UBERON:0003528!5.06e-10!29;UBERON:0001893!5.06e-10!29;UBERON:0002619!1.79e-07!17;UBERON:0000956!1.97e-07!21;UBERON:0001869!1.97e-07!21;UBERON:0000203!1.97e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.66e-19,75;UBERON:0001017,2.64e-18,73;UBERON:0004121,4.19e-17,95;UBERON:0000924,4.19e-17,95;UBERON:0006601,4.19e-17,95;UBERON:0002346,5.22e-13,64;UBERON:0003075,5.22e-13,64;UBERON:0007284,5.22e-13,64;UBERON:0001049,1.90e-12,52;UBERON:0005068,1.90e-12,52;UBERON:0006241,1.90e-12,52;UBERON:0007135,1.90e-12,52;UBERON:0003080,2.22e-12,40;UBERON:0002780,3.05e-12,39;UBERON:0001890,3.05e-12,39;UBERON:0006240,3.05e-12,39;UBERON:0003056,3.42e-12,49;UBERON:0000073,3.75e-12,54;UBERON:0010371,8.18e-12,73;UBERON:0000955,1.02e-11,47;UBERON:0006238,1.02e-11,47;UBERON:0002020,1.52e-11,34;UBERON:0002616,3.21e-11,46;UBERON:0003528,5.02e-10,29;UBERON:0002791,5.02e-10,29;UBERON:0001893,5.02e-10,29;UBERON:0010314,2.52e-09,92;UBERON:0002619,1.78e-07,17;UBERON:0000956,1.96e-07,21;UBERON:0001869,1.96e-07,21;UBERON:0000203,1.96e-07,21 | |||
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| |||
|short_description=p1@Tmem158 | |||
}} |
Revision as of 17:16, 14 September 2013
Short description: | p1@Tmem158 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tmem158_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENSMUST00000068140, NM_001002267, uc009sgb.1_5end |
EntrezGene: | Tmem158 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.69e-11 | 43 |
ectodermal cell | 4.76e-11 | 44 |
neurectodermal cell | 4.76e-11 | 44 |
neuron | 1.58e-08 | 33 |
neuronal stem cell | 1.58e-08 | 33 |
neuroblast | 1.58e-08 | 33 |
electrically signaling cell | 1.58e-08 | 33 |
electrically responsive cell | 1.05e-07 | 39 |
electrically active cell | 1.05e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.66e-19 | 75 |
central nervous system | 2.64e-18 | 73 |
ectoderm-derived structure | 4.19e-17 | 95 |
ectoderm | 4.19e-17 | 95 |
presumptive ectoderm | 4.19e-17 | 95 |
neurectoderm | 5.22e-13 | 64 |
neural plate | 5.22e-13 | 64 |
presumptive neural plate | 5.22e-13 | 64 |
neural tube | 1.90e-12 | 52 |
neural rod | 1.90e-12 | 52 |
future spinal cord | 1.90e-12 | 52 |
neural keel | 1.90e-12 | 52 |
anterior neural tube | 2.22e-12 | 40 |
regional part of forebrain | 3.05e-12 | 39 |
forebrain | 3.05e-12 | 39 |
future forebrain | 3.05e-12 | 39 |
pre-chordal neural plate | 3.42e-12 | 49 |
regional part of nervous system | 3.75e-12 | 54 |
ecto-epithelium | 8.18e-12 | 73 |
brain | 1.02e-11 | 47 |
future brain | 1.02e-11 | 47 |
gray matter | 1.52e-11 | 34 |
regional part of brain | 3.21e-11 | 46 |
brain grey matter | 5.02e-10 | 29 |
regional part of telencephalon | 5.02e-10 | 29 |
telencephalon | 5.02e-10 | 29 |
structure with developmental contribution from neural crest | 2.52e-09 | 92 |
regional part of cerebral cortex | 1.78e-07 | 17 |
cerebral cortex | 1.96e-07 | 21 |
cerebral hemisphere | 1.96e-07 | 21 |
pallium | 1.96e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.