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Coexpression cluster:C60: Difference between revisions

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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0

Latest revision as of 10:21, 17 September 2013


Full id: C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical



Phase1 CAGE Peaks

Hg19::chr10:105495808..105495820,-p@chr10:105495808..105495820
-
Hg19::chr10:105495838..105495848,-p@chr10:105495838..105495848
-
Hg19::chr10:105495850..105495876,-p@chr10:105495850..105495876
-
Hg19::chr10:116275541..116275544,+p@chr10:116275541..116275544
+
Hg19::chr10:116392937..116392954,-p@chr10:116392937..116392954
-
Hg19::chr10:75413258..75413290,-p@chr10:75413258..75413290
-
Hg19::chr10:75423560..75423562,-p@chr10:75423560..75423562
-
Hg19::chr11:18548254..18548281,-p@chr11:18548254..18548281
-
Hg19::chr11:67786884..67786893,+p2@AK129943
Hg19::chr11:698049..698054,-p@chr11:698049..698054
-
Hg19::chr11:8795787..8795804,-p26@ST5
Hg19::chr12:106691707..106691726,+p@chr12:106691707..106691726
+
Hg19::chr12:123187512..123187523,-p2@HCAR2
Hg19::chr12:31397380..31397386,+p@chr12:31397380..31397386
+
Hg19::chr12:48119266..48119279,-p1@ENDOU
Hg19::chr12:53200456..53200478,+p2@CU692075
Hg19::chr12:53200490..53200511,+p3@CU692075
Hg19::chr12:53200523..53200541,-p@chr12:53200523..53200541
-
Hg19::chr12:53200600..53200613,-p@chr12:53200600..53200613
-
Hg19::chr12:53200658..53200668,-p@chr12:53200658..53200668
-
Hg19::chr12:53200675..53200684,-p@chr12:53200675..53200684
-
Hg19::chr12:53200712..53200723,-p@chr12:53200712..53200723
-
Hg19::chr12:53200731..53200762,-p@chr12:53200731..53200762
-
Hg19::chr12:53200787..53200801,-p@chr12:53200787..53200801
-
Hg19::chr12:53200837..53200852,-p@chr12:53200837..53200852
-
Hg19::chr12:53200913..53200924,-p@chr12:53200913..53200924
-
Hg19::chr12:53200931..53200932,-p@chr12:53200931..53200932
-
Hg19::chr12:53200945..53200976,-p@chr12:53200945..53200976
-
Hg19::chr12:53200984..53200997,-p@chr12:53200984..53200997
-
Hg19::chr12:53201166..53201188,-p@chr12:53201166..53201188
-
Hg19::chr12:53201485..53201493,-p15@KRT4
Hg19::chr12:53201498..53201514,-p5@KRT4
Hg19::chr12:53201516..53201527,-p8@KRT4
Hg19::chr12:53201551..53201566,+p@chr12:53201551..53201566
+
Hg19::chr12:53201553..53201562,-p11@KRT4
Hg19::chr12:53201566..53201575,-p13@KRT4
Hg19::chr12:53201596..53201607,-p7@KRT4
Hg19::chr12:53201621..53201631,-p14@KRT4
Hg19::chr12:53201644..53201647,-p18@KRT4
Hg19::chr12:53202108..53202119,+p@chr12:53202108..53202119
+
Hg19::chr12:53202541..53202544,-p@chr12:53202541..53202544
-
Hg19::chr12:53203208..53203216,-p@chr12:53203208..53203216
-
Hg19::chr12:53203220..53203235,-p@chr12:53203220..53203235
-
Hg19::chr12:53203254..53203265,-p@chr12:53203254..53203265
-
Hg19::chr12:53204539..53204571,+p@chr12:53204539..53204571
+
Hg19::chr12:53205597..53205606,-p9@KRT4
Hg19::chr12:53205625..53205638,-p6@KRT4
Hg19::chr12:53205652..53205684,-p2@KRT4
Hg19::chr12:53205697..53205705,-p10@KRT4
Hg19::chr12:53205714..53205729,-p3@KRT4
Hg19::chr12:53207890..53207907,-p1@KRT4
Hg19::chr12:53232854..53232870,-p@chr12:53232854..53232870
-
Hg19::chr12:53242592..53242631,-p4@KRT78
Hg19::chr12:53242770..53242783,-p1@KRT78
Hg19::chr12:53673418..53673427,+p9@ESPL1
Hg19::chr12:8995874..8995875,+p26@A2ML1
Hg19::chr12:9008112..9008120,+p25@A2ML1
Hg19::chr12:9010623..9010637,+p@chr12:9010623..9010637
+
Hg19::chr12:970331..970378,+p@chr12:970331..970378
+
Hg19::chr13:78146259..78146282,+p@chr13:78146259..78146282
+
Hg19::chr14:104571241..104571260,+p2@ASPG
Hg19::chr14:104571289..104571302,+p4@ASPG
Hg19::chr14:80697396..80697402,-p25@DIO2
Hg19::chr15:90030177..90030186,-p@chr15:90030177..90030186
-
Hg19::chr15:90030191..90030200,-p@chr15:90030191..90030200
-
Hg19::chr15:90039805..90039821,-p1@RHCG
Hg19::chr15:90744026..90744037,+p@chr15:90744026..90744037
+
Hg19::chr16:2764156..2764203,-p@chr16:2764156..2764203
-
Hg19::chr16:2770218..2770233,-p1@PRSS27
Hg19::chr16:70602928..70602938,+p@chr16:70602928..70602938
+
Hg19::chr17:39657263..39657336,-p@chr17:39657263..39657336
-
Hg19::chr17:39657351..39657375,-p@chr17:39657351..39657375
-
Hg19::chr17:39657377..39657402,-p@chr17:39657377..39657402
-
Hg19::chr17:39657420..39657432,-p@chr17:39657420..39657432
-
Hg19::chr17:39657472..39657506,-p@chr17:39657472..39657506
-
Hg19::chr17:39657509..39657542,-p@chr17:39657509..39657542
-
Hg19::chr17:39657536..39657564,+p1@ENST00000411759
Hg19::chr17:39657548..39657549,-p@chr17:39657548..39657549
-
Hg19::chr17:39657551..39657567,-p@chr17:39657551..39657567
-
Hg19::chr17:39657569..39657633,-p@chr17:39657569..39657633
-
Hg19::chr17:39657991..39658003,-p@chr17:39657991..39658003
-
Hg19::chr17:39658661..39658672,-p11@KRT13
Hg19::chr17:39658702..39658710,-p@chr17:39658702..39658710
-
Hg19::chr17:39658723..39658735,-p@chr17:39658723..39658735
-
Hg19::chr17:39658749..39658760,-p@chr17:39658749..39658760
-
Hg19::chr17:39658766..39658788,-p@chr17:39658766..39658788
-
Hg19::chr17:39658800..39658850,-p@chr17:39658800..39658850
-
Hg19::chr17:39658980..39659009,-p6@KRT13
Hg19::chr17:39658981..39659006,+p@chr17:39658981..39659006
+
Hg19::chr17:39659014..39659027,-p14@KRT13
Hg19::chr17:39659035..39659056,-p5@KRT13
Hg19::chr17:39659217..39659230,+p@chr17:39659217..39659230
+
Hg19::chr17:39659222..39659229,-p17@KRT13
Hg19::chr17:39659243..39659248,+p@chr17:39659243..39659248
+
Hg19::chr17:39659244..39659257,-p13@KRT13
Hg19::chr17:39659278..39659313,-p4@KRT13
Hg19::chr17:39659308..39659326,+p@chr17:39659308..39659326
+
Hg19::chr17:39659317..39659328,-p8@KRT13
Hg19::chr17:39659331..39659336,-p20@KRT13
Hg19::chr17:39659343..39659346,-p21@KRT13
Hg19::chr17:39659525..39659561,+p@chr17:39659525..39659561
+
Hg19::chr17:39659613..39659636,-p1@BC113044
Hg19::chr17:39659639..39659661,-p2@BC113044
Hg19::chr17:39659676..39659686,-p3@BC113044
Hg19::chr17:39659950..39659962,-p@chr17:39659950..39659962
-
Hg19::chr17:39659966..39659969,-p@chr17:39659966..39659969
-
Hg19::chr17:39659970..39659987,-p@chr17:39659970..39659987
-
Hg19::chr17:39660121..39660123,-p@chr17:39660121..39660123
-
Hg19::chr17:39661305..39661336,+p@chr17:39661305..39661336
+
Hg19::chr17:39661344..39661349,+p@chr17:39661344..39661349
+
Hg19::chr17:39661355..39661374,+p@chr17:39661355..39661374
+
Hg19::chr17:39661426..39661441,+p@chr17:39661426..39661441
+
Hg19::chr17:39661463..39661479,+p@chr17:39661463..39661479
+
Hg19::chr17:39661541..39661564,+p@chr17:39661541..39661564
+
Hg19::chr17:39661856..39661871,-p1@KRT13
Hg19::chr17:39662000..39662010,-p16@KRT13
Hg19::chr17:39667678..39667684,+p@chr17:39667678..39667684
+
Hg19::chr18:28682080..28682106,-p3@DSC2
Hg19::chr18:29006845..29006854,-p@chr18:29006845..29006854
-
Hg19::chr18:29006862..29006869,-p@chr18:29006862..29006869
-
Hg19::chr18:29006875..29006888,-p@chr18:29006875..29006888
-
Hg19::chr18:29006892..29006902,-p@chr18:29006892..29006902
-
Hg19::chr18:43744952..43744955,+p@chr18:43744952..43744955
+
Hg19::chr18:52051834..52051848,+p@chr18:52051834..52051848
+
Hg19::chr18:52259392..52259401,+p@chr18:52259392..52259401
+
Hg19::chr18:52259406..52259421,+p@chr18:52259406..52259421
+
Hg19::chr19:15343153..15343164,-p7@EPHX3
Hg19::chr19:42893148..42893167,-p@chr19:42893148..42893167
-
Hg19::chr19:42894136..42894138,-p@chr19:42894136..42894138
-
Hg19::chr19:42894442..42894451,-p1@CNFN
Hg19::chr19:51538150..51538203,-p1@KLK12
Hg19::chr19:51538247..51538275,-p2@KLK12
Hg19::chr19:51563263..51563273,+p@chr19:51563263..51563273
+
Hg19::chr19:51563274..51563287,-p@chr19:51563274..51563287
-
Hg19::chr19:51568337..51568363,-p1@KLK13
Hg19::chr19:51568929..51568943,-p@chr19:51568929..51568943
-
Hg19::chr19:51845411..51845412,-p10@VSIG10L
Hg19::chr19:55587751..55587772,+p3@EPS8L1
Hg19::chr19:58907015..58907033,+p1@LOC646862
Hg19::chr1:116666751..116666755,+p@chr1:116666751..116666755
+
Hg19::chr1:118570948..118570964,-p@chr1:118570948..118570964
-
Hg19::chr1:118570971..118570976,-p@chr1:118570971..118570976
-
Hg19::chr1:150482616..150482631,+p@chr1:150482616..150482631
+
Hg19::chr1:152382640..152382645,+p@chr1:152382640..152382645
+
Hg19::chr1:152382654..152382683,+p@chr1:152382654..152382683
+
Hg19::chr1:152382675..152382686,-p@chr1:152382675..152382686
-
Hg19::chr1:152382699..152382707,-p@chr1:152382699..152382707
-
Hg19::chr1:152382751..152382765,+p@chr1:152382751..152382765
+
Hg19::chr1:152382766..152382801,+p@chr1:152382766..152382801
+
Hg19::chr1:152382773..152382786,-p@chr1:152382773..152382786
-
Hg19::chr1:152382802..152382810,-p@chr1:152382802..152382810
-
Hg19::chr1:152382819..152382833,-p@chr1:152382819..152382833
-
Hg19::chr1:152382880..152382889,-p@chr1:152382880..152382889
-
Hg19::chr1:152382896..152382914,+p@chr1:152382896..152382914
+
Hg19::chr1:152382906..152382915,-p@chr1:152382906..152382915
-
Hg19::chr1:152382918..152382945,+p@chr1:152382918..152382945
+
Hg19::chr1:152382929..152382940,-p@chr1:152382929..152382940
-
Hg19::chr1:152382953..152382966,-p@chr1:152382953..152382966
-
Hg19::chr1:152382982..152382997,-p@chr1:152382982..152382997
-
Hg19::chr1:152383005..152383010,-p@chr1:152383005..152383010
-
Hg19::chr1:152383022..152383031,-p@chr1:152383022..152383031
-
Hg19::chr1:152383048..152383058,-p@chr1:152383048..152383058
-
Hg19::chr1:152383063..152383073,-p@chr1:152383063..152383073
-
Hg19::chr1:152383078..152383092,-p@chr1:152383078..152383092
-
Hg19::chr1:152383096..152383106,-p@chr1:152383096..152383106
-
Hg19::chr1:152383121..152383144,+p@chr1:152383121..152383144
+
Hg19::chr1:152383149..152383161,-p@chr1:152383149..152383161
-
Hg19::chr1:152383167..152383181,-p@chr1:152383167..152383181
-
Hg19::chr1:152383211..152383220,-p@chr1:152383211..152383220
-
Hg19::chr1:152383226..152383237,-p@chr1:152383226..152383237
-
Hg19::chr1:152384638..152384647,-p1@CU689016
Hg19::chr1:152384720..152384731,-p3@CU689016
Hg19::chr1:152386732..152386745,-p1@CRNN
Hg19::chr1:152386747..152386752,-p2@CRNN
Hg19::chr1:152486950..152486964,+p1@CRCT1
Hg19::chr1:152487957..152487969,+p3@CRCT1
Hg19::chr1:152957724..152957751,+p2@SPRR1A
Hg19::chr1:152957764..152957775,+p3@SPRR1A
Hg19::chr1:152974218..152974231,+p1@SPRR3
Hg19::chr1:152975474..152975485,+p2@SPRR3
Hg19::chr1:152975488..152975498,+p4@SPRR3
Hg19::chr1:152975503..152975534,+p1@AB587575
Hg19::chr1:152975514..152975535,-p@chr1:152975514..152975535
-
Hg19::chr1:152975538..152975551,-p@chr1:152975538..152975551
-
Hg19::chr1:152975544..152975565,+p2@AB587575
Hg19::chr1:152975555..152975563,-p@chr1:152975555..152975563
-
Hg19::chr1:152975569..152975582,-p@chr1:152975569..152975582
-
Hg19::chr1:152975585..152975590,+p12@AB587575
Hg19::chr1:152975590..152975603,-p@chr1:152975590..152975603
-
Hg19::chr1:152975595..152975603,+p8@AB587575
Hg19::chr1:152975604..152975615,-p@chr1:152975604..152975615
-
Hg19::chr1:152975608..152975618,+p7@AB587575
Hg19::chr1:152975620..152975629,+p13@AB587575
Hg19::chr1:152975785..152975794,+p14@AB587575
Hg19::chr1:152975795..152975798,+p22@AB587575
Hg19::chr1:152975802..152975809,+p15@AB587575
Hg19::chr1:152975812..152975817,+p19@AB587575
Hg19::chr1:152975830..152975844,+p4@AB587575
Hg19::chr1:152975850..152975863,+p10@AB587575
Hg19::chr1:152975869..152975876,+p20@AB587575
Hg19::chr1:152975877..152975880,+p21@AB587575
Hg19::chr1:152975882..152975894,+p6@AB587575
Hg19::chr1:152975907..152975917,+p9@AB587575
Hg19::chr1:152975931..152975938,+p16@AB587575
Hg19::chr1:152975940..152975958,+p5@AB587575
Hg19::chr1:152975963..152975973,+p11@AB587575
Hg19::chr1:152975970..152975992,-p@chr1:152975970..152975992
-
Hg19::chr1:152975982..152975994,+p3@AB587575
Hg19::chr1:152975995..152976022,-p@chr1:152975995..152976022
-
Hg19::chr1:152976011..152976017,+p@chr1:152976011..152976017
+
Hg19::chr1:152976023..152976067,+p@chr1:152976023..152976067
+
Hg19::chr1:152976024..152976042,-p@chr1:152976024..152976042
-
Hg19::chr1:152976078..152976087,+p@chr1:152976078..152976087
+
Hg19::chr1:152976098..152976136,+p@chr1:152976098..152976136
+
Hg19::chr1:152976108..152976135,-p@chr1:152976108..152976135
-
Hg19::chr1:152976174..152976177,-p@chr1:152976174..152976177
-
Hg19::chr1:152976196..152976209,-p@chr1:152976196..152976209
-
Hg19::chr1:152976212..152976222,+p@chr1:152976212..152976222
+
Hg19::chr1:152976237..152976250,+p@chr1:152976237..152976250
+
Hg19::chr1:153333355..153333369,+p@chr1:153333355..153333369
+
Hg19::chr1:154141847..154141857,-p@chr1:154141847..154141857
-
Hg19::chr1:55266926..55266958,-p2@TTC22
Hg19::chr1:55272540..55272552,+p@chr1:55272540..55272552
+
Hg19::chr1:82165287..82165302,+p12@LPHN2
Hg19::chr1:87012691..87012711,+p6@CLCA4
Hg19::chr1:87012753..87012767,+p1@CLCA4
Hg19::chr1:89829517..89829537,+p3@GBP6
Hg19::chr1:89829610..89829627,+p1@GBP6
Hg19::chr1:9937997..9938010,-p@chr1:9937997..9938010
-
Hg19::chr1:9938028..9938048,-p@chr1:9938028..9938048
-
Hg19::chr20:2276639..2276656,+p1@TGM3
Hg19::chr20:46821059..46821069,+p@chr20:46821059..46821069
+
Hg19::chr22:46771050..46771059,-p@chr22:46771050..46771059
-
Hg19::chr2:113763031..113763038,+p1@IL36A
Hg19::chr2:113875512..113875560,+p2@IL1RN
Hg19::chr2:178179611..178179619,-p4@ENST00000443132
Hg19::chr2:178179636..178179647,-p3@ENST00000443132
Hg19::chr2:234590530..234590553,+p1@UGT1A7
Hg19::chr2:234590556..234590568,+p2@UGT1A7
Hg19::chr2:241835561..241835575,-p1@C2orf54
Hg19::chr2:26350051..26350063,+p@chr2:26350051..26350063
+
Hg19::chr2:31440377..31440385,-p1@CAPN14
Hg19::chr2:31472137..31472163,+p@chr2:31472137..31472163
+
Hg19::chr2:95691445..95691461,+p1@MAL
Hg19::chr2:95713709..95713720,+p@chr2:95713709..95713720
+
Hg19::chr2:95719121..95719138,+p@chr2:95719121..95719138
+
Hg19::chr2:95719226..95719249,+p@chr2:95719226..95719249
+
Hg19::chr2:95719400..95719411,+p@chr2:95719400..95719411
+
Hg19::chr2:97711854..97711859,+p1@ENST00000450846
Hg19::chr3:124535316..124535340,+p@chr3:124535316..124535340
+
Hg19::chr3:159756844..159756848,-p@chr3:159756844..159756848
-
Hg19::chr3:195542563..195542578,+p@chr3:195542563..195542578
+
Hg19::chr3:197273574..197273608,-p1@AB528556
Hg19::chr3:259245..259270,+p19@CHL1
Hg19::chr4:100356431..100356446,-p3@ADH7
Hg19::chr4:100356453..100356521,-p1@ADH7
Hg19::chr4:100356522..100356531,-p5@ADH7
Hg19::chr4:100356551..100356570,-p2@ADH7
Hg19::chr4:68829159..68829224,-p1@TMPRSS11A
Hg19::chr4:68829226..68829237,-p3@TMPRSS11A
Hg19::chr4:68829248..68829263,-p2@TMPRSS11A
Hg19::chr4:69083720..69083737,-p1@ENST00000504453
p1@ENST00000511720
Hg19::chr4:69111401..69111418,-p1@TMPRSS11B
Hg19::chr4:69313171..69313194,+p1@TMPRSS11E
Hg19::chr5:134375398..134375414,-p2@ENST00000511256
Hg19::chr5:134375415..134375475,-p1@ENST00000511256
Hg19::chr5:147443534..147443551,+p1@SPINK5
Hg19::chr5:147466003..147466018,+p7@SPINK5
Hg19::chr5:147491402..147491420,+p@chr5:147491402..147491420
+
Hg19::chr5:147691979..147691997,+p1@SPINK7
Hg19::chr6:106808702..106808727,+p8@AIM1
Hg19::chr6:150219214..150219224,-p8@RAET1E
Hg19::chr6:150219232..150219254,-p2@RAET1E
Hg19::chr6:168096959..168096975,-p1@uc003qvy.1
Hg19::chr6:30043497..30043501,-p4@RNF39
Hg19::chr6:30951487..30951504,+p1@MUC21
Hg19::chr6:30954084..30954093,-p@chr6:30954084..30954093
-
Hg19::chr6:30954100..30954103,+p10@MUC21
Hg19::chr6:30954115..30954126,+p2@MUC21
Hg19::chr6:30954142..30954150,+p5@MUC21
Hg19::chr6:30954161..30954172,+p3@MUC21
Hg19::chr6:30954191..30954198,-p@chr6:30954191..30954198
-
Hg19::chr6:31600594..31600600,+p@chr6:31600594..31600600
+
Hg19::chr6:6799463..6799475,-p@chr6:6799463..6799475
-
Hg19::chr8:143823816..143823832,-p1@SLURP1
Hg19::chr8:143851234..143851252,-p2@LYNX1
Hg19::chr8:82500266..82500269,-p@chr8:82500266..82500269
-
Hg19::chr9:140119618..140119635,+p1@C9orf169
Hg19::chr9:75728805..75728845,-p@chr9:75728805..75728845
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0009913epidermal cell differentiation1.41601329514011e-06
GO:0048730epidermis morphogenesis1.41601329514011e-06
GO:0008544epidermis development2.01466657094069e-06
GO:0007398ectoderm development2.24411353887132e-06
GO:0048729tissue morphogenesis2.24411353887132e-06
GO:0031424keratinization9.32934460505389e-06
GO:0009888tissue development0.000105226369967371
GO:0001533cornified envelope0.000132292126116635
GO:0004252serine-type endopeptidase activity0.000135798780670284
GO:0008236serine-type peptidase activity0.000226209905842224
GO:0017171serine hydrolase activity0.000226209905842224
GO:0030216keratinocyte differentiation0.000230958516534402
GO:0030855epithelial cell differentiation0.000373043094348776
GO:0009653anatomical structure morphogenesis0.000937413685950115
GO:0048869cellular developmental process0.00112863934472534
GO:0030154cell differentiation0.00112863934472534
GO:0004175endopeptidase activity0.00112863934472534
GO:0002009morphogenesis of an epithelium0.00146492407546216
GO:0008233peptidase activity0.0022254787697735
GO:0048856anatomical structure development0.0022254787697735
GO:0006508proteolysis0.00302994733737321
GO:0045177apical part of cell0.00302994733737321
GO:0022404molting cycle process0.0034046175432698
GO:0001942hair follicle development0.0034046175432698
GO:0022405hair cycle process0.0034046175432698
GO:0042633hair cycle0.0034046175432698
GO:0042303molting cycle0.0034046175432698
GO:0048513organ development0.00598753539904433
GO:0018149peptide cross-linking0.00669221120975619
GO:0048731system development0.00823891727396339
GO:0031234extrinsic to internal side of plasma membrane0.0166626785626113
GO:0005856cytoskeleton0.0187500937750301
GO:0032502developmental process0.0208804400870822
GO:0051665lipid raft localization0.0251823866931777
GO:0031580lipid raft distribution0.0251823866931777
GO:0001766lipid raft polarization0.0251823866931777
GO:0045842positive regulation of mitotic metaphase/anaphase transition0.0251823866931777
GO:0043163cell envelope organization and biogenesis0.0251823866931777
GO:0045875negative regulation of sister chromatid cohesion0.0251823866931777
GO:0042599lamellar body0.0251823866931777
GO:0007063regulation of sister chromatid cohesion0.0251823866931777
GO:0005882intermediate filament0.0289068344479616
GO:0045111intermediate filament cytoskeleton0.0289068344479616
GO:0016324apical plasma membrane0.0299409303102591
GO:0004866endopeptidase inhibitor activity0.0303491206904742
GO:0051293establishment of spindle localization0.0303491206904742
GO:0035315hair cell differentiation0.0303491206904742
GO:0008519ammonium transmembrane transporter activity0.0303491206904742
GO:0051653spindle localization0.0303491206904742
GO:0015696ammonium transport0.0303491206904742
GO:0040001establishment of mitotic spindle localization0.0303491206904742
GO:0030414protease inhibitor activity0.0334317251185693
GO:0004024alcohol dehydrogenase activity, zinc-dependent0.0381949191725499
GO:0031579lipid raft organization and biogenesis0.0381949191725499
GO:0007275multicellular organismal development0.0429439998574265
GO:0042640anagen0.0429439998574265
GO:0006067ethanol metabolic process0.0429439998574265
GO:0006069ethanol oxidation0.0429439998574265
GO:0019003GDP binding0.0429439998574265
GO:0004800thyroxine 5'-deiodinase activity0.0429439998574265
GO:0030353fibroblast growth factor receptor antagonist activity0.0461216256646744
GO:0005152interleukin-1 receptor antagonist activity0.0461216256646744
GO:00040283-chloroallyl aldehyde dehydrogenase activity0.0461216256646744
GO:0006451translational readthrough0.0461216256646744
GO:0001514selenocysteine incorporation0.0461216256646744
GO:0030506ankyrin binding0.0461216256646744
GO:0009898internal side of plasma membrane0.0461216256646744



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
tongue1.98e-303
gustatory system1.98e-303
future tongue1.98e-303
tonsil2.62e-231
mucosa-associated lymphoid tissue2.62e-231
lymphoid tissue2.62e-231
tonsillar ring2.62e-231
chordate pharynx1.47e-2010
pharyngeal region of foregut1.47e-2010
pharynx9.20e-1911
uterine cervix1.76e-156
neck of organ1.76e-156
throat1.65e-122
open tracheal system trachea3.24e-122
upper respiratory tract3.67e-1119
oral opening9.98e-1022
embryonic uterus1.34e-0922
esophagus8.31e-093
esophageal region8.31e-093
segment of respiratory tract6.76e-0847
mouth1.59e-0729
stomodeum1.59e-0729
adult organism5.84e-07114
respiratory tract6.51e-0754


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.0238029
MA0006.10.0259482
MA0007.10.0493166
MA0009.10.305743
MA0014.11.99457e-10
MA0017.10.0747859
MA0019.10.979117
MA0024.10.0700491
MA0025.11.26446
MA0027.10.996524
MA0028.10.00252223
MA0029.10.453364
MA0030.10.0297556
MA0031.10.0135351
MA0038.10.0106419
MA0040.10.010218
MA0041.10.211004
MA0042.10.0870869
MA0043.10.493687
MA0046.10.0218173
MA0048.10.0174899
MA0050.10.00895706
MA0051.10.00111404
MA0052.10.481293
MA0055.14.25871
MA0056.10
MA0057.14.29434e-05
MA0058.10.00702986
MA0059.10.302168
MA0060.16.67188e-05
MA0061.10.000574899
MA0063.10
MA0066.12.64502
MA0067.10.19765
MA0068.10.00391198
MA0069.13.31318
MA0070.10.059971
MA0071.11.36233
MA0072.10.41465
MA0073.10
MA0074.10.832661
MA0076.10.000145938
MA0077.10.0537184
MA0078.11.1015
MA0081.10.087376
MA0083.10.320001
MA0084.10.125207
MA0087.10.0563586
MA0088.11.037e-08
MA0089.10
MA0090.10.160106
MA0091.11.58003
MA0092.14.98034
MA0093.10.0103784
MA0095.10
MA0098.10
MA0100.11.40208
MA0101.10.000324099
MA0103.15.08378
MA0105.18.9164e-07
MA0106.11.94243
MA0107.10.000851843
MA0108.20.768673
MA0109.10
MA0111.10.450524
MA0113.10.105893
MA0114.10.422637
MA0115.10.320485
MA0116.10.688195
MA0117.10.598486
MA0119.10.29972
MA0122.11.68746
MA0124.10.264417
MA0125.10.0634691
MA0130.10
MA0131.10.00350521
MA0132.10
MA0133.10
MA0135.10.0322034
MA0136.10.318674
MA0139.11.86264e-06
MA0140.10.0429948
MA0141.11.29779
MA0142.10.202321
MA0143.10.172973
MA0144.10.0101367
MA0145.10.410829
MA0146.10.0254103
MA0147.10.00431181
MA0148.10.00451681
MA0149.10.00115029
MA0062.23.81895e-06
MA0035.20.00146171
MA0039.21.18987e-11
MA0138.20.887189
MA0002.21.56066
MA0137.20.0319776
MA0104.20.000283822
MA0047.20.0726461
MA0112.21.33572
MA0065.21.20251
MA0150.10.199165
MA0151.10
MA0152.10.00176391
MA0153.10.305905
MA0154.10.197865
MA0155.11.44374e-06
MA0156.10.416266
MA0157.10.0430706
MA0158.10
MA0159.11.7162
MA0160.10.278826
MA0161.10
MA0162.10
MA0163.10
MA0164.11.1574
MA0080.20.0440458
MA0018.20.000829628
MA0099.20.281388
MA0079.20
MA0102.20.143408
MA0258.11.9032
MA0259.10.0396484
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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