FFCP PHASE1:Mm9::chr9:44925896..44925959,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=72821|HGNC=|MCL_coexpression_id=1|UniProt=Q56A07,Q1MXF8|association_with_transcript=0bp_to_ENSMUST00000170998,NM_001014761,uc009pfg.1_5end|description=CAGE_peak_1_at_Scn2b_5end|id=chr9:44925896..44925959,+|ontology_enrichment_celltype=CL:0000117!1.19e-11!23;CL:0000337!1.19e-11!23;CL:0000540!1.07e-08!33;CL:0000047!1.07e-08!33;CL:0000031!1.07e-08!33;CL:0000404!1.07e-08!33;CL:0000221!3.34e-07!44;CL:0000133!3.34e-07!44;CL:0002319!3.62e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,3.71e-12,23;CL:0000337,3.71e-12,23;CL:0000540,2.71e-08,33;CL:0000047,2.71e-08,33;CL:0000031,2.71e-08,33;CL:0000404,2.71e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.48e-25!52;UBERON:0005068!1.48e-25!52;UBERON:0006241!1.48e-25!52;UBERON:0007135!1.48e-25!52;UBERON:0002346!1.90e-25!71;UBERON:0003075!1.90e-25!71;UBERON:0007284!1.90e-25!71;UBERON:0001017!2.48e-25!73;UBERON:0005743!2.48e-25!73;UBERON:0000033!3.29e-25!63;UBERON:0000955!6.73e-25!50;UBERON:0006238!6.73e-25!50;UBERON:0000073!1.25e-24!75;UBERON:0001016!1.25e-24!75;UBERON:0002616!2.80e-24!49;UBERON:0004121!2.35e-21!102;UBERON:0000924!2.35e-21!102;UBERON:0006601!2.35e-21!102;UBERON:0003056!4.35e-21!49;UBERON:0003080!4.11e-20!40;UBERON:0002780!1.81e-19!39;UBERON:0001890!1.81e-19!39;UBERON:0006240!1.81e-19!39;UBERON:0002020!5.35e-17!34;UBERON:0000153!1.45e-14!94;UBERON:0002791!2.63e-14!29;UBERON:0003528!2.63e-14!29;UBERON:0001893!2.63e-14!29;UBERON:0007811!1.63e-12!86;UBERON:0000956!5.19e-10!21;UBERON:0001869!5.19e-10!21;UBERON:0000203!5.19e-10!21;UBERON:0002619!4.48e-09!17;UBERON:0002021!6.44e-08!10;UBERON:0000411!6.44e-08!10;UBERON:0001950!6.44e-08!10;UBERON:0000468!7.14e-08!333;UBERON:0000025!3.16e-07!114;UBERON:0004111!5.81e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.53e-28,54;UBERON:0002346,1.95e-26,64;UBERON:0003075,1.95e-26,64;UBERON:0007284,1.95e-26,64;UBERON:0001049,2.75e-26,52;UBERON:0005068,2.75e-26,52;UBERON:0006241,2.75e-26,52;UBERON:0007135,2.75e-26,52;UBERON:0001017,4.03e-25,73;UBERON:0001016,2.03e-24,75;UBERON:0000955,3.32e-23,47;UBERON:0006238,3.32e-23,47;UBERON:0002616,1.43e-22,46;UBERON:0003056,4.50e-22,49;UBERON:0003080,4.76e-21,40;UBERON:0010371,5.18e-21,73;UBERON:0002780,2.27e-20,39;UBERON:0001890,2.27e-20,39;UBERON:0006240,2.27e-20,39;UBERON:0004121,4.21e-20,95;UBERON:0000924,4.21e-20,95;UBERON:0006601,4.21e-20,95;UBERON:0010314,1.03e-18,92;UBERON:0002020,8.92e-18,34;UBERON:0003528,5.99e-15,29;UBERON:0002791,5.99e-15,29;UBERON:0001893,5.99e-15,29;UBERON:0000956,1.95e-10,21;UBERON:0001869,1.95e-10,21;UBERON:0000203,1.95e-10,21;UBERON:0002619,1.87e-09,17;UBERON:0002021,3.07e-08,10;UBERON:0000411,3.07e-08,10;UBERON:0001950,3.07e-08,10|phase1_expression=5.2849119544582,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,55.1930953080443,0,0,0,0,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.92445281484804,3.29529274101708,2.52758868796568,1.39986421625363,1.43752564364972,0,0,0,0,2.57880095944881,0,11.3297218081375,25.3915670050576,10.1413024560989,0.677689064138264,1.77858959222228,0,0,0,1.19840044207362,2.30530983192933,4.76972216618997,7.69533848490637,4.6271491497304,56.8445458963569,62.5057970893066,7.96190194897201,6.42164655822184,9.19218786610021,350.168501578056,360.078293400229,377.257645677334,15.2988093767025,16.1933129176265,10.4182674111352,290.629501960438,232.983720553115,227.822187435224,31.8198872311561,40.148813985347,13.6071595452469,1.36307147999731,1.36028808192214,0.289864488701678,0,0,0,0,0,11.3759980306719,0,0,0,3.38024207464033,0,0,0,0,0,0,7.4219521817389,0,4.89859058913922,4.8575891494518,3.04465478312141,4.38169444786511,3.76806601381556,2.11659672844269,2.26199864393416,0,1.59059292611903,0,2.58826959915855,0.441683036920787,1.45462575940567,0,337.283478157302,222.851296049516,1.27728527604296,0,0,0,221.240774400923,206.332771871201,10.8062742817063,263.691493731683,186.672283851141,277.189251442453,226.651044505657,3.1570202793598,2.98576729464223,8.59257378674494,7.57590681191306,5.98554037628437,3.44853156650209,5.58192602396583,5.27466862425003,2.65342346690179,4.22775276940004,3.27956035959051,25.8703370739016,10.5628316537093,9.64441008855878,12.4925298156404,10.302199424096,9.73165372289593,9.05455632957633,5.96768195583036,6.17006227137329,0,0,0,3.10688658803253,3.28336483973535,2.52086886045421,4.7348947117042,2.55793501271625,1.85120535464854,1.16266972375204,2.14618721119695,0.116765342367169,0.987359099480883,0.492502392237286,0.243206428637567,0.438599962275997,1.09775057645525,0.268412837520744,231.529233369104,7.51203670368776,0,1.58670339998127,8.95810652247983,6.96710015581316,5.41243337552792,3.02525286935014,2.89091456998331,2.47293313946327,1.89811624617805,1.31759163779209,3.01602250560323,1.59165177632921,1.55971269695296,0,0.648414149624083,0.796565093017469,7.96605184002943,4.56994050438915,6.76246414038483,4.48032921259691,5.04276466635827,1.1221731182451,2.40298841072178,0.442830443938806,0.156998727841375,0.493588655687202,0.296452627087149,2.50267658574141,1.37591296579242,0.674586337154561,1.01430060694251,0.482354319504834,0.25462585178142,0.575392274901621,0,0,1.43768206527355,0.372140947668503,0,0,0,0,0.554259570499814,6.44270800019648,6.51859905768104,7.63852885988347,4.92849521405854,2.68010011906905,1.42826184531608,0.390267295715598,0.157635144106191,0,0.159454768657487,0.327726629431476,0.518054945597687,0.144649058581512,0,0,0,0.275936746304732,161.995545297682,156.94644834696,0,0,1.89304931649754,1.95219372148319,1.29254038639679,0.238968797952552,0.445597348164788,0.849229592366497,2.02405350837447,3.50707029493574,2.37172666767914,90.6126112309496,1.98716119291576,9.97167380536629,1.79175655288934,8.74341651754438,0,6.31229654002952,5.74414758233027,2.64047111658257,2.06711325016541,2.15204603560749,0.775284879504663,1.09060118843252,2.13898427030833,1.58018378967908,0,0,24.5116516142727,11.3438489239725,13.4533031134065,11.1455258216428,15.7832807941623,13.5560301377574,15.7967059778036,9.74287837166718,0.23467170806371,0,2.20528398054962,0.16488625294148,0,1.08563264870681,0.238744688006273,0.164140899745061,1.7488850197791,107.732100468106,0.170870880797853,5.15967169908056,1.11116716421827,0.188368457004691,0.27338845544205,0.228778173206523,0,0,0,0,6.32671987162271,5.08298667817122,4.53622431451565,3.76358932826044,3.27543845619266,2.56242258131159,1.65306911450672,1.04702376793612,1.03691978633434,1.86401793926078,0,5.23307911153926,3.97100377097034,4.86127970860119,4.77891346867605,5.57555214119568,1.87771581833206,2.47388331203505,0.734015410979976,0.241584120826006,0,0,4.25722952109345,4.62199307241723,1.94881234466693,1.9692936523423,1.19208812868759,0.360586348559907,0.295379054349154,0.403865799792591,0.228620419965,0,0.0974578807397524,0.0962118416403295,0.116876902181569,0.453460767230423,0,0,0,1.9318959403219,3.00291960721891,7.3260649706906,2.78678892802786,0,181.285341480078,198.8605021711,219.991877160728,329.614403735193,339.800929806239,367.121434131394,290.259675099676,378.720131911569,384.71790522759,307.549625180581,5.81209146471389,11.5717213286299,5.63420898988643,6.07766792670735,5.8691685535835,4.41224420280034,6.22290837844523,6.18105171716683,7.70206103020357,4.54854981174835,4.56262739802432,5.65879024158229,4.49479235855436,6.08238947846258,4.47996657853783,7.1444053692461,4.51948871184936,4.82273051159263,2.88460130562315,5.5935589651071,4.80016953339582,5.14679837862079,6.91464950847231,5.0871245821315,5.45834406408918,3.9768865709088,4.93905526756486,6.05060336307039,6.3827933507555,6.17256498823512,3.6776855618494,3.25064791839359,4.50154147486658,5.88759996506671,5.40138510747196,6.24526444844865,6.55008503647143,3.00819475667618,2.29545998482612,4.19123696327079,5.10109238364927|short_description=p1@Scn2b}} | ||
|EntrezGene=72821 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q56A07,Q1MXF8 | |||
|association_with_transcript=0bp_to_ENSMUST00000170998,NM_001014761,uc009pfg.1_5end | |||
|description=CAGE_peak_1_at_Scn2b_5end | |||
|id=chr9:44925896..44925959,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.19e-11!23;CL:0000337!1.19e-11!23;CL:0000540!1.07e-08!33;CL:0000047!1.07e-08!33;CL:0000031!1.07e-08!33;CL:0000404!1.07e-08!33;CL:0000221!3.34e-07!44;CL:0000133!3.34e-07!44;CL:0002319!3.62e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.71e-12,23;CL:0000337,3.71e-12,23;CL:0000540,2.71e-08,33;CL:0000047,2.71e-08,33;CL:0000031,2.71e-08,33;CL:0000404,2.71e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.48e-25!52;UBERON:0005068!1.48e-25!52;UBERON:0006241!1.48e-25!52;UBERON:0007135!1.48e-25!52;UBERON:0002346!1.90e-25!71;UBERON:0003075!1.90e-25!71;UBERON:0007284!1.90e-25!71;UBERON:0001017!2.48e-25!73;UBERON:0005743!2.48e-25!73;UBERON:0000033!3.29e-25!63;UBERON:0000955!6.73e-25!50;UBERON:0006238!6.73e-25!50;UBERON:0000073!1.25e-24!75;UBERON:0001016!1.25e-24!75;UBERON:0002616!2.80e-24!49;UBERON:0004121!2.35e-21!102;UBERON:0000924!2.35e-21!102;UBERON:0006601!2.35e-21!102;UBERON:0003056!4.35e-21!49;UBERON:0003080!4.11e-20!40;UBERON:0002780!1.81e-19!39;UBERON:0001890!1.81e-19!39;UBERON:0006240!1.81e-19!39;UBERON:0002020!5.35e-17!34;UBERON:0000153!1.45e-14!94;UBERON:0002791!2.63e-14!29;UBERON:0003528!2.63e-14!29;UBERON:0001893!2.63e-14!29;UBERON:0007811!1.63e-12!86;UBERON:0000956!5.19e-10!21;UBERON:0001869!5.19e-10!21;UBERON:0000203!5.19e-10!21;UBERON:0002619!4.48e-09!17;UBERON:0002021!6.44e-08!10;UBERON:0000411!6.44e-08!10;UBERON:0001950!6.44e-08!10;UBERON:0000468!7.14e-08!333;UBERON:0000025!3.16e-07!114;UBERON:0004111!5.81e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.53e-28,54;UBERON:0002346,1.95e-26,64;UBERON:0003075,1.95e-26,64;UBERON:0007284,1.95e-26,64;UBERON:0001049,2.75e-26,52;UBERON:0005068,2.75e-26,52;UBERON:0006241,2.75e-26,52;UBERON:0007135,2.75e-26,52;UBERON:0001017,4.03e-25,73;UBERON:0001016,2.03e-24,75;UBERON:0000955,3.32e-23,47;UBERON:0006238,3.32e-23,47;UBERON:0002616,1.43e-22,46;UBERON:0003056,4.50e-22,49;UBERON:0003080,4.76e-21,40;UBERON:0010371,5.18e-21,73;UBERON:0002780,2.27e-20,39;UBERON:0001890,2.27e-20,39;UBERON:0006240,2.27e-20,39;UBERON:0004121,4.21e-20,95;UBERON:0000924,4.21e-20,95;UBERON:0006601,4.21e-20,95;UBERON:0010314,1.03e-18,92;UBERON:0002020,8.92e-18,34;UBERON:0003528,5.99e-15,29;UBERON:0002791,5.99e-15,29;UBERON:0001893,5.99e-15,29;UBERON:0000956,1.95e-10,21;UBERON:0001869,1.95e-10,21;UBERON:0000203,1.95e-10,21;UBERON:0002619,1.87e-09,17;UBERON:0002021,3.07e-08,10;UBERON:0000411,3.07e-08,10;UBERON:0001950,3.07e-08,10 | |||
|phase1_expression=5.2849119544582,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,55.1930953080443,0,0,0,0,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,3.92445281484804,3.29529274101708,2.52758868796568,1.39986421625363,1.43752564364972,0,0,0,0,2.57880095944881,0,11.3297218081375,25.3915670050576,10.1413024560989,0.677689064138264,1.77858959222228,0,0,0,1.19840044207362,2.30530983192933,4.76972216618997,7.69533848490637,4.6271491497304,56.8445458963569,62.5057970893066,7.96190194897201,6.42164655822184,9.19218786610021,350.168501578056,360.078293400229,377.257645677334,15.2988093767025,16.1933129176265,10.4182674111352,290.629501960438,232.983720553115,227.822187435224,31.8198872311561,40.148813985347,13.6071595452469,1.36307147999731,1.36028808192214,0.289864488701678,0,0,0,0,0,11.3759980306719,0,0,0,3.38024207464033,0,0,0,0,0,0,7.4219521817389,0,4.89859058913922,4.8575891494518,3.04465478312141,4.38169444786511,3.76806601381556,2.11659672844269,2.26199864393416,0,1.59059292611903,0,2.58826959915855,0.441683036920787,1.45462575940567,0,337.283478157302,222.851296049516,1.27728527604296,0,0,0,221.240774400923,206.332771871201,10.8062742817063,263.691493731683,186.672283851141,277.189251442453,226.651044505657,3.1570202793598,2.98576729464223,8.59257378674494,7.57590681191306,5.98554037628437,3.44853156650209,5.58192602396583,5.27466862425003,2.65342346690179,4.22775276940004,3.27956035959051,25.8703370739016,10.5628316537093,9.64441008855878,12.4925298156404,10.302199424096,9.73165372289593,9.05455632957633,5.96768195583036,6.17006227137329,0,0,0,3.10688658803253,3.28336483973535,2.52086886045421,4.7348947117042,2.55793501271625,1.85120535464854,1.16266972375204,2.14618721119695,0.116765342367169,0.987359099480883,0.492502392237286,0.243206428637567,0.438599962275997,1.09775057645525,0.268412837520744,231.529233369104,7.51203670368776,0,1.58670339998127,8.95810652247983,6.96710015581316,5.41243337552792,3.02525286935014,2.89091456998331,2.47293313946327,1.89811624617805,1.31759163779209,3.01602250560323,1.59165177632921,1.55971269695296,0,0.648414149624083,0.796565093017469,7.96605184002943,4.56994050438915,6.76246414038483,4.48032921259691,5.04276466635827,1.1221731182451,2.40298841072178,0.442830443938806,0.156998727841375,0.493588655687202,0.296452627087149,2.50267658574141,1.37591296579242,0.674586337154561,1.01430060694251,0.482354319504834,0.25462585178142,0.575392274901621,0,0,1.43768206527355,0.372140947668503,0,0,0,0,0.554259570499814,6.44270800019648,6.51859905768104,7.63852885988347,4.92849521405854,2.68010011906905,1.42826184531608,0.390267295715598,0.157635144106191,0,0.159454768657487,0.327726629431476,0.518054945597687,0.144649058581512,0,0,0,0.275936746304732,161.995545297682,156.94644834696,0,0,1.89304931649754,1.95219372148319,1.29254038639679,0.238968797952552,0.445597348164788,0.849229592366497,2.02405350837447,3.50707029493574,2.37172666767914,90.6126112309496,1.98716119291576,9.97167380536629,1.79175655288934,8.74341651754438,0,6.31229654002952,5.74414758233027,2.64047111658257,2.06711325016541,2.15204603560749,0.775284879504663,1.09060118843252,2.13898427030833,1.58018378967908,0,0,24.5116516142727,11.3438489239725,13.4533031134065,11.1455258216428,15.7832807941623,13.5560301377574,15.7967059778036,9.74287837166718,0.23467170806371,0,2.20528398054962,0.16488625294148,0,1.08563264870681,0.238744688006273,0.164140899745061,1.7488850197791,107.732100468106,0.170870880797853,5.15967169908056,1.11116716421827,0.188368457004691,0.27338845544205,0.228778173206523,0,0,0,0,6.32671987162271,5.08298667817122,4.53622431451565,3.76358932826044,3.27543845619266,2.56242258131159,1.65306911450672,1.04702376793612,1.03691978633434,1.86401793926078,0,5.23307911153926,3.97100377097034,4.86127970860119,4.77891346867605,5.57555214119568,1.87771581833206,2.47388331203505,0.734015410979976,0.241584120826006,0,0,4.25722952109345,4.62199307241723,1.94881234466693,1.9692936523423,1.19208812868759,0.360586348559907,0.295379054349154,0.403865799792591,0.228620419965,0,0.0974578807397524,0.0962118416403295,0.116876902181569,0.453460767230423,0,0,0,1.9318959403219,3.00291960721891,7.3260649706906,2.78678892802786,0,181.285341480078,198.8605021711,219.991877160728,329.614403735193,339.800929806239,367.121434131394,290.259675099676,378.720131911569,384.71790522759,307.549625180581,5.81209146471389,11.5717213286299,5.63420898988643,6.07766792670735,5.8691685535835,4.41224420280034,6.22290837844523,6.18105171716683,7.70206103020357,4.54854981174835,4.56262739802432,5.65879024158229,4.49479235855436,6.08238947846258,4.47996657853783,7.1444053692461,4.51948871184936,4.82273051159263,2.88460130562315,5.5935589651071,4.80016953339582,5.14679837862079,6.91464950847231,5.0871245821315,5.45834406408918,3.9768865709088,4.93905526756486,6.05060336307039,6.3827933507555,6.17256498823512,3.6776855618494,3.25064791839359,4.50154147486658,5.88759996506671,5.40138510747196,6.24526444844865,6.55008503647143,3.00819475667618,2.29545998482612,4.19123696327079,5.10109238364927 | |||
|short_description=p1@Scn2b | |||
}} |
Revision as of 18:00, 14 September 2013
Short description: | p1@Scn2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scn2b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000170998, NM_001014761, uc009pfg.1_5end |
EntrezGene: | Scn2b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.71e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.71e-12 | 23 |
neuron | 2.71e-08 | 33 |
neuronal stem cell | 2.71e-08 | 33 |
neuroblast | 2.71e-08 | 33 |
electrically signaling cell | 2.71e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.53e-28 | 54 |
neurectoderm | 1.95e-26 | 64 |
neural plate | 1.95e-26 | 64 |
presumptive neural plate | 1.95e-26 | 64 |
neural tube | 2.75e-26 | 52 |
neural rod | 2.75e-26 | 52 |
future spinal cord | 2.75e-26 | 52 |
neural keel | 2.75e-26 | 52 |
central nervous system | 4.03e-25 | 73 |
nervous system | 2.03e-24 | 75 |
brain | 3.32e-23 | 47 |
future brain | 3.32e-23 | 47 |
regional part of brain | 1.43e-22 | 46 |
pre-chordal neural plate | 4.50e-22 | 49 |
anterior neural tube | 4.76e-21 | 40 |
ecto-epithelium | 5.18e-21 | 73 |
regional part of forebrain | 2.27e-20 | 39 |
forebrain | 2.27e-20 | 39 |
future forebrain | 2.27e-20 | 39 |
ectoderm-derived structure | 4.21e-20 | 95 |
ectoderm | 4.21e-20 | 95 |
presumptive ectoderm | 4.21e-20 | 95 |
structure with developmental contribution from neural crest | 1.03e-18 | 92 |
gray matter | 8.92e-18 | 34 |
brain grey matter | 5.99e-15 | 29 |
regional part of telencephalon | 5.99e-15 | 29 |
telencephalon | 5.99e-15 | 29 |
cerebral cortex | 1.95e-10 | 21 |
cerebral hemisphere | 1.95e-10 | 21 |
pallium | 1.95e-10 | 21 |
regional part of cerebral cortex | 1.87e-09 | 17 |
occipital lobe | 3.07e-08 | 10 |
visual cortex | 3.07e-08 | 10 |
neocortex | 3.07e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.