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{{Coexpression_clusters
{
|full_id=C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic
|gostat_on_coexpression_clusters=

Latest revision as of 10:22, 17 September 2013


Full id: C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic



Phase1 CAGE Peaks

Hg19::chr10:109358956..109358964,+p@chr10:109358956..109358964
+
Hg19::chr10:119000662..119000688,+p2@SLC18A2
Hg19::chr10:119026252..119026270,+p@chr10:119026252..119026270
+
Hg19::chr10:119026276..119026280,+p@chr10:119026276..119026280
+
Hg19::chr10:128075632..128075641,+p@chr10:128075632..128075641
+
Hg19::chr10:20011515..20011519,-p@chr10:20011515..20011519
-
Hg19::chr10:71561029..71561064,+p@chr10:71561029..71561064
+
Hg19::chr10:75567729..75567735,-p23@NDST2
Hg19::chr11:113318454..113318463,-p10@DRD2
Hg19::chr11:123946147..123946152,-p@chr11:123946147..123946152
-
Hg19::chr11:123946613..123946620,-p@chr11:123946613..123946620
-
Hg19::chr11:123946813..123946828,+p@chr11:123946813..123946828
+
Hg19::chr11:123946996..123947019,+p@chr11:123946996..123947019
+
Hg19::chr11:123947036..123947047,+p@chr11:123947036..123947047
+
Hg19::chr11:123949311..123949317,-p@chr11:123949311..123949317
-
Hg19::chr11:123967181..123967213,-p@chr11:123967181..123967213
-
Hg19::chr11:123986842..123986855,+p@chr11:123986842..123986855
+
Hg19::chr11:123988337..123988344,+p@chr11:123988337..123988344
+
Hg19::chr11:123988362..123988388,+p@chr11:123988362..123988388
+
Hg19::chr11:123988399..123988400,+p@chr11:123988399..123988400
+
Hg19::chr11:123989006..123989027,+p@chr11:123989006..123989027
+
Hg19::chr11:125464851..125464858,+p45@STT3A
Hg19::chr11:126295602..126295611,-p@chr11:126295602..126295611
-
Hg19::chr11:126295618..126295629,-p@chr11:126295618..126295629
-
Hg19::chr11:126295633..126295636,-p@chr11:126295633..126295636
-
Hg19::chr11:13443229..13443279,-p@chr11:13443229..13443279
-
Hg19::chr11:2497033..2497058,+p@chr11:2497033..2497058
+
Hg19::chr11:59856130..59856143,+p1@MS4A2
Hg19::chr11:59856586..59856610,-p@chr11:59856586..59856610
-
Hg19::chr11:59857246..59857255,+p@chr11:59857246..59857255
+
Hg19::chr11:59864466..59864498,+p@chr11:59864466..59864498
+
Hg19::chr11:59864658..59864704,+p@chr11:59864658..59864704
+
Hg19::chr11:62160536..62160549,-p1@ENST00000526045
Hg19::chr11:62164133..62164136,-p@chr11:62164133..62164136
-
Hg19::chr11:62164401..62164409,+p@chr11:62164401..62164409
+
Hg19::chr11:62687586..62687591,+p@chr11:62687586..62687591
+
Hg19::chr11:62687610..62687613,+p@chr11:62687610..62687613
+
Hg19::chr11:62687625..62687637,+p@chr11:62687625..62687637
+
Hg19::chr11:78140882..78140902,-p1@ENST00000513207
Hg19::chr11:86711425..86711456,-p@chr11:86711425..86711456
-
Hg19::chr12:122826038..122826058,-p17@CLIP1
Hg19::chr12:51773539..51773553,-p7@GALNT6
Hg19::chr12:51773572..51773577,-p15@GALNT6
Hg19::chr12:51773597..51773612,-p5@GALNT6
Hg19::chr12:51773643..51773648,-p16@GALNT6
Hg19::chr12:53071270..53071311,-p2@KRT1
Hg19::chr12:53142714..53142730,+p1@ENST00000549824
Hg19::chr12:53818855..53818919,+p1@AMHR2
Hg19::chr12:65146706..65146711,-p17@GNS
Hg19::chr13:109328158..109328167,+p@chr13:109328158..109328167
+
Hg19::chr13:109328178..109328195,+p@chr13:109328178..109328195
+
Hg19::chr13:109328242..109328248,+p@chr13:109328242..109328248
+
Hg19::chr13:29291437..29291443,+p@chr13:29291437..29291443
+
Hg19::chr14:21938873..21938912,-p@chr14:21938873..21938912
-
Hg19::chr14:24042158..24042170,-p18@JPH4
Hg19::chr14:24042184..24042215,-p15@JPH4
Hg19::chr14:24983441..24983444,-p@chr14:24983441..24983444
-
Hg19::chr14:25043663..25043670,-p@chr14:25043663..25043670
-
Hg19::chr14:25045446..25045464,-p1@CTSG
Hg19::chr14:52726268..52726282,-p@chr14:52726268..52726282
-
Hg19::chr14:54899912..54899921,-p@chr14:54899912..54899921
-
Hg19::chr14:54899928..54899942,-p@chr14:54899928..54899942
-
Hg19::chr14:64931992..64932017,+p3@AKAP5
Hg19::chr14:64932021..64932043,+p5@AKAP5
Hg19::chr14:70722346..70722353,+p@chr14:70722346..70722353
+
Hg19::chr14:88507103..88507114,-p@chr14:88507103..88507114
-
Hg19::chr14:88507124..88507131,-p@chr14:88507124..88507131
-
Hg19::chr14:91526462..91526473,-p5@RPS6KA5
Hg19::chr15:40601264..40601299,+p@chr15:40601264..40601299
+
Hg19::chr15:50551716..50551726,+p@chr15:50551716..50551726
+
Hg19::chr15:50557915..50557941,-p1@HDC
Hg19::chr15:69594438..69594449,+p@chr15:69594438..69594449
+
Hg19::chr15:69678034..69678054,+p@chr15:69678034..69678054
+
Hg19::chr15:84295121..84295125,+p@chr15:84295121..84295125
+
Hg19::chr16:20856287..20856295,+p@chr16:20856287..20856295
+
Hg19::chr16:68093910..68093921,+p@chr16:68093910..68093921
+
Hg19::chr16:68113591..68113602,-p@chr16:68113591..68113602
-
Hg19::chr16:68119821..68119868,+p@chr16:68119821..68119868
+
Hg19::chr16:68119901..68119916,+p@chr16:68119901..68119916
+
Hg19::chr16:68120508..68120520,+p9@NFATC3
Hg19::chr16:70467096..70467101,-p@chr16:70467096..70467101
-
Hg19::chr16:70467136..70467140,-p@chr16:70467136..70467140
-
Hg19::chr16:71807190..71807201,-p@chr16:71807190..71807201
-
Hg19::chr16:71807203..71807210,-p@chr16:71807203..71807210
-
Hg19::chr16:71807218..71807219,-p@chr16:71807218..71807219
-
Hg19::chr17:19545759..19545803,-p@chr17:19545759..19545803
-
Hg19::chr17:2792811..2792821,+p@chr17:2792811..2792821
+
Hg19::chr17:42466963..42466982,-p3@ITGA2B
Hg19::chr17:42466993..42467000,-p7@ITGA2B
Hg19::chr17:42467001..42467024,-p2@ITGA2B
Hg19::chr17:47685267..47685301,-p@chr17:47685267..47685301
-
Hg19::chr17:71095857..71095877,-p@chr17:71095857..71095877
-
Hg19::chr17:71306029..71306038,-p@chr17:71306029..71306038
-
Hg19::chr17:78135291..78135293,+p@chr17:78135291..78135293
+
Hg19::chr18:52471647..52471662,+p@chr18:52471647..52471662
+
Hg19::chr18:52473474..52473481,+p@chr18:52473474..52473481
+
Hg19::chr18:52495622..52495633,+p3@RAB27B
Hg19::chr18:52495637..52495719,+p1@RAB27B
Hg19::chr18:52495730..52495737,+p4@RAB27B
Hg19::chr18:52495804..52495818,+p2@RAB27B
Hg19::chr18:52498302..52498349,+p@chr18:52498302..52498349
+
Hg19::chr18:52498382..52498387,+p@chr18:52498382..52498387
+
Hg19::chr18:77735081..77735093,-p@chr18:77735081..77735093
-
Hg19::chr19:17000058..17000065,+p10@F2RL3
Hg19::chr19:18426858..18426889,-p4@LSM4
Hg19::chr19:35819875..35819882,+p6@CD22
Hg19::chr19:35819896..35819919,+p2@CD22
Hg19::chr19:35819925..35819928,+p11@CD22
Hg19::chr19:35819950..35819960,+p5@CD22
Hg19::chr19:35819973..35819984,+p4@CD22
Hg19::chr19:35836903..35836914,+p@chr19:35836903..35836914
+
Hg19::chr19:51670636..51670662,+p1@ENST00000305812
p1@ENST00000341811
Hg19::chr19:51961061..51961069,-p@chr19:51961061..51961069
-
Hg19::chr19:52020728..52020739,-p@chr19:52020728..52020739
-
Hg19::chr19:52020788..52020793,-p@chr19:52020788..52020793
-
Hg19::chr19:52021217..52021227,-p@chr19:52021217..52021227
-
Hg19::chr19:52022176..52022186,-p@chr19:52022176..52022186
-
Hg19::chr19:52022191..52022212,-p@chr19:52022191..52022212
-
Hg19::chr19:52023026..52023039,-p@chr19:52023026..52023039
-
Hg19::chr19:52023160..52023173,-p@chr19:52023160..52023173
-
Hg19::chr19:52031458..52031462,-p@chr19:52031458..52031462
-
Hg19::chr19:52032253..52032254,-p@chr19:52032253..52032254
-
Hg19::chr19:52033094..52033111,-p@chr19:52033094..52033111
-
Hg19::chr19:52034278..52034288,-p@chr19:52034278..52034288
-
Hg19::chr19:52034316..52034326,-p@chr19:52034316..52034326
-
Hg19::chr19:52034865..52034880,-p2@SIGLEC6
Hg19::chr19:52034902..52034912,-p5@SIGLEC6
Hg19::chr19:52034913..52034930,-p1@SIGLEC6
Hg19::chr19:52034995..52035012,-p4@SIGLEC6
Hg19::chr19:56673770..56673786,-p@chr19:56673770..56673786
-
Hg19::chr1:12445353..12445368,+p@chr1:12445353..12445368
+
Hg19::chr1:12445376..12445392,+p@chr1:12445376..12445392
+
Hg19::chr1:159272111..159272136,+p1@FCER1A
Hg19::chr1:160147176..160147200,+p1@ATP1A4
Hg19::chr1:184452333..184452356,+p@chr1:184452333..184452356
+
Hg19::chr1:205649747..205649751,-p10@ELK4
p4@SLC45A3
Hg19::chr1:206257775..206257791,-p@chr1:206257775..206257791
-
Hg19::chr1:22150355..22150396,-p49@HSPG2
Hg19::chr1:228555753..228555757,+p@chr1:228555753..228555757
+
Hg19::chr1:235080935..235080947,+p@chr1:235080935..235080947
+
Hg19::chr1:236015388..236015397,-p@chr1:236015388..236015397
-
Hg19::chr1:247737511..247737525,+p@chr1:247737511..247737525
+
Hg19::chr1:2485669..2485677,+p@chr1:2485669..2485677
+
Hg19::chr1:26393459..26393465,-p@chr1:26393459..26393465
-
Hg19::chr1:54695397..54695402,+p@chr1:54695397..54695402
+
Hg19::chr20:19193331..19193419,+p1@SLC24A3
Hg19::chr20:31124970..31124993,-p@chr20:31124970..31124993
-
Hg19::chr20:31125041..31125049,-p@chr20:31125041..31125049
-
Hg19::chr20:35504562..35504578,+p2@C20orf118
Hg19::chr20:6035530..6035548,+p@chr20:6035530..6035548
+
Hg19::chr21:42520565..42520614,-p@chr21:42520565..42520614
-
Hg19::chr21:42521405..42521417,+p@chr21:42521405..42521417
+
Hg19::chr22:33265086..33265128,-p10@SYN3
Hg19::chr2:12417854..12417863,+p@chr2:12417854..12417863
+
Hg19::chr2:12417886..12417905,+p@chr2:12417886..12417905
+
Hg19::chr2:129076648..129076667,-p2@HS6ST1
Hg19::chr2:159987093..159987105,+p@chr2:159987093..159987105
+
Hg19::chr2:160019905..160019914,+p@chr2:160019905..160019914
+
Hg19::chr2:160019920..160019933,+p@chr2:160019920..160019933
+
Hg19::chr2:160019935..160019944,+p@chr2:160019935..160019944
+
Hg19::chr2:160019947..160019958,+p@chr2:160019947..160019958
+
Hg19::chr2:160085182..160085196,+p@chr2:160085182..160085196
+
Hg19::chr2:160085209..160085216,+p@chr2:160085209..160085216
+
Hg19::chr2:178260297..178260308,+p@chr2:178260297..178260308
+
Hg19::chr2:178260323..178260330,+p@chr2:178260323..178260330
+
Hg19::chr2:192711926..192711937,-p3@SDPR
Hg19::chr2:192711954..192711965,-p2@SDPR
Hg19::chr2:208119056..208119067,-p@chr2:208119056..208119067
-
Hg19::chr2:208119163..208119174,-p@chr2:208119163..208119174
-
Hg19::chr2:97267518..97267521,-p19@KANSL3
Hg19::chr2:97267529..97267537,-p18@KANSL3
Hg19::chr3:128205217..128205230,-p@chr3:128205217..128205230
-
Hg19::chr3:128206021..128206049,-p1@AB463675
Hg19::chr3:128325165..128325187,+p@chr3:128325165..128325187
+
Hg19::chr3:148596943..148596946,+p@chr3:148596943..148596946
+
Hg19::chr3:148601463..148601474,+p@chr3:148601463..148601474
+
Hg19::chr3:148601515..148601526,+p@chr3:148601515..148601526
+
Hg19::chr3:148609171..148609215,+p@chr3:148609171..148609215
+
Hg19::chr3:148610802..148610829,+p@chr3:148610802..148610829
+
Hg19::chr3:15032045..15032056,+p@chr3:15032045..15032056
+
Hg19::chr3:4867486..4867495,-p@chr3:4867486..4867495
-
Hg19::chr3:4867513..4867523,-p@chr3:4867513..4867523
-
Hg19::chr3:52232168..52232186,+p1@ALAS1
Hg19::chr3:52233260..52233288,+p3@ALAS1
Hg19::chr3:52233290..52233308,+p5@ALAS1
Hg19::chr3:52233373..52233385,+p6@ALAS1
Hg19::chr3:60965299..60965308,-p@chr3:60965299..60965308
-
Hg19::chr3:69540997..69541004,-p@chr3:69540997..69541004
-
Hg19::chr3:69788576..69788648,+p1@MITF
Hg19::chr3:71257422..71257429,-p@chr3:71257422..71257429
-
Hg19::chr3:71257440..71257454,-p@chr3:71257440..71257454
-
Hg19::chr3:71257526..71257537,-p@chr3:71257526..71257537
-
Hg19::chr3:71257538..71257548,-p@chr3:71257538..71257548
-
Hg19::chr4:147443027..147443038,-p3@SLC10A7
Hg19::chr4:174210609..174210621,-p@chr4:174210609..174210621
-
Hg19::chr4:174210627..174210638,-p@chr4:174210627..174210638
-
Hg19::chr4:174210641..174210647,-p@chr4:174210641..174210647
-
Hg19::chr4:175415345..175415351,-p@chr4:175415345..175415351
-
Hg19::chr4:175431058..175431062,-p@chr4:175431058..175431062
-
Hg19::chr4:175436992..175437014,-p@chr4:175436992..175437014
-
Hg19::chr4:175437634..175437648,-p@chr4:175437634..175437648
-
Hg19::chr4:175438053..175438082,-p@chr4:175438053..175438082
-
Hg19::chr4:175442368..175442381,-p@chr4:175442368..175442381
-
Hg19::chr4:175443630..175443646,-p1@HPGD
Hg19::chr4:55524117..55524135,+p1@KIT
Hg19::chr4:55527591..55527596,+p@chr4:55527591..55527596
+
Hg19::chr4:55561701..55561712,+p@chr4:55561701..55561712
+
Hg19::chr4:55573349..55573359,+p@chr4:55573349..55573359
+
Hg19::chr4:55595497..55595514,+p5@KIT
Hg19::chr4:55602942..55602953,+p@chr4:55602942..55602953
+
Hg19::chr4:55604673..55604687,+p@chr4:55604673..55604687
+
Hg19::chr4:55606051..55606062,+p@chr4:55606051..55606062
+
Hg19::chr4:83491765..83491780,-p@chr4:83491765..83491780
-
Hg19::chr4:83491786..83491804,-p@chr4:83491786..83491804
-
Hg19::chr4:95209818..95209847,-p@chr4:95209818..95209847
-
Hg19::chr4:95215206..95215218,-p@chr4:95215206..95215218
-
Hg19::chr4:95247971..95247982,-p@chr4:95247971..95247982
-
Hg19::chr4:95248010..95248018,-p@chr4:95248010..95248018
-
Hg19::chr4:95261065..95261071,+p@chr4:95261065..95261071
+
Hg19::chr4:95263965..95263976,-p3@HPGDS
Hg19::chr5:14593906..14593910,-p@chr5:14593906..14593910
-
Hg19::chr5:150159726..150159733,-p@chr5:150159726..150159733
-
Hg19::chr5:150159743..150159761,-p@chr5:150159743..150159761
-
Hg19::chr5:150163198..150163202,-p@chr5:150163198..150163202
-
Hg19::chr5:169702760..169702762,-p@chr5:169702760..169702762
-
Hg19::chr5:169780485..169780498,+p3@KCNIP1
Hg19::chr5:169780503..169780508,+p16@KCNIP1
Hg19::chr5:179192669..179192684,+p4@MAML1
Hg19::chr5:179220979..179220997,+p2@LTC4S
Hg19::chr5:179221003..179221024,+p1@LTC4S
Hg19::chr5:179221043..179221054,+p3@LTC4S
Hg19::chr5:179222619..179222643,+p5@LTC4S
Hg19::chr5:74489251..74489258,-p@chr5:74489251..74489258
-
Hg19::chr5:95385787..95385798,+p4@ENST00000507997
Hg19::chr5:95385819..95385852,+p1@ENST00000507997
Hg19::chr5:96840389..96840421,+p1@ENST00000504012
Hg19::chr6:131959140..131959147,+p@chr6:131959140..131959147
+
Hg19::chr6:132006585..132006609,+p@chr6:132006585..132006609
+
Hg19::chr6:16388702..16388707,-p@chr6:16388702..16388707
-
Hg19::chr6:16388717..16388738,-p@chr6:16388717..16388738
-
Hg19::chr6:16388775..16388782,-p@chr6:16388775..16388782
-
Hg19::chr6:16388792..16388793,-p@chr6:16388792..16388793
-
Hg19::chr6:16514611..16514651,-p@chr6:16514611..16514651
-
Hg19::chr6:23456883..23456894,+p@chr6:23456883..23456894
+
Hg19::chr6:23457629..23457635,-p@chr6:23457629..23457635
-
Hg19::chr6:23469289..23469306,+p@chr6:23469289..23469306
+
Hg19::chr6:26350803..26350821,-p@chr6:26350803..26350821
-
Hg19::chr6:57326004..57326011,+p@chr6:57326004..57326011
+
Hg19::chr6:57326143..57326159,+p@chr6:57326143..57326159
+
Hg19::chr7:106372875..106372887,-p1@ENST00000490856
Hg19::chr7:106372908..106372919,-p2@ENST00000490856
Hg19::chr7:112233172..112233176,+p@chr7:112233172..112233176
+
Hg19::chr7:117432025..117432039,-p11@CTTNBP2
Hg19::chr7:117512216..117512259,-p3@CTTNBP2
Hg19::chr7:117512264..117512281,-p5@CTTNBP2
Hg19::chr7:117512427..117512436,+p@chr7:117512427..117512436
+
Hg19::chr7:117512455..117512471,+p@chr7:117512455..117512471
+
Hg19::chr7:117513514..117513523,-p7@CTTNBP2
Hg19::chr7:117513774..117513788,-p10@CTTNBP2
Hg19::chr7:138310746..138310787,-p1@SVOPL
Hg19::chr7:138310867..138310878,-p3@SVOPL
Hg19::chr7:138317555..138317567,-p@chr7:138317555..138317567
-
Hg19::chr7:139685159..139685166,-p@chr7:139685159..139685166
-
Hg19::chr7:150771479..150771488,+p@chr7:150771479..150771488
+
Hg19::chr7:157647123..157647133,+p3@ENST00000436151
Hg19::chr7:157647152..157647159,+p4@ENST00000436151
Hg19::chr7:157647221..157647240,+p2@ENST00000436151
Hg19::chr7:79758381..79758399,-p@chr7:79758381..79758399
-
Hg19::chr7:92282620..92282626,+p@chr7:92282620..92282626
+
Hg19::chr7:92282632..92282635,+p@chr7:92282632..92282635
+
Hg19::chr8:128902457..128902473,+p19@PVT1
Hg19::chr8:128902476..128902500,+p14@PVT1
Hg19::chr8:27619976..27619986,-p@chr8:27619976..27619986
-
Hg19::chr8:27620007..27620014,-p@chr8:27620007..27620014
-
Hg19::chr8:29352783..29352818,+p@chr8:29352783..29352818
+
Hg19::chr8:81214082..81214083,+p@chr8:81214082..81214083
+
Hg19::chr9:116448159..116448161,+p@chr9:116448159..116448161
+
Hg19::chr9:73196405..73196436,+p@chr9:73196405..73196436
+
Hg19::chrX:100617761..100617773,-p3@BTK
Hg19::chrX:117700092..117700116,+p@chrX:117700092..117700116
+
Hg19::chrX:148602600..148602637,-p27@IDS
Hg19::chrX:155234152..155234153,+p8@IL9R
Hg19::chrX:31838146..31838158,-p@chrX:31838146..31838158
-
Hg19::chrX:43727745..43727750,-p@chrX:43727745..43727750
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.0004084824907499070.0392915054717728219Glycosaminoglycan degradation (KEGG):00531
5.97745207276168e-050.018918635810290791138Metabolic pathways (KEGG):01100
1.1404796683487e-050.00721923630064726488Hematopoietic cell lineage (KEGG):04640
0.000228316420130650.0337020096262946375B cell receptor signaling pathway (KEGG):04662
0.0002662086068427690.0337020096262946379Fc epsilon RI signaling pathway (KEGG):04664
0.0005006398248503580.0396131261412846221Nicotine Activity on Dopaminergic Neurons (Wikipathways):WP1602
0.0001783291082595780.0337020096262946369Kit Receptor Signaling Pathway (Wikipathways):WP304
0.0004345032200669970.03929150547177285406{GRB2,414} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0044459plasma membrane part6.2062644451875e-06
GO:0016020membrane1.99708048901291e-05
GO:0044425membrane part2.24528527276455e-05
GO:0005886plasma membrane5.88970166873583e-05
GO:0005887integral to plasma membrane8.69980399503271e-05
GO:0031226intrinsic to plasma membrane8.69980399503271e-05
GO:0019370leukotriene biosynthetic process0.000287815957469235
GO:0043450alkene biosynthetic process0.000287815957469235
GO:0016021integral to membrane0.000361066901149375
GO:0031224intrinsic to membrane0.000364225469261048
GO:0006691leukotriene metabolic process0.000555625194960442
GO:0043449alkene metabolic process0.000555625194960442
GO:0046456icosanoid biosynthetic process0.000621438032861417
GO:0007267cell-cell signaling0.000754890752863334
GO:0000267cell fraction0.000754890752863334
GO:0019863IgE binding0.000754890752863334
GO:0007154cell communication0.000754890752863334
GO:0005624membrane fraction0.000989206728433819
GO:0007268synaptic transmission0.0013557281985812
GO:0006690icosanoid metabolic process0.0013557281985812
GO:0009897external side of plasma membrane0.0013557281985812
GO:0044464cell part0.0013557281985812
GO:0015012heparan sulfate proteoglycan biosynthetic process0.00196070523304531
GO:0019226transmission of nerve impulse0.00200124420200425
GO:0030201heparan sulfate proteoglycan metabolic process0.00329908471299796
GO:0006633fatty acid biosynthetic process0.00341927754194821
GO:0016053organic acid biosynthetic process0.00464928351396739
GO:0046394carboxylic acid biosynthetic process0.00464928351396739
GO:0031420alkali metal ion binding0.00482183126304149
GO:0048066pigmentation during development0.00482183126304149
GO:0019865immunoglobulin binding0.00482183126304149
GO:0031402sodium ion binding0.0062541307242965
GO:0030317sperm motility0.00693857836307523
GO:0030166proteoglycan biosynthetic process0.00693857836307523
GO:0019932second-messenger-mediated signaling0.00843897173742179
GO:0018193peptidyl-amino acid modification0.0109609675054676
GO:0006029proteoglycan metabolic process0.0130802208270065
GO:0005901caveola0.0130802208270065
GO:0032501multicellular organismal process0.0130802208270065
GO:0007165signal transduction0.0134360306419679
GO:0008484sulfuric ester hydrolase activity0.0148766916356193
GO:0030955potassium ion binding0.01496247897959
GO:0009986cell surface0.0164736719574906
GO:0005529sugar binding0.017641471836277
GO:0019722calcium-mediated signaling0.0181091204358118
GO:0009605response to external stimulus0.0181091204358118
GO:0005020stem cell factor receptor activity0.0181091204358118
GO:0004464leukotriene-C4 synthase activity0.0181091204358118
GO:0019983interleukin-9 binding0.0181091204358118
GO:0004261cathepsin G activity0.0181091204358118
GO:0004398histidine decarboxylase activity0.0181091204358118
GO:0008449N-acetylglucosamine-6-sulfatase activity0.0181091204358118
GO:0004919interleukin-9 receptor activity0.0181091204358118
GO:0004423iduronate-2-sulfatase activity0.0181091204358118
GO:0005688snRNP U60.0181091204358118
GO:0019372lipoxygenase pathway0.0181091204358118
GO:0030324lung development0.0181091204358118
GO:0018108peptidyl-tyrosine phosphorylation0.0181091204358118
GO:0030323respiratory tube development0.0185015770210732
GO:0006814sodium ion transport0.0185015770210732
GO:0018212peptidyl-tyrosine modification0.0188880257382508
GO:0005057receptor signaling protein activity0.0191159753849701
GO:0044272sulfur compound biosynthetic process0.0191236807095353
GO:0045121lipid raft0.0196647675455426
GO:0005515protein binding0.0204422281645964
GO:0030203glycosaminoglycan metabolic process0.0216145800295139
GO:0006631fatty acid metabolic process0.0218354579783783
GO:0006022aminoglycan metabolic process0.0218354579783783
GO:0009611response to wounding0.0228039576697707
GO:0008146sulfotransferase activity0.0228039576697707
GO:0016740transferase activity0.0228039576697707
GO:0045055regulated secretory pathway0.0230246989895528
GO:0048518positive regulation of biological process0.0230246989895528
GO:0005509calcium ion binding0.023409137407097
GO:0001812positive regulation of type I hypersensitivity0.023409137407097
GO:0032632interleukin-3 production0.023409137407097
GO:0032998Fc-epsilon receptor I complex0.023409137407097
GO:0042223interleukin-3 biosynthetic process0.023409137407097
GO:0019767IgE receptor activity0.023409137407097
GO:0032997Fc receptor complex0.023409137407097
GO:0001810regulation of type I hypersensitivity0.023409137407097
GO:0045401positive regulation of interleukin-3 biosynthetic process0.023409137407097
GO:0001867complement activation, lectin pathway0.023409137407097
GO:0016572histone phosphorylation0.023409137407097
GO:0007195dopamine receptor, adenylate cyclase inhibiting pathway0.023409137407097
GO:0001820serotonin secretion0.023409137407097
GO:0045399regulation of interleukin-3 biosynthetic process0.023409137407097
GO:0016782transferase activity, transferring sulfur-containing groups0.0256688207315552
GO:0044444cytoplasmic part0.0256688207315552
GO:0007166cell surface receptor linked signal transduction0.0263190028266626
GO:0030246carbohydrate binding0.0263190028266626
GO:0009058biosynthetic process0.0263190028266626
GO:0043406positive regulation of MAP kinase activity0.0263190028266626
GO:0005882intermediate filament0.0263190028266626
GO:0045111intermediate filament cytoskeleton0.0263190028266626
GO:0006468protein amino acid phosphorylation0.0263190028266626
GO:0044262cellular carbohydrate metabolic process0.0263190028266626
GO:0003001generation of a signal involved in cell-cell signaling0.0263190028266626
GO:001640415-hydroxyprostaglandin dehydrogenase (NAD+) activity0.0263190028266626
GO:0008273calcium, potassium:sodium antiporter activity0.0263190028266626
GO:0048286alveolus development0.0263190028266626
GO:0043306positive regulation of mast cell degranulation0.0263190028266626
GO:0002712regulation of B cell mediated immunity0.0263190028266626
GO:0001880Mullerian duct regression0.0263190028266626
GO:0002863positive regulation of inflammatory response to antigenic stimulus0.0263190028266626
GO:0045921positive regulation of exocytosis0.0263190028266626
GO:0045425positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process0.0263190028266626
GO:0043302positive regulation of leukocyte degranulation0.0263190028266626
GO:0002885positive regulation of hypersensitivity0.0263190028266626
GO:0019763immunoglobulin receptor activity0.0263190028266626
GO:0002866positive regulation of acute inflammatory response to antigenic stimulus0.0263190028266626
GO:0015015heparan sulfate proteoglycan biosynthetic process, enzymatic modification0.0263190028266626
GO:0002675positive regulation of acute inflammatory response0.0263190028266626
GO:0002889regulation of immunoglobulin mediated immune response0.0263190028266626
GO:0002891positive regulation of immunoglobulin mediated immune response0.0263190028266626
GO:0002714positive regulation of B cell mediated immunity0.0263190028266626
GO:0006959humoral immune response0.0281782614966539
GO:0006813potassium ion transport0.0285051202749976
GO:0015672monovalent inorganic cation transport0.0297760356794334
GO:0004872receptor activity0.0297760356794334
GO:0002526acute inflammatory response0.0299129190516467
GO:0008324cation transmembrane transporter activity0.0299129190516467
GO:0050877neurological system process0.0299129190516467
GO:0060033anatomical structure regression0.0299129190516467
GO:0045423regulation of granulocyte macrophage colony-stimulating factor biosynthetic process0.0299129190516467
GO:0019369arachidonic acid metabolic process0.0299129190516467
GO:0002861regulation of inflammatory response to antigenic stimulus0.0299129190516467
GO:00038705-aminolevulinate synthase activity0.0299129190516467
GO:0002673regulation of acute inflammatory response0.0299129190516467
GO:0016749N-succinyltransferase activity0.0299129190516467
GO:0060158dopamine receptor, phospholipase C activating pathway0.0299129190516467
GO:0002864regulation of acute inflammatory response to antigenic stimulus0.0299129190516467
GO:0043304regulation of mast cell degranulation0.0299129190516467
GO:0002883regulation of hypersensitivity0.0299129190516467
GO:0016068type I hypersensitivity0.0299129190516467
GO:0015016[heparan sulfate]-glucosamine N-sulfotransferase activity0.0299129190516467
GO:0050778positive regulation of immune response0.0307121634142691
GO:0002684positive regulation of immune system process0.0309662108255466
GO:0006790sulfur metabolic process0.0309662108255466
GO:0007200G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)0.032148810727699
GO:0032787monocarboxylic acid metabolic process0.0327559154739174
GO:0006954inflammatory response0.0337907850744836
GO:0043405regulation of MAP kinase activity0.0338803630712217
GO:0043300regulation of leukocyte degranulation0.0338803630712217
GO:0032604granulocyte macrophage colony-stimulating factor production0.0338803630712217
GO:0008504monoamine transmembrane transporter activity0.0338803630712217
GO:0042253granulocyte macrophage colony-stimulating factor biosynthetic process0.0338803630712217
GO:0050850positive regulation of calcium-mediated signaling0.0338803630712217
GO:0001786phosphatidylserine binding0.0338803630712217
GO:0015057thrombin receptor activity0.0338803630712217
GO:0042221response to chemical stimulus0.0343279384958619
GO:0007167enzyme linked receptor protein signaling pathway0.0343279384958619
GO:0003712transcription cofactor activity0.0347317852046899
GO:0022414reproductive process0.0354068430583468
GO:0048522positive regulation of cellular process0.0354068430583468
GO:0050776regulation of immune response0.0354068430583468
GO:0004713protein-tyrosine kinase activity0.0354068430583468
GO:0019900kinase binding0.0354342921625397
GO:0016563transcription activator activity0.0354342921625397
GO:0007596blood coagulation0.0354342921625397
GO:0002682regulation of immune system process0.0354342921625397
GO:0032403protein complex binding0.0354342921625397
GO:0050817coagulation0.0354342921625397
GO:0007275multicellular organismal development0.0354342921625397
GO:0006026aminoglycan catabolic process0.0354342921625397
GO:0005071transmembrane receptor protein serine/threonine kinase signaling protein activity0.0354342921625397
GO:0002437inflammatory response to antigenic stimulus0.0354342921625397
GO:0015991ATP hydrolysis coupled proton transport0.0354342921625397
GO:0002524hypersensitivity0.0354342921625397
GO:0006027glycosaminoglycan catabolic process0.0354342921625397
GO:0002438acute inflammatory response to antigenic stimulus0.0354342921625397
GO:0015844monoamine transport0.0354342921625397
GO:0016310phosphorylation0.0359834330155454
GO:0030659cytoplasmic vesicle membrane0.0359834330155454
GO:0051240positive regulation of multicellular organismal process0.0359834330155454
GO:0007599hemostasis0.0359834330155454
GO:0044433cytoplasmic vesicle part0.0371035625221812
GO:0009308amine metabolic process0.0381162387370599
GO:0002252immune effector process0.0382047842911111
GO:0008610lipid biosynthetic process0.0382047842911111
GO:0050848regulation of calcium-mediated signaling0.0382047842911111
GO:0016748succinyltransferase activity0.0382047842911111
GO:0031116positive regulation of microtubule polymerization0.0382047842911111
GO:0002448mast cell mediated immunity0.0382047842911111
GO:0050998nitric-oxide synthase binding0.0382047842911111
GO:0043303mast cell degranulation0.0382047842911111
GO:0012506vesicle membrane0.0390008978266377
GO:0012505endomembrane system0.0397854453469242
GO:0016023cytoplasmic membrane-bound vesicle0.0397854453469242
GO:0030170pyridoxal phosphate binding0.0397854453469242
GO:0035295tube development0.0397854453469242
GO:0022804active transmembrane transporter activity0.0397854453469242
GO:0031988membrane-bound vesicle0.0397854453469242
GO:0043299leukocyte degranulation0.0397854453469242
GO:0008508bile acid:sodium symporter activity0.0397854453469242
GO:0007567parturition0.0397854453469242
GO:0005890sodium:potassium-exchanging ATPase complex0.0397854453469242
GO:0045576mast cell activation0.0397854453469242
GO:0030321transepithelial chloride transport0.0397854453469242
GO:0030318melanocyte differentiation0.0397854453469242
GO:0031112positive regulation of microtubule polymerization or depolymerization0.0397854453469242
GO:0050931pigment cell differentiation0.0397854453469242
GO:0005513detection of calcium ion0.0397854453469242
GO:0031113regulation of microtubule polymerization0.0397854453469242
GO:0044249cellular biosynthetic process0.0404087223046943
GO:0006807nitrogen compound metabolic process0.0409674568023372
GO:0030001metal ion transport0.0415910646563362
GO:0042802identical protein binding0.0421285244510891
GO:0006810transport0.0421285244510891
GO:0050878regulation of body fluid levels0.0421285244510891
GO:0007242intracellular signaling cascade0.0421727043001538
GO:0002824positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains0.0422459383313623
GO:0051018protein kinase A binding0.0422459383313623
GO:0042730fibrinolysis0.0422459383313623
GO:0002821positive regulation of adaptive immune response0.0422459383313623
GO:0002444myeloid leukocyte mediated immunity0.0422459383313623
GO:0048015phosphoinositide-mediated signaling0.0430945792495447
GO:0001525angiogenesis0.0430945792495447
GO:0007243protein kinase cascade0.0439723224692827
GO:0042060wound healing0.0439723224692827
GO:0048856anatomical structure development0.0442478902729819
GO:0003008system process0.0442478902729819
GO:0005684U2-dependent spliceosome0.0442478902729819
GO:0002705positive regulation of leukocyte mediated immunity0.0442478902729819
GO:0015125bile acid transmembrane transporter activity0.0442478902729819
GO:0046785microtubule polymerization0.0442478902729819
GO:0015988energy coupled proton transport, against electrochemical gradient0.0442478902729819
GO:0042423catecholamine biosynthetic process0.0442478902729819
GO:0002708positive regulation of lymphocyte mediated immunity0.0442478902729819
GO:0016051carbohydrate biosynthetic process0.0464342122190085
GO:0044446intracellular organelle part0.0470218110545163
GO:0044422organelle part0.0471998514227728
GO:0045860positive regulation of protein kinase activity0.0471998514227728
GO:0031349positive regulation of defense response0.0471998514227728
GO:0002699positive regulation of immune effector process0.0471998514227728
GO:0050729positive regulation of inflammatory response0.0471998514227728
GO:0051234establishment of localization0.0474879696980125
GO:0048513organ development0.0479506261104194
GO:0033674positive regulation of kinase activity0.0482779721737636
GO:0008283cell proliferation0.0482779721737636
GO:0048514blood vessel morphogenesis0.0485772734950791
GO:0030145manganese ion binding0.0485772734950791
GO:0051347positive regulation of transferase activity0.0485772734950791
GO:0048731system development0.0485772734950791
GO:0004672protein kinase activity0.0485772734950791
GO:0001937negative regulation of endothelial cell proliferation0.0485772734950791
GO:0030641cellular hydrogen ion homeostasis0.0485772734950791
GO:0002706regulation of lymphocyte mediated immunity0.0485772734950791
GO:0030195negative regulation of blood coagulation0.0485772734950791
GO:0002703regulation of leukocyte mediated immunity0.0485772734950791



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
bone marrow1.72e-1376
bone element1.45e-1282
skeletal element1.62e-1190
immune system3.61e-1193
hematopoietic system1.23e-1098
blood island1.23e-1098
skeletal system1.95e-10100
hemolymphoid system1.03e-09108


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.0271681
MA0006.10.0191097
MA0007.10.0556323
MA0009.10.511976
MA0014.12.14246e-11
MA0017.10.367419
MA0019.10.161412
MA0024.10.00116647
MA0025.10.0754511
MA0027.11.00371
MA0028.10.00313744
MA0029.12.67475
MA0030.10.638856
MA0031.11.97418
MA0038.10.0911007
MA0040.10.317688
MA0041.10.314559
MA0042.10.281517
MA0043.10.02607
MA0046.10.298616
MA0048.10.0169261
MA0050.10.485008
MA0051.10.549515
MA0052.10.0974872
MA0055.10.00733801
MA0056.10
MA0057.10.0209453
MA0058.10.0441882
MA0059.10.0983042
MA0060.14.24315e-05
MA0061.10.0314695
MA0063.10
MA0066.10.318097
MA0067.10.204137
MA0068.10.0446668
MA0069.10.971397
MA0070.10.271413
MA0071.10.822167
MA0072.10.645942
MA0073.10
MA0074.10.412485
MA0076.10.00694939
MA0077.10.412976
MA0078.10.17413
MA0081.10.901814
MA0083.10.0841151
MA0084.10.404006
MA0087.10.426011
MA0088.10.000165456
MA0089.10
MA0090.10.3175
MA0091.10.711927
MA0092.10.589301
MA0093.10.0511776
MA0095.10
MA0098.10
MA0100.10.0156802
MA0101.10.000420953
MA0103.10.148106
MA0105.10.00106091
MA0106.10.00358987
MA0107.10.00216575
MA0108.21.04241
MA0109.10
MA0111.10.382882
MA0113.10.539933
MA0114.10.467508
MA0115.10.599778
MA0116.10.0651833
MA0117.10.10556
MA0119.10.255167
MA0122.10.261712
MA0124.10.813955
MA0125.10.346702
MA0130.10
MA0131.10.00395122
MA0132.10
MA0133.10
MA0135.10.598113
MA0136.11.39888
MA0139.10.000314219
MA0140.11.88666
MA0141.10.882642
MA0142.10.334984
MA0143.10.708222
MA0144.10.00786926
MA0145.10.000309161
MA0146.15.75273e-10
MA0147.10.00305404
MA0148.10.716228
MA0149.11.09404e-05
MA0062.20.000986071
MA0035.210.9933
MA0039.20
MA0138.20.00290285
MA0002.21.12607
MA0137.20.0373828
MA0104.20.000396042
MA0047.20.303057
MA0112.20.00176848
MA0065.20.130905
MA0150.10.112732
MA0151.10
MA0152.10.213251
MA0153.10.0122477
MA0154.10.0121721
MA0155.18.47496e-05
MA0156.11.76972
MA0157.10.55659
MA0158.10
MA0159.10.691596
MA0160.11.40712
MA0161.10
MA0162.19.78117e-13
MA0163.14.65288e-13
MA0164.10.0763263
MA0080.23.63622
MA0018.20.0257132
MA0099.20.302555
MA0079.20
MA0102.20.450797
MA0258.10.140624
MA0259.10.000276006
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
GATA1#2623401.909902555464856.67319657923523e-050.00107536179222149
GATA2#2624492.198949489239951.67209705250636e-079.22515288255214e-06
SIRT6#51548105.409802957395242.12284300479941e-050.000468033777872589
SMARCA4#659763.311955703687780.01035018105709490.038436957629767
TAL1#6886232.418937266130720.0001045033926144370.00145697901765575



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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