FFCP PHASE1:Mm9::chrX:20281048..20281077,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=236733|HGNC=|MCL_coexpression_id=483|UniProt=|association_with_transcript=0bp_to_ENSMUST00000127294_5end|description=CAGE_peak_1_at_Usp11_5end|id=chrX:20281048..20281077,+|ontology_enrichment_celltype=CL:0000117!3.26e-14!23;CL:0000337!3.26e-14!23;CL:0000540!3.38e-14!33;CL:0000047!3.38e-14!33;CL:0000031!3.38e-14!33;CL:0000404!3.38e-14!33;CL:0000221!4.96e-12!44;CL:0000133!4.96e-12!44;CL:0002319!6.84e-12!43;CL:0000393!1.44e-09!39;CL:0000211!1.44e-09!39;CL:0000055!1.04e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.23e-14,23;CL:0000337,3.23e-14,23;CL:0000540,3.36e-14,33;CL:0000047,3.36e-14,33;CL:0000031,3.36e-14,33;CL:0000404,3.36e-14,33;CL:0000221,4.93e-12,44;CL:0000133,4.93e-12,44;CL:0002319,6.80e-12,43;CL:0000393,1.41e-09,39;CL:0000211,1.41e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.89e-30!73;UBERON:0005743!1.89e-30!73;UBERON:0000073!1.24e-28!75;UBERON:0001016!1.24e-28!75;UBERON:0001049!3.45e-25!52;UBERON:0005068!3.45e-25!52;UBERON:0006241!3.45e-25!52;UBERON:0007135!3.45e-25!52;UBERON:0002346!4.41e-25!71;UBERON:0003075!4.41e-25!71;UBERON:0007284!4.41e-25!71;UBERON:0000955!2.06e-24!50;UBERON:0006238!2.06e-24!50;UBERON:0000033!5.35e-24!63;UBERON:0002616!1.15e-23!49;UBERON:0000153!1.36e-23!94;UBERON:0004121!2.97e-23!102;UBERON:0000924!2.97e-23!102;UBERON:0006601!2.97e-23!102;UBERON:0007811!1.23e-22!86;UBERON:0003056!2.28e-21!49;UBERON:0003080!1.82e-20!40;UBERON:0002780!9.83e-20!39;UBERON:0001890!9.83e-20!39;UBERON:0006240!9.83e-20!39;UBERON:0002020!1.25e-17!34;UBERON:0002791!1.14e-14!29;UBERON:0003528!1.14e-14!29;UBERON:0001893!1.14e-14!29;UBERON:0000956!9.56e-10!21;UBERON:0001869!9.56e-10!21;UBERON:0000203!9.56e-10!21;UBERON:0002619!3.84e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.85e-30,73;UBERON:0001016,1.22e-28,75;UBERON:0000073,6.52e-27,54;UBERON:0002346,7.82e-26,64;UBERON:0003075,7.82e-26,64;UBERON:0007284,7.82e-26,64;UBERON:0001049,3.40e-25,52;UBERON:0005068,3.40e-25,52;UBERON:0006241,3.40e-25,52;UBERON:0007135,3.40e-25,52;UBERON:0004121,2.80e-23,95;UBERON:0000924,2.80e-23,95;UBERON:0006601,2.80e-23,95;UBERON:0000955,3.32e-22,47;UBERON:0006238,3.32e-22,47;UBERON:0002616,1.78e-21,46;UBERON:0003056,2.26e-21,49;UBERON:0010371,4.48e-21,73;UBERON:0003080,1.80e-20,40;UBERON:0002780,9.72e-20,39;UBERON:0001890,9.72e-20,39;UBERON:0006240,9.72e-20,39;UBERON:0010314,8.95e-19,92;UBERON:0002020,1.24e-17,34;UBERON:0003528,1.13e-14,29;UBERON:0002791,1.13e-14,29;UBERON:0001893,1.13e-14,29;UBERON:0000956,9.51e-10,21;UBERON:0001869,9.51e-10,21;UBERON:0000203,9.51e-10,21;UBERON:0002619,3.83e-08,17|phase1_expression=41.6387002472464,1.74487703819681,0.454999239389536,0.30246421130683,0,7.21880869221126,5.60670337429262,8.52213934714403,2.81577444303333,5.61754863172784,1.54096171402954,0.797721589953364,3.59521532855532,4.80812213304486,6.99530499812892,6.2767332890846,3.49780939064073,20.5050407482854,16.5908464662944,22.0682618934976,16.2432684188543,40.2128352363585,33.6947727989227,5.91971964335605,4.35877634027623,0,0.86152399231815,2.80112602491656,1.90023419456374,2.52030129759931,1.55211357458713,1.27006134691926,1.84519436275371,0,2.59966457776147,1.66234645358492,5.9209113316087,2.09265815368454,0.7813353445238,2.09409497589519,0.588231488031014,0.683045484958446,0.971020706062307,7.55380907853464,7.40051597902456,10.2786181210542,27.3836970521814,17.6600376668162,23.9457939180574,17.3042610176112,26.5974201088189,24.4379359420452,18.9594344845242,5.07753499407941,31.5928171193916,1.02903774414379,2.57880095944881,0.515672092277442,58.2671407275642,70.3558002431804,51.9741750875067,13.8926258148344,14.2287167377782,1.3498495759221,0.988866362566974,0.7104801149461,11.6844043102178,14.9845139075406,36.4987435325841,39.4217339928537,35.1242685456808,56.5588949119531,60.7388487616937,42.3818165283741,50.8939451106835,42.284064184061,88.092704799511,68.3127258755754,73.2703163632281,63.305418110493,72.5497013767109,57.8213841318004,69.7957497503452,103.548320245829,98.8604663115961,50.9707452869445,53.95886702286,60.2070210015721,1.51452386666368,8.16172849153284,11.0148505706638,0.860423876981386,0,0.539703191637817,0.649776417447669,0,4.21333260395256,6.30592193538814,5.19572009205738,3.18005617059306,24.6475984609191,12.8326477414318,45.8649431471962,49.7746692207332,1.73192832808971,2.78695852022608,4.04419556011827,3.65388415100992,17.0899003207133,20.1881309128162,30.1864468573076,23.1393763517227,17.7573932887165,18.2374395068673,17.8734834846271,15.8339905075391,7.91023896749996,3.03658649531814,5.30766331169925,15.0443170451091,8.17113618303456,8.727754556434,3.72783522436244,28.9852989041432,21.3635640949724,3.0654846625031,12.8202183221335,14.9975682748352,15.3754974758408,76.0936448176499,59.4750783664214,40.5863557324552,61.7076336682581,59.3259861006367,62.9597775015467,65.3832290163063,23.3212143217224,10.5745925018579,11.8779696463827,7.15502310014011,36.3036035865943,36.0946303960553,33.31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| ||
|EntrezGene=236733 | |||
|HGNC= | |||
|MCL_coexpression_id=483 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000127294_5end | |||
|description=CAGE_peak_1_at_Usp11_5end | |||
|id=chrX:20281048..20281077,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.26e-14!23;CL:0000337!3.26e-14!23;CL:0000540!3.38e-14!33;CL:0000047!3.38e-14!33;CL:0000031!3.38e-14!33;CL:0000404!3.38e-14!33;CL:0000221!4.96e-12!44;CL:0000133!4.96e-12!44;CL:0002319!6.84e-12!43;CL:0000393!1.44e-09!39;CL:0000211!1.44e-09!39;CL:0000055!1.04e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.23e-14,23;CL:0000337,3.23e-14,23;CL:0000540,3.36e-14,33;CL:0000047,3.36e-14,33;CL:0000031,3.36e-14,33;CL:0000404,3.36e-14,33;CL:0000221,4.93e-12,44;CL:0000133,4.93e-12,44;CL:0002319,6.80e-12,43;CL:0000393,1.41e-09,39;CL:0000211,1.41e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.89e-30!73;UBERON:0005743!1.89e-30!73;UBERON:0000073!1.24e-28!75;UBERON:0001016!1.24e-28!75;UBERON:0001049!3.45e-25!52;UBERON:0005068!3.45e-25!52;UBERON:0006241!3.45e-25!52;UBERON:0007135!3.45e-25!52;UBERON:0002346!4.41e-25!71;UBERON:0003075!4.41e-25!71;UBERON:0007284!4.41e-25!71;UBERON:0000955!2.06e-24!50;UBERON:0006238!2.06e-24!50;UBERON:0000033!5.35e-24!63;UBERON:0002616!1.15e-23!49;UBERON:0000153!1.36e-23!94;UBERON:0004121!2.97e-23!102;UBERON:0000924!2.97e-23!102;UBERON:0006601!2.97e-23!102;UBERON:0007811!1.23e-22!86;UBERON:0003056!2.28e-21!49;UBERON:0003080!1.82e-20!40;UBERON:0002780!9.83e-20!39;UBERON:0001890!9.83e-20!39;UBERON:0006240!9.83e-20!39;UBERON:0002020!1.25e-17!34;UBERON:0002791!1.14e-14!29;UBERON:0003528!1.14e-14!29;UBERON:0001893!1.14e-14!29;UBERON:0000956!9.56e-10!21;UBERON:0001869!9.56e-10!21;UBERON:0000203!9.56e-10!21;UBERON:0002619!3.84e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.85e-30,73;UBERON:0001016,1.22e-28,75;UBERON:0000073,6.52e-27,54;UBERON:0002346,7.82e-26,64;UBERON:0003075,7.82e-26,64;UBERON:0007284,7.82e-26,64;UBERON:0001049,3.40e-25,52;UBERON:0005068,3.40e-25,52;UBERON:0006241,3.40e-25,52;UBERON:0007135,3.40e-25,52;UBERON:0004121,2.80e-23,95;UBERON:0000924,2.80e-23,95;UBERON:0006601,2.80e-23,95;UBERON:0000955,3.32e-22,47;UBERON:0006238,3.32e-22,47;UBERON:0002616,1.78e-21,46;UBERON:0003056,2.26e-21,49;UBERON:0010371,4.48e-21,73;UBERON:0003080,1.80e-20,40;UBERON:0002780,9.72e-20,39;UBERON:0001890,9.72e-20,39;UBERON:0006240,9.72e-20,39;UBERON:0010314,8.95e-19,92;UBERON:0002020,1.24e-17,34;UBERON:0003528,1.13e-14,29;UBERON:0002791,1.13e-14,29;UBERON:0001893,1.13e-14,29;UBERON:0000956,9.51e-10,21;UBERON:0001869,9.51e-10,21;UBERON:0000203,9.51e-10,21;UBERON:0002619,3.83e-08,17 | |||
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| |||
|short_description=p1@Usp11 | |||
}} |
Revision as of 19:43, 14 September 2013
Short description: | p1@Usp11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Usp11_5end |
Coexpression cluster: | MCL_coexpression_mm9:483 |
Association with transcript: | 0bp_to_ENSMUST00000127294_5end |
EntrezGene: | Usp11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.23e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.23e-14 | 23 |
neuron | 3.36e-14 | 33 |
neuronal stem cell | 3.36e-14 | 33 |
neuroblast | 3.36e-14 | 33 |
electrically signaling cell | 3.36e-14 | 33 |
ectodermal cell | 4.93e-12 | 44 |
neurectodermal cell | 4.93e-12 | 44 |
neural cell | 6.80e-12 | 43 |
electrically responsive cell | 1.41e-09 | 39 |
electrically active cell | 1.41e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.85e-30 | 73 |
nervous system | 1.22e-28 | 75 |
regional part of nervous system | 6.52e-27 | 54 |
neurectoderm | 7.82e-26 | 64 |
neural plate | 7.82e-26 | 64 |
presumptive neural plate | 7.82e-26 | 64 |
neural tube | 3.40e-25 | 52 |
neural rod | 3.40e-25 | 52 |
future spinal cord | 3.40e-25 | 52 |
neural keel | 3.40e-25 | 52 |
ectoderm-derived structure | 2.80e-23 | 95 |
ectoderm | 2.80e-23 | 95 |
presumptive ectoderm | 2.80e-23 | 95 |
brain | 3.32e-22 | 47 |
future brain | 3.32e-22 | 47 |
regional part of brain | 1.78e-21 | 46 |
pre-chordal neural plate | 2.26e-21 | 49 |
ecto-epithelium | 4.48e-21 | 73 |
anterior neural tube | 1.80e-20 | 40 |
regional part of forebrain | 9.72e-20 | 39 |
forebrain | 9.72e-20 | 39 |
future forebrain | 9.72e-20 | 39 |
structure with developmental contribution from neural crest | 8.95e-19 | 92 |
gray matter | 1.24e-17 | 34 |
brain grey matter | 1.13e-14 | 29 |
regional part of telencephalon | 1.13e-14 | 29 |
telencephalon | 1.13e-14 | 29 |
cerebral cortex | 9.51e-10 | 21 |
cerebral hemisphere | 9.51e-10 | 21 |
pallium | 9.51e-10 | 21 |
regional part of cerebral cortex | 3.83e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.