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Coexpression cluster:C61: Difference between revisions

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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0,0,

Latest revision as of 10:21, 17 September 2013


Full id: C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b



Phase1 CAGE Peaks

Hg19::chr10:103774322..103774339,-p@chr10:103774322..103774339
-
Hg19::chr10:112109413..112109419,-p@chr10:112109413..112109419
-
Hg19::chr10:22556107..22556110,+p1@ENST00000419532
Hg19::chr10:29822094..29822110,-p@chr10:29822094..29822110
-
Hg19::chr10:29822118..29822130,-p@chr10:29822118..29822130
-
Hg19::chr10:61810292..61810302,+p@chr10:61810292..61810302
+
Hg19::chr10:61810305..61810318,+p@chr10:61810305..61810318
+
Hg19::chr10:61810336..61810349,+p@chr10:61810336..61810349
+
Hg19::chr10:76194470..76194496,+p@chr10:76194470..76194496
+
Hg19::chr11:102188272..102188281,+p4@BIRC3
Hg19::chr11:107498447..107498449,+p@chr11:107498447..107498449
+
Hg19::chr11:60712008..60712039,-p@chr11:60712008..60712039
-
Hg19::chr11:60859819..60859836,-p@chr11:60859819..60859836
-
Hg19::chr11:60859886..60859898,-p@chr11:60859886..60859898
-
Hg19::chr11:64365227..64365232,+p@chr11:64365227..64365232
+
Hg19::chr11:64497276..64497282,-p@chr11:64497276..64497282
-
Hg19::chr11:64784128..64784143,+p@chr11:64784128..64784143
+
Hg19::chr11:915207..915220,-p5@CHID1
Hg19::chr11:915274..915282,-p12@CHID1
Hg19::chr11:9225193..9225210,-p@chr11:9225193..9225210
-
Hg19::chr11:9225216..9225230,-p@chr11:9225216..9225230
-
Hg19::chr12:108599751..108599756,+p@chr12:108599751..108599756
+
Hg19::chr12:112513512..112513567,-p@chr12:112513512..112513567
-
Hg19::chr12:112513578..112513587,-p@chr12:112513578..112513587
-
Hg19::chr12:112563335..112563371,+p1@TRAFD1
Hg19::chr12:121951651..121951663,-p@chr12:121951651..121951663
-
Hg19::chr12:121972489..121972509,-p14@KDM2B
Hg19::chr12:121972519..121972545,-p10@KDM2B
Hg19::chr12:121972556..121972571,-p3@KDM2B
Hg19::chr12:131438753..131438771,+p4@GPR133
Hg19::chr12:131543197..131543202,+p@chr12:131543197..131543202
+
Hg19::chr12:56552452..56552476,+p3@MYL6
Hg19::chr12:95211893..95211903,-p@chr12:95211893..95211903
-
Hg19::chr12:95211919..95211930,-p@chr12:95211919..95211930
-
Hg19::chr12:95211935..95211951,-p@chr12:95211935..95211951
-
Hg19::chr12:95258087..95258088,-p@chr12:95258087..95258088
-
Hg19::chr12:95267426..95267478,-p@chr12:95267426..95267478
-
Hg19::chr12:95267640..95267650,-p@chr12:95267640..95267650
-
Hg19::chr13:32672504..32672512,-p@chr13:32672504..32672512
-
Hg19::chr13:46742630..46742701,-p3@LCP1
Hg19::chr13:51381967..51381988,+p3@uc001vey.2
Hg19::chr13:51381989..51382005,+p1@DLEU7-AS1
Hg19::chr13:51382017..51382022,+p3@DLEU7-AS1
Hg19::chr13:51382041..51382048,+p2@DLEU7-AS1
Hg19::chr13:75884283..75884317,-p@chr13:75884283..75884317
-
Hg19::chr13:75884320..75884362,-p@chr13:75884320..75884362
-
Hg19::chr14:23707139..23707159,+p@chr14:23707139..23707159
+
Hg19::chr14:50459798..50459819,-p1@C14orf182
Hg19::chr14:65641128..65641129,-p@chr14:65641128..65641129
-
Hg19::chr14:69199933..69199953,-p@chr14:69199933..69199953
-
Hg19::chr14:69199959..69199970,-p@chr14:69199959..69199970
-
Hg19::chr15:101534994..101535003,+p@chr15:101534994..101535003
+
Hg19::chr15:101535004..101535045,+p@chr15:101535004..101535045
+
Hg19::chr15:44954800..44954825,-p@chr15:44954800..44954825
-
Hg19::chr16:10850527..10850548,+p@chr16:10850527..10850548
+
Hg19::chr16:10868999..10869019,-p5@FAM18A
Hg19::chr16:10869031..10869038,-p12@FAM18A
Hg19::chr16:10870586..10870591,-p@chr16:10870586..10870591
-
Hg19::chr16:10885979..10885991,+p@chr16:10885979..10885991
+
Hg19::chr16:10959804..10959811,+p5@AB463580
Hg19::chr16:10959868..10959879,+p2@AB463580
Hg19::chr16:10959880..10959887,+p6@AB463580
Hg19::chr16:10960091..10960099,+p3@AB463580
Hg19::chr16:10960104..10960115,+p4@AB463580
Hg19::chr16:10989793..10989814,+p@chr16:10989793..10989814
+
Hg19::chr16:14511039..14511043,+p@chr16:14511039..14511043
+
Hg19::chr16:57392687..57392702,+p1@CCL22
Hg19::chr16:57394343..57394366,+p@chr16:57394343..57394366
+
Hg19::chr16:57394384..57394402,+p@chr16:57394384..57394402
+
Hg19::chr16:57394413..57394431,+p@chr16:57394413..57394431
+
Hg19::chr16:57394436..57394449,+p@chr16:57394436..57394449
+
Hg19::chr16:57397411..57397421,+p@chr16:57397411..57397421
+
Hg19::chr16:57397427..57397438,+p@chr16:57397427..57397438
+
Hg19::chr16:57397464..57397474,+p@chr16:57397464..57397474
+
Hg19::chr16:57397519..57397530,+p@chr16:57397519..57397530
+
Hg19::chr16:57397539..57397560,+p@chr16:57397539..57397560
+
Hg19::chr16:57397561..57397572,+p@chr16:57397561..57397572
+
Hg19::chr16:57397581..57397590,+p@chr16:57397581..57397590
+
Hg19::chr16:57397593..57397602,+p@chr16:57397593..57397602
+
Hg19::chr16:57397629..57397640,+p@chr16:57397629..57397640
+
Hg19::chr16:57397653..57397690,+p@chr16:57397653..57397690
+
Hg19::chr16:57397875..57397886,+p@chr16:57397875..57397886
+
Hg19::chr16:57397882..57397931,-p1@CU693343
Hg19::chr16:57397927..57397934,+p@chr16:57397927..57397934
+
Hg19::chr16:57398105..57398126,+p@chr16:57398105..57398126
+
Hg19::chr16:57398263..57398266,+p@chr16:57398263..57398266
+
Hg19::chr16:57398271..57398274,+p@chr16:57398271..57398274
+
Hg19::chr16:57398283..57398306,+p@chr16:57398283..57398306
+
Hg19::chr16:57398441..57398460,+p@chr16:57398441..57398460
+
Hg19::chr16:57399642..57399651,+p@chr16:57399642..57399651
+
Hg19::chr17:1675324..1675347,+p@chr17:1675324..1675347
+
Hg19::chr17:19976626..19976659,+p14@SPECC1
Hg19::chr17:42422929..42422956,+p@chr17:42422929..42422956
+
Hg19::chr17:42422973..42422983,+p@chr17:42422973..42422983
+
Hg19::chr17:42423007..42423019,+p@chr17:42423007..42423019
+
Hg19::chr17:43096311..43096313,+p@chr17:43096311..43096313
+
Hg19::chr17:43299013..43299038,-p3@ENST00000498986
p3@uc002iil.3
Hg19::chr17:43394372..43394435,-p1@MAP3K14
Hg19::chr17:43442243..43442253,-p@chr17:43442243..43442253
-
Hg19::chr17:4643317..4643359,-p15@CXCL16
Hg19::chr17:4689649..4689671,-p1@VMO1
Hg19::chr17:4689735..4689745,-p2@VMO1
Hg19::chr17:4736789..4736810,+p2@MINK1
Hg19::chr17:4736812..4736826,+p4@MINK1
Hg19::chr17:58165660..58165685,-p1@uc002iyl.2
Hg19::chr17:58165691..58165709,-p4@uc002iyl.2
Hg19::chr17:58165717..58165743,-p2@uc002iyl.2
Hg19::chr17:58165788..58165794,-p1@LOC645638
Hg19::chr17:66218994..66219005,+p@chr17:66218994..66219005
+
Hg19::chr17:76133866..76133872,+p23@TMC8
Hg19::chr17:76167616..76167647,+p@chr17:76167616..76167647
+
Hg19::chr17:7791111..7791123,+p@chr17:7791111..7791123
+
Hg19::chr17:7792791..7792802,+p@chr17:7792791..7792802
+
Hg19::chr17:7792820..7792832,+p@chr17:7792820..7792832
+
Hg19::chr18:56247066..56247080,-p23@ALPK2
Hg19::chr18:56247086..56247111,-p24@ALPK2
Hg19::chr18:56320715..56320732,+p@chr18:56320715..56320732
+
Hg19::chr18:56338677..56338687,+p5@MALT1
Hg19::chr19:39687556..39687587,+p2@NCCRP1
Hg19::chr19:39687596..39687612,+p1@NCCRP1
Hg19::chr19:39687865..39687877,+p3@NCCRP1
Hg19::chr19:39691473..39691483,+p@chr19:39691473..39691483
+
Hg19::chr19:39691967..39691971,+p@chr19:39691967..39691971
+
Hg19::chr19:45231520..45231530,-p@chr19:45231520..45231530
-
Hg19::chr19:45231533..45231550,-p@chr19:45231533..45231550
-
Hg19::chr19:45487536..45487571,+p@chr19:45487536..45487571
+
Hg19::chr19:45487573..45487606,+p@chr19:45487573..45487606
+
Hg19::chr19:45487650..45487661,+p@chr19:45487650..45487661
+
Hg19::chr19:45494072..45494085,+p@chr19:45494072..45494085
+
Hg19::chr19:45494089..45494105,+p@chr19:45494089..45494105
+
Hg19::chr1:101610610..101610659,-p@chr1:101610610..101610659
-
Hg19::chr1:101701766..101701778,+p@chr1:101701766..101701778
+
Hg19::chr1:101701781..101701795,+p@chr1:101701781..101701795
+
Hg19::chr1:101701841..101701882,+p8@S1PR1
Hg19::chr1:10555561..10555572,+p@chr1:10555561..10555572
+
Hg19::chr1:10555579..10555591,+p@chr1:10555579..10555591
+
Hg19::chr1:112905828..112905838,+p1@ENST00000454560
Hg19::chr1:151318829..151318851,-p13@RFX5
Hg19::chr1:153650730..153650735,+p20@NPR1
Hg19::chr1:153650755..153650771,+p8@NPR1
Hg19::chr1:154926384..154926395,-p9@PBXIP1
Hg19::chr1:156123108..156123151,+p18@SEMA4A
Hg19::chr1:157105581..157105601,-p@chr1:157105581..157105601
-
Hg19::chr1:157108746..157108762,-p4@ETV3
Hg19::chr1:157108764..157108776,-p7@ETV3
Hg19::chr1:172750924..172750932,+p@chr1:172750924..172750932
+
Hg19::chr1:172751007..172751015,+p@chr1:172751007..172751015
+
Hg19::chr1:172751022..172751037,+p@chr1:172751022..172751037
+
Hg19::chr1:172751066..172751077,+p@chr1:172751066..172751077
+
Hg19::chr1:179921630..179921633,+p@chr1:179921630..179921633
+
Hg19::chr1:201368775..201368784,-p7@LAD1
Hg19::chr1:201369034..201369048,-p5@LAD1
Hg19::chr1:229761379..229761405,-p@chr1:229761379..229761405
-
Hg19::chr1:25194616..25194628,-p@chr1:25194616..25194628
-
Hg19::chr1:25197198..25197207,+p@chr1:25197198..25197207
+
Hg19::chr1:40846881..40846909,+p@chr1:40846881..40846909
+
Hg19::chr1:5433418..5433419,+p@chr1:5433418..5433419
+
Hg19::chr1:6342341..6342360,-p@chr1:6342341..6342360
-
Hg19::chr1:66779048..66779059,-p@chr1:66779048..66779059
-
Hg19::chr1:85462899..85462931,+p@chr1:85462899..85462931
+
Hg19::chr1:8935456..8935467,-p27@ENO1
Hg19::chr1:8935472..8935488,-p20@ENO1
Hg19::chr1:9163159..9163164,-p@chr1:9163159..9163164
-
Hg19::chr1:9189144..9189195,-p1@GPR157
Hg19::chr1:9189245..9189259,-p2@GPR157
Hg19::chr20:20406322..20406332,-p@chr20:20406322..20406332
-
Hg19::chr20:20406346..20406351,-p@chr20:20406346..20406351
-
Hg19::chr20:20418113..20418139,-p@chr20:20418113..20418139
-
Hg19::chr20:22897338..22897344,+p2@uc002wsp.2
Hg19::chr20:4768596..4768628,-p@chr20:4768596..4768628
-
Hg19::chr20:4803330..4803352,-p@chr20:4803330..4803352
-
Hg19::chr21:16090226..16090249,-p@chr21:16090226..16090249
-
Hg19::chr21:35894884..35894895,+p@chr21:35894884..35894895
+
Hg19::chr22:25815778..25815803,+p@chr22:25815778..25815803
+
Hg19::chr22:35807395..35807398,+p13@MCM5
Hg19::chr22:36616659..36616668,+p@chr22:36616659..36616668
+
Hg19::chr22:38609538..38609547,+p8@MAFF
Hg19::chr22:45705979..45705986,+p9@FAM118A
Hg19::chr22:45705987..45706022,+p2@FAM118A
Hg19::chr22:50986685..50986727,+p2@CU679553
Hg19::chr2:101179263..101179284,+p3@PDCL3
Hg19::chr2:101179291..101179310,+p5@PDCL3
Hg19::chr2:101179484..101179502,+p2@PDCL3
Hg19::chr2:102758335..102758346,+p30@IL1R1
Hg19::chr2:102758378..102758401,+p31@IL1R1
Hg19::chr2:158336391..158336415,+p@chr2:158336391..158336415
+
Hg19::chr2:158606314..158606346,-p@chr2:158606314..158606346
-
Hg19::chr2:160761179..160761275,-p1@LY75-CD302
p1@LY75
Hg19::chr2:206587174..206587196,+p17@NRP2
Hg19::chr2:208018487..208018495,-p@chr2:208018487..208018495
-
Hg19::chr2:216986721..216986726,+p29@XRCC5
Hg19::chr2:231790767..231790779,-p@chr2:231790767..231790779
-
Hg19::chr2:231808578..231808581,+p@chr2:231808578..231808581
+
Hg19::chr2:238767219..238767230,+p7@RAMP1
Hg19::chr2:238767237..238767248,+p5@RAMP1
Hg19::chr2:238767346..238767363,+p2@RAMP1
Hg19::chr2:238767388..238767402,+p4@RAMP1
Hg19::chr2:238767517..238767539,+p3@RAMP1
Hg19::chr2:238810193..238810202,+p@chr2:238810193..238810202
+
Hg19::chr2:27434497..27434509,-p19@SLC5A6
Hg19::chr2:45640405..45640412,-p@chr2:45640405..45640412
-
Hg19::chr2:50936065..50936067,+p@chr2:50936065..50936067
+
Hg19::chr2:61081057..61081064,+p@chr2:61081057..61081064
+
Hg19::chr2:65593906..65593917,-p11@SPRED2
Hg19::chr2:71056842..71056868,+p@chr2:71056842..71056868
+
Hg19::chr3:119188696..119188702,+p@chr3:119188696..119188702
+
Hg19::chr3:119188705..119188718,+p@chr3:119188705..119188718
+
Hg19::chr3:119198717..119198735,+p@chr3:119198717..119198735
+
Hg19::chr3:119278515..119278527,-p5@CD80
Hg19::chr3:182871832..182871843,-p@chr3:182871832..182871843
-
Hg19::chr3:182871844..182871855,-p@chr3:182871844..182871855
-
Hg19::chr3:182871897..182871916,-p@chr3:182871897..182871916
-
Hg19::chr3:182871928..182871939,-p@chr3:182871928..182871939
-
Hg19::chr3:182872005..182872022,-p@chr3:182872005..182872022
-
Hg19::chr3:182872047..182872055,-p@chr3:182872047..182872055
-
Hg19::chr3:182872057..182872068,-p@chr3:182872057..182872068
-
Hg19::chr3:182872082..182872093,-p@chr3:182872082..182872093
-
Hg19::chr3:182872116..182872132,-p@chr3:182872116..182872132
-
Hg19::chr3:182872144..182872153,-p@chr3:182872144..182872153
-
Hg19::chr3:182872174..182872187,-p@chr3:182872174..182872187
-
Hg19::chr3:182880514..182880528,-p1@LAMP3
Hg19::chr3:182880541..182880578,-p2@LAMP3
Hg19::chr3:197585687..197585697,+p3@LRCH3
Hg19::chr3:52813932..52813943,+p11@ITIH1
Hg19::chr3:52813951..52813958,+p13@ITIH1
Hg19::chr3:52813997..52814015,+p9@ITIH1
Hg19::chr3:98989626..98989627,+p@chr3:98989626..98989627
+
Hg19::chr4:103478257..103478273,+p28@NFKB1
Hg19::chr4:119947900..119947917,+p9@SYNPO2
Hg19::chr4:119947953..119947968,+p20@SYNPO2
Hg19::chr4:14845952..14845956,-p@chr4:14845952..14845956
-
Hg19::chr4:160141656..160141659,+p@chr4:160141656..160141659
+
Hg19::chr4:78079509..78079563,+p3@CCNG2
Hg19::chr4:78079570..78079586,+p7@CCNG2
Hg19::chr4:78079649..78079662,+p19@CCNG2
Hg19::chr4:83563607..83563621,-p@chr4:83563607..83563621
-
Hg19::chr4:83602084..83602095,-p23@SCD5
Hg19::chr5:75858160..75858165,+p@chr5:75858160..75858165
+
Hg19::chr6:106340773..106340776,-p@chr6:106340773..106340776
-
Hg19::chr6:106340792..106340805,-p@chr6:106340792..106340805
-
Hg19::chr6:106340812..106340852,-p@chr6:106340812..106340852
-
Hg19::chr6:106340857..106340862,-p@chr6:106340857..106340862
-
Hg19::chr6:20723063..20723072,+p@chr6:20723063..20723072
+
Hg19::chr6:26383377..26383395,+p3@BTN2A2
Hg19::chr6:32605173..32605190,+p1@HLA-DQA1
Hg19::chr6:32609190..32609204,+p18@HLA-DQA1
Hg19::chr6:32610515..32610535,+p16@HLA-DQA1
Hg19::chr6:32610814..32610817,+p28@HLA-DQA1
Hg19::chr6:32610846..32610863,+p5@HLA-DQA1
Hg19::chr6:33055198..33055203,+p@chr6:33055198..33055203
+
Hg19::chr6:33107633..33107670,-p@chr6:33107633..33107670
-
Hg19::chr6:41123284..41123294,-p@chr6:41123284..41123294
-
Hg19::chr6:6862008..6862024,-p@chr6:6862008..6862024
-
Hg19::chr7:106505959..106505980,+p4@PIK3CG
Hg19::chr7:106505988..106506018,+p6@PIK3CG
Hg19::chr7:106888874..106888913,-p@chr7:106888874..106888913
-
Hg19::chr7:106889102..106889113,-p@chr7:106889102..106889113
-
Hg19::chr7:111700086..111700089,-p@chr7:111700086..111700089
-
Hg19::chr7:150066722..150066738,+p10@REPIN1
Hg19::chr7:150070749..150070799,+p@chr7:150070749..150070799
+
Hg19::chr7:150102756..150102772,+p5@ZNF775
Hg19::chr7:150479143..150479154,-p@chr7:150479143..150479154
-
Hg19::chr7:150497625..150497646,-p10@TMEM176B
Hg19::chr7:150498814..150498826,-p8@TMEM176B
Hg19::chr7:150498868..150498890,+p11@TMEM176A
Hg19::chr7:150520561..150520563,+p@chr7:150520561..150520563
+
Hg19::chr7:151038850..151038915,+p1@NUB1
Hg19::chr7:22761970..22762002,-p@chr7:22761970..22762002
-
Hg19::chr7:22762017..22762024,-p@chr7:22762017..22762024
-
Hg19::chr7:30619042..30619046,-p@chr7:30619042..30619046
-
Hg19::chr7:6427818..6427822,+p@chr7:6427818..6427822
+
Hg19::chr7:6431430..6431437,+p@chr7:6431430..6431437
+
Hg19::chr8:39771370..39771382,+p2@IDO1
Hg19::chr8:39771400..39771420,+p1@IDO1
Hg19::chr8:39818857..39818873,+p@chr8:39818857..39818873
+
Hg19::chr9:102587069..102587091,+p@chr9:102587069..102587091
+
Hg19::chr9:113018779..113018796,-p1@TXN
Hg19::chr9:135665233..135665245,-p@chr9:135665233..135665245
-
Hg19::chr9:140056300..140056307,+p@chr9:140056300..140056307
+
Hg19::chr9:35227706..35227717,+p5@UNC13B
Hg19::chr9:35227753..35227762,+p6@UNC13B
Hg19::chrX:108780205..108780217,+p6@NXT2
Hg19::chrX:13707235..13707286,+p1@RAB9A
Hg19::chrX:13707290..13707304,+p2@RAB9A
Hg19::chrX:66877253..66877260,-p@chrX:66877253..66877260
-
Hg19::chrX:78200913..78200947,+p2@P2RY10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.0007234956333209790.026939572699544189Chemokine signaling pathway (KEGG):04062
1.14932691900024e-060.000363761969863575586Apoptosis (KEGG):04210
0.001982076863616450.04825594825650833116Vascular smooth muscle contraction (KEGG):04270
0.0001651405664652950.01716101738031054128Osteoclast differentiation (KEGG):04380
0.001371450069559410.03774469104483083102Toll-like receptor signaling pathway (KEGG):04620
8.56423035042436e-050.01355289452954664108T cell receptor signaling pathway (KEGG):04660
0.0005618795586004610.025404982899578375B cell receptor signaling pathway (KEGG):04662
0.0001594808775964770.0171610173803105349Intestinal immune network for IgA production (KEGG):04672
0.0001913132292925210.01716101738031054133Toxoplasmosis (KEGG):05145
0.001531643638934320.04039710097689283106Amoebiasis (KEGG):05146
0.0006282934057305470.02651398172182914182Tuberculosis (KEGG):05152
0.0005540771065774160.0254049828995784176Influenza A (KEGG):05164
0.0008095025639053010.0269692169974766385Small cell lung cancer (KEGG):05222
0.0002439955077769270.0171610173803105211Osteopontin Signaling (Wikipathways):WP1434
0.0002328154789181280.01716101738031054140Regulation of toll-like receptor signaling pathway (Wikipathways):WP1449
0.0008660881115573470.02741168873079387MicroRNAs in cardiomyocyte hypertrophy (Wikipathways):WP1544
2.77565538333288e-050.00585663285883237481Apoptosis Modulation and Signaling (Wikipathways):WP1772
0.0007093083553436820.026939572699544188TNF-alpha/NF-kB Signaling Pathway (Wikipathways):WP231
0.001009385666843730.0304257679577181222EBV LMP1 signaling (Wikipathways):WP262
0.0004054521671066260.02138760181487454162MAPK signaling pathway (Wikipathways):WP382
0.001371450069559410.03774469104483083102Toll-like receptor signaling pathway (Wikipathways):WP75
0.0007712362400778370.02696921699747666511Signaling in Immune system (Reactome):REACT_6900
0.0004054521671066260.02138760181487454162TNF alpha/NF-kB down reg. targets (Netpath):NetPath_9
0.001911274528665470.04825594825650834246B Cell Receptor up reg. targets (Netpath):NetPath_12
0.0003430046337686950.02138760181487454155IL-1 up reg. targets (Netpath):NetPath_13
2.04164496673815e-081.29236126394525e-058217IL-4 up reg. targets (Netpath):NetPath_16



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0032502developmental process0.000377841516044536
GO:0048869cellular developmental process0.00628566792223742
GO:0030154cell differentiation0.00628566792223742
GO:0005886plasma membrane0.0494507038038988
GO:0043066negative regulation of apoptosis0.0494507038038988
GO:0032623interleukin-2 production0.0494507038038988
GO:0043069negative regulation of programmed cell death0.0494507038038988
GO:0044464cell part0.0494507038038988



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.09698e-09
MA0004.10.0133184
MA0006.10.288479
MA0007.10.0169138
MA0009.10.741982
MA0014.13.94486e-06
MA0017.11.77598
MA0019.10.239599
MA0024.10.0729153
MA0025.10.0160576
MA0027.11.00082
MA0028.13.70356e-07
MA0029.10.0100109
MA0030.10.0311386
MA0031.10.0400757
MA0038.10.215122
MA0040.10.0373889
MA0041.10.0201949
MA0042.10.058768
MA0043.10.00443122
MA0046.10.07079
MA0048.10.0477778
MA0050.10.731552
MA0051.12.3255
MA0052.10.0951323
MA0055.10.183242
MA0056.10
MA0057.10.0136576
MA0058.10.000723606
MA0059.10.063031
MA0060.10.0342048
MA0061.18.25589
MA0063.10
MA0066.10.559776
MA0067.10.201515
MA0068.10.799002
MA0069.10.15472
MA0070.10.0195452
MA0071.14.8754
MA0072.10.636442
MA0073.12.32395e-07
MA0074.10.0817847
MA0076.13.36645e-07
MA0077.10.129747
MA0078.10.703733
MA0081.11.02904
MA0083.11.39045
MA0084.10.127313
MA0087.10.0585289
MA0088.10.199471
MA0089.10
MA0090.10.306738
MA0091.10.121374
MA0092.10.356496
MA0093.10.00343804
MA0095.10
MA0098.10
MA0100.10.0323599
MA0101.13.66447
MA0103.10.665308
MA0105.10.552256
MA0106.10.000879259
MA0107.17.83429
MA0108.20.787741
MA0109.10
MA0111.12.02527
MA0113.10.528308
MA0114.10.532768
MA0115.10.932226
MA0116.10.00232551
MA0117.10.220154
MA0119.10.603401
MA0122.10.44659
MA0124.10.270028
MA0125.10.572552
MA0130.10
MA0131.10.203344
MA0132.10
MA0133.10
MA0135.10.210318
MA0136.10.155374
MA0139.10.0222004
MA0140.10.0459291
MA0141.15.32878
MA0142.10.122286
MA0143.10.272629
MA0144.10.653243
MA0145.10.0117649
MA0146.10.00199944
MA0147.10.013933
MA0148.10.0113592
MA0149.10.573316
MA0062.27.21774e-07
MA0035.20.125305
MA0039.20.0349275
MA0138.20.266276
MA0002.21.7832
MA0137.21.89041
MA0104.20.0100674
MA0047.20.0412769
MA0112.20.296152
MA0065.20.169508
MA0150.10.15361
MA0151.10
MA0152.10.831654
MA0153.10.0579601
MA0154.10.950194
MA0155.10.025969
MA0156.10.0571867
MA0157.10.260956
MA0158.10
MA0159.10.8917
MA0160.13.98959
MA0161.10
MA0162.11.0817e-07
MA0163.10.00417384
MA0164.10.0165476
MA0080.20.564927
MA0018.20.233381
MA0099.20.139373
MA0079.23.37475e-10
MA0102.20.145666
MA0258.11.48923
MA0259.10.118107
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BATF#10538221.873677060946430.003913172685461650.0190690482501367
EBF1#1879461.432508653643970.008143700141435840.0321594093496963
MAFK#7975211.989913971658840.002408630508792760.0135799482675344
MEF2A#4205251.638394310283570.01123076063003850.0412335445911759
NFKB1#4790701.343232306620870.004932250986343850.0230488773888212
RXRA#6256261.824965194466660.00250984768875780.0140769014964919
SPI1#6688561.606440966703750.0002328489880028030.00255822800947031



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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