FFCP PHASE1:Mm9::chrX:147531053..147531073,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69499|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000166689_5end|description=CAGE_peak_1_at_Tsr2_5end|id=chrX:147531053..147531073,-|ontology_enrichment_celltype=CL:0000034!3.63e-13!97;CL:0000723!3.02e-12!91;CL:0000048!3.02e-12!91;CL:0000540!6.49e-12!33;CL:0000047!6.49e-12!33;CL:0000031!6.49e-12!33;CL:0000404!6.49e-12!33;CL:0000117!1.01e-11!23;CL:0000337!1.01e-11!23;CL:0000221!4.76e-11!44;CL:0000133!4.76e-11!44;CL:0002319!6.61e-11!43;CL:0000393!7.27e-11!39;CL:0000211!7.27e-11!39;CL:0000055!4.05e-10!50;CL:0000548!9.21e-09!115;CL:0000004!9.21e-09!115;CL:0000255!9.21e-09!115;CL:0000144!2.50e-08!121;CL:0000012!2.50e-08!121;CL:0002371!2.42e-07!118|ontology_enrichment_celltype_v019_2=CL:0000034,3.60e-13,97;CL:0000723,3.00e-12,91;CL:0000048,3.00e-12,91;CL:0000540,6.49e-12,33;CL:0000047,6.49e-12,33;CL:0000031,6.49e-12,33;CL:0000404,6.49e-12,33;CL:0000117,1.01e-11,23;CL:0000337,1.01e-11,23;CL:0000221,4.76e-11,44;CL:0000133,4.76e-11,44;CL:0002319,6.61e-11,43;CL:0000393,7.27e-11,39;CL:0000211,7.27e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.21e-27!73;UBERON:0005743!3.21e-27!73;UBERON:0000073!7.05e-27!75;UBERON:0001016!7.05e-27!75;UBERON:0002346!9.56e-25!71;UBERON:0003075!9.56e-25!71;UBERON:0007284!9.56e-25!71;UBERON:0004121!1.68e-23!102;UBERON:0000924!1.68e-23!102;UBERON:0006601!1.68e-23!102;UBERON:0001049!2.56e-23!52;UBERON:0005068!2.56e-23!52;UBERON:0006241!2.56e-23!52;UBERON:0007135!2.56e-23!52;UBERON:0000955!2.74e-23!50;UBERON:0006238!2.74e-23!50;UBERON:0002616!1.01e-22!49;UBERON:0000033!1.02e-22!63;UBERON:0000153!4.41e-21!94;UBERON:0007811!1.23e-20!86;UBERON:0003056!1.03e-19!49;UBERON:0003080!6.31e-19!40;UBERON:0002780!2.71e-18!39;UBERON:0001890!2.71e-18!39;UBERON:0006240!2.71e-18!39;UBERON:0002020!5.64e-17!34;UBERON:0002791!4.65e-15!29;UBERON:0003528!4.65e-15!29;UBERON:0001893!4.65e-15!29;UBERON:0000956!9.94e-11!21;UBERON:0001869!9.94e-11!21;UBERON:0000203!9.94e-11!21;UBERON:0002619!3.83e-09!17;UBERON:0002021!1.87e-07!10;UBERON:0000411!1.87e-07!10;UBERON:0001950!1.87e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.21e-27,73;UBERON:0001016,7.05e-27,75;UBERON:0002346,6.97e-25,64;UBERON:0003075,6.97e-25,64;UBERON:0007284,6.97e-25,64;UBERON:0000073,7.03e-25,54;UBERON:0001049,2.56e-23,52;UBERON:0005068,2.56e-23,52;UBERON:0006241,2.56e-23,52;UBERON:0007135,2.56e-23,52;UBERON:0004121,4.84e-23,95;UBERON:0000924,4.84e-23,95;UBERON:0006601,4.84e-23,95;UBERON:0010371,3.17e-21,73;UBERON:0000955,3.67e-21,47;UBERON:0006238,3.67e-21,47;UBERON:0002616,1.32e-20,46;UBERON:0003056,1.03e-19,49;UBERON:0003080,6.31e-19,40;UBERON:0002780,2.71e-18,39;UBERON:0001890,2.71e-18,39;UBERON:0006240,2.71e-18,39;UBERON:0002020,5.64e-17,34;UBERON:0003528,4.65e-15,29;UBERON:0002791,4.65e-15,29;UBERON:0001893,4.65e-15,29;UBERON:0010314,1.48e-13,92;UBERON:0000956,9.94e-11,21;UBERON:0001869,9.94e-11,21;UBERON:0000203,9.94e-11,21;UBERON:0002619,3.83e-09,17;UBERON:0002021,1.87e-07,10;UBERON:0000411,1.87e-07,10;UBERON:0001950,1.87e-07,10|phase1_expression=20.0186058880992,2.44282785347553,0.909998478779072,2.11724947914781,3.00537437967808,9.40123922706583,9.81173090501208,14.8491821957813,38.01295498095,42.3656792642808,44.8591076750823,44.7521811963837,18.1472773727078,22.1173618120063,13.6575002344422,12.5534665781692,16.0899231969474,12.6184866143295,11.2433835556706,9.76096199135469,19.474913444595,17.3759164601549,16.4555867157529,8.47959840805055,7.57050627521661,4.01962374880514,5.1691439539089,5.17130958446134,6.08074942260396,7.30887376303799,10.4213340007993,16.5107975099504,15.9916844771988,15.8481681015439,24.8412392986096,22.275442478038,19.8044275574498,0,3.906676722619,2.09409497589519,1.17646297606203,0.683045484958446,1.45653105909346,33.7403472174547,31.2240948156105,20.9243297464317,15.6478268869608,17.8780628231966,19.3323840806335,18.2764105129826,11.6188729949051,14.3752564364972,16.7782606057736,19.5847778343063,24.5348473373999,7.71778308107841,9.45560351797897,12.8918023069361,32.5729501983952,25.9205579843296,26.6209189472595,13.5537812827653,14.2287167377782,13.0485459005803,14.8329954385046,16.3410426437603,16.4780060785123,18.0582603501131,23.226473157099,27.2711995430015,25.86997024622,27.9937964715728,34.8972294703549,28.5403562170843,26.6450409430697,25.7381260250806,46.2486700197433,53.2456199815233,59.29212183691,32.0483679184371,29.7334841707831,28.6502353806218,62.5369917763093,69.2198010338966,62.3416850929385,23.2756582524197,25.1997875014412,23.1135312823373,24.9896437999507,10.8067330952703,12.4641730141721,14.6272059086836,25.1589393471868,21.5881276655127,9.09686984426737,12.5447528387254,12.9208866521212,16.0204503223374,24.9394564418754,20.8470348961101,19.4363919291819,25.6652954828636,43.3168907501298,56.8853362522665,8.22665955842614,5.82727690592727,5.56076889516262,12.1034912502204,13.2058320660058,21.3756680253348,18.2159593104443,17.0500667854799,16.3737003051802,14.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| ||
|EntrezGene=69499 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000166689_5end | |||
|description=CAGE_peak_1_at_Tsr2_5end | |||
|id=chrX:147531053..147531073,- | |||
|ontology_enrichment_celltype=CL:0000034!3.63e-13!97;CL:0000723!3.02e-12!91;CL:0000048!3.02e-12!91;CL:0000540!6.49e-12!33;CL:0000047!6.49e-12!33;CL:0000031!6.49e-12!33;CL:0000404!6.49e-12!33;CL:0000117!1.01e-11!23;CL:0000337!1.01e-11!23;CL:0000221!4.76e-11!44;CL:0000133!4.76e-11!44;CL:0002319!6.61e-11!43;CL:0000393!7.27e-11!39;CL:0000211!7.27e-11!39;CL:0000055!4.05e-10!50;CL:0000548!9.21e-09!115;CL:0000004!9.21e-09!115;CL:0000255!9.21e-09!115;CL:0000144!2.50e-08!121;CL:0000012!2.50e-08!121;CL:0002371!2.42e-07!118 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,3.60e-13,97;CL:0000723,3.00e-12,91;CL:0000048,3.00e-12,91;CL:0000540,6.49e-12,33;CL:0000047,6.49e-12,33;CL:0000031,6.49e-12,33;CL:0000404,6.49e-12,33;CL:0000117,1.01e-11,23;CL:0000337,1.01e-11,23;CL:0000221,4.76e-11,44;CL:0000133,4.76e-11,44;CL:0002319,6.61e-11,43;CL:0000393,7.27e-11,39;CL:0000211,7.27e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.21e-27!73;UBERON:0005743!3.21e-27!73;UBERON:0000073!7.05e-27!75;UBERON:0001016!7.05e-27!75;UBERON:0002346!9.56e-25!71;UBERON:0003075!9.56e-25!71;UBERON:0007284!9.56e-25!71;UBERON:0004121!1.68e-23!102;UBERON:0000924!1.68e-23!102;UBERON:0006601!1.68e-23!102;UBERON:0001049!2.56e-23!52;UBERON:0005068!2.56e-23!52;UBERON:0006241!2.56e-23!52;UBERON:0007135!2.56e-23!52;UBERON:0000955!2.74e-23!50;UBERON:0006238!2.74e-23!50;UBERON:0002616!1.01e-22!49;UBERON:0000033!1.02e-22!63;UBERON:0000153!4.41e-21!94;UBERON:0007811!1.23e-20!86;UBERON:0003056!1.03e-19!49;UBERON:0003080!6.31e-19!40;UBERON:0002780!2.71e-18!39;UBERON:0001890!2.71e-18!39;UBERON:0006240!2.71e-18!39;UBERON:0002020!5.64e-17!34;UBERON:0002791!4.65e-15!29;UBERON:0003528!4.65e-15!29;UBERON:0001893!4.65e-15!29;UBERON:0000956!9.94e-11!21;UBERON:0001869!9.94e-11!21;UBERON:0000203!9.94e-11!21;UBERON:0002619!3.83e-09!17;UBERON:0002021!1.87e-07!10;UBERON:0000411!1.87e-07!10;UBERON:0001950!1.87e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.21e-27,73;UBERON:0001016,7.05e-27,75;UBERON:0002346,6.97e-25,64;UBERON:0003075,6.97e-25,64;UBERON:0007284,6.97e-25,64;UBERON:0000073,7.03e-25,54;UBERON:0001049,2.56e-23,52;UBERON:0005068,2.56e-23,52;UBERON:0006241,2.56e-23,52;UBERON:0007135,2.56e-23,52;UBERON:0004121,4.84e-23,95;UBERON:0000924,4.84e-23,95;UBERON:0006601,4.84e-23,95;UBERON:0010371,3.17e-21,73;UBERON:0000955,3.67e-21,47;UBERON:0006238,3.67e-21,47;UBERON:0002616,1.32e-20,46;UBERON:0003056,1.03e-19,49;UBERON:0003080,6.31e-19,40;UBERON:0002780,2.71e-18,39;UBERON:0001890,2.71e-18,39;UBERON:0006240,2.71e-18,39;UBERON:0002020,5.64e-17,34;UBERON:0003528,4.65e-15,29;UBERON:0002791,4.65e-15,29;UBERON:0001893,4.65e-15,29;UBERON:0010314,1.48e-13,92;UBERON:0000956,9.94e-11,21;UBERON:0001869,9.94e-11,21;UBERON:0000203,9.94e-11,21;UBERON:0002619,3.83e-09,17;UBERON:0002021,1.87e-07,10;UBERON:0000411,1.87e-07,10;UBERON:0001950,1.87e-07,10 | |||
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| |||
|short_description=p1@Tsr2 | |||
}} |
Revision as of 19:29, 14 September 2013
Short description: | p1@Tsr2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tsr2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000166689_5end |
EntrezGene: | Tsr2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 3.60e-13 | 97 |
somatic stem cell | 3.00e-12 | 91 |
multi fate stem cell | 3.00e-12 | 91 |
neuron | 6.49e-12 | 33 |
neuronal stem cell | 6.49e-12 | 33 |
neuroblast | 6.49e-12 | 33 |
electrically signaling cell | 6.49e-12 | 33 |
CNS neuron (sensu Vertebrata) | 1.01e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.01e-11 | 23 |
ectodermal cell | 4.76e-11 | 44 |
neurectodermal cell | 4.76e-11 | 44 |
neural cell | 6.61e-11 | 43 |
electrically responsive cell | 7.27e-11 | 39 |
electrically active cell | 7.27e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.21e-27 | 73 |
nervous system | 7.05e-27 | 75 |
neurectoderm | 6.97e-25 | 64 |
neural plate | 6.97e-25 | 64 |
presumptive neural plate | 6.97e-25 | 64 |
regional part of nervous system | 7.03e-25 | 54 |
neural tube | 2.56e-23 | 52 |
neural rod | 2.56e-23 | 52 |
future spinal cord | 2.56e-23 | 52 |
neural keel | 2.56e-23 | 52 |
ectoderm-derived structure | 4.84e-23 | 95 |
ectoderm | 4.84e-23 | 95 |
presumptive ectoderm | 4.84e-23 | 95 |
ecto-epithelium | 3.17e-21 | 73 |
brain | 3.67e-21 | 47 |
future brain | 3.67e-21 | 47 |
regional part of brain | 1.32e-20 | 46 |
pre-chordal neural plate | 1.03e-19 | 49 |
anterior neural tube | 6.31e-19 | 40 |
regional part of forebrain | 2.71e-18 | 39 |
forebrain | 2.71e-18 | 39 |
future forebrain | 2.71e-18 | 39 |
gray matter | 5.64e-17 | 34 |
brain grey matter | 4.65e-15 | 29 |
regional part of telencephalon | 4.65e-15 | 29 |
telencephalon | 4.65e-15 | 29 |
structure with developmental contribution from neural crest | 1.48e-13 | 92 |
cerebral cortex | 9.94e-11 | 21 |
cerebral hemisphere | 9.94e-11 | 21 |
pallium | 9.94e-11 | 21 |
regional part of cerebral cortex | 3.83e-09 | 17 |
occipital lobe | 1.87e-07 | 10 |
visual cortex | 1.87e-07 | 10 |
neocortex | 1.87e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.